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There are 2 options to view the Jupyter notebooks contained in this repository:

  • online with Binder: just click Binder
  • on your Linux/macOS computer (or virtual machine):
    • clone this repository
    • cd in the repository directory
    • run ./start_tutorial.sh to install BioBlend in a virtualenv and start the Jupyter Notebook in your browser.

Accompanying slides.

The recommended order in which to view the notebooks (especially if you are following the slides) is:

  1. galaxy_api_histories.ipynb
  2. ex1_galaxy_api.ipynb
  3. bioblend_histories.ipynb
  4. ex1_bioblend.ipynb
  5. bioblend.objects_histories.ipynb
  6. ex1_bioblend.objects.ipynb
  7. (optional) ex1_extras.ipynb

In case of doubt, don't forget to check the Galaxy API docs and the BioBlend docs.

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