{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":802515710,"defaultBranch":"main","name":"barkit","ownerLogin":"nsyzrantsev","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2024-05-18T14:08:51.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/47356892?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1716049694.0","currentOid":""},"activityList":{"items":[{"before":"52e692eb5bec31454b40e26974fa8a9b93aa93e0","after":"436603bdc0253496985cd9f291e59df8a6598899","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-11T19:41:13.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Change pattern1 to optional","shortMessageHtmlLink":"Change pattern1 to optional"}},{"before":"0a89f4b94875f532dad487a65eea6ec58217a175","after":"52e692eb5bec31454b40e26974fa8a9b93aa93e0","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-11T18:45:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"WIP","shortMessageHtmlLink":"WIP"}},{"before":"465f666b388e01a8803ba141da026ebf60865ad7","after":"0a89f4b94875f532dad487a65eea6ec58217a175","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-11T18:29:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"WIP: update processing of se data","shortMessageHtmlLink":"WIP: update processing of se data"}},{"before":"236de44ac8d80d0e3a96d0b0b7979a9b55b11160","after":"465f666b388e01a8803ba141da026ebf60865ad7","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-10T20:52:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Prototype: bufferization reading of FASTQ files","shortMessageHtmlLink":"Prototype: bufferization reading of FASTQ files"}},{"before":"29fe4b56b6676a11786b81a1cea493663763d565","after":"236de44ac8d80d0e3a96d0b0b7979a9b55b11160","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-07T17:16:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Update unit tests for reverse complement","shortMessageHtmlLink":"Update unit tests for reverse complement"}},{"before":"0af89362581d99a636d8f98311878a863ee686ac","after":"29fe4b56b6676a11786b81a1cea493663763d565","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-07T16:02:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"WIP: prototype pe fastq processing","shortMessageHtmlLink":"WIP: prototype pe fastq processing"}},{"before":"f19d6cb2c24ae01d38342a6742e387cafabca0ba","after":"0af89362581d99a636d8f98311878a863ee686ac","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-07T12:53:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Add action=ArgAction::SetFalse for --rc-barcodes","shortMessageHtmlLink":"Add action=ArgAction::SetFalse for --rc-barcodes"}},{"before":"f132ee5ca00db443e841103374a39d77ed08444b","after":"f19d6cb2c24ae01d38342a6742e387cafabca0ba","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-07T12:47:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Fixed bug with head/seq/qual order","shortMessageHtmlLink":"Fixed bug with head/seq/qual order"}},{"before":"d1b7ecfb036e6b71d2482557a6374268e141dbe3","after":"f132ee5ca00db443e841103374a39d77ed08444b","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-07T12:23:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Rename BarcodeExtractor -> BarcodeParser","shortMessageHtmlLink":"Rename BarcodeExtractor -> BarcodeParser"}},{"before":"e05cca09df50e27ff3449fa14923888bca4bd25b","after":"d1b7ecfb036e6b71d2482557a6374268e141dbe3","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-07T12:20:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Add --rc-barcodes flag","shortMessageHtmlLink":"Add --rc-barcodes flag"}},{"before":"857997aae2ea2ecfc8fc441563fa31192701363f","after":"e05cca09df50e27ff3449fa14923888bca4bd25b","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-07T11:27:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Match reverse complement read","shortMessageHtmlLink":"Match reverse complement read"}},{"before":"3bc1f9b4b3fb2857e5b46c77f5b1a2567ae1d882","after":"857997aae2ea2ecfc8fc441563fa31192701363f","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-07T07:11:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Implement parallelization for extract crate","shortMessageHtmlLink":"Implement parallelization for extract crate"}},{"before":"8b1cd739a38b15503a013e4bd76989d32e79b4e7","after":"3bc1f9b4b3fb2857e5b46c77f5b1a2567ae1d882","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-07T06:43:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Rename get_reader and get_writer in fastq.rs","shortMessageHtmlLink":"Rename get_reader and get_writer in fastq.rs"}},{"before":"39296d84740161ad13f727ccb5c473a37c0eb7a9","after":"8b1cd739a38b15503a013e4bd76989d32e79b4e7","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-07T06:41:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"WIP","shortMessageHtmlLink":"WIP"}},{"before":"59c28bcd8c4a2ca2fce9b7d78f356371688d5066","after":"39296d84740161ad13f727ccb5c473a37c0eb7a9","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-07T06:14:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Use TreRegexError in Result<...>","shortMessageHtmlLink":"Use TreRegexError in Result<...>"}},{"before":"24963725ddaff10f231465170efc985b6e5e88a0","after":"59c28bcd8c4a2ca2fce9b7d78f356371688d5066","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-06T11:14:01.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"WIP","shortMessageHtmlLink":"WIP"}},{"before":"a67768b388a8acb829ff3341795a0749106fe975","after":"24963725ddaff10f231465170efc985b6e5e88a0","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-06T10:41:52.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Remove unwrap from extract.rs and pattern.rs","shortMessageHtmlLink":"Remove unwrap from extract.rs and pattern.rs"}},{"before":"1ca20269f3cb1692b8b798590dd11acc6fa52ac3","after":"a67768b388a8acb829ff3341795a0749106fe975","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-06T10:22:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"WIP: reformat errors","shortMessageHtmlLink":"WIP: reformat errors"}},{"before":"e282edee1c3e4d757e60126698353cd9d8ca2b3d","after":"1ca20269f3cb1692b8b798590dd11acc6fa52ac3","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-06T10:02:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Add test for pattern.rs","shortMessageHtmlLink":"Add test for pattern.rs"}},{"before":"cd9907deea7879e086e14c8c0ee7fc06eea6ec8f","after":"e282edee1c3e4d757e60126698353cd9d8ca2b3d","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-06T09:30:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Split barcode.rs to extract.rs and pattern.rs","shortMessageHtmlLink":"Split barcode.rs to extract.rs and pattern.rs"}},{"before":"59cdb3fa24405189cd5f6e23a2a3825b9871ab7c","after":"cd9907deea7879e086e14c8c0ee7fc06eea6ec8f","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-06T09:06:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"3f06409160db17b0679650bb88c5978225410661","after":"59cdb3fa24405189cd5f6e23a2a3825b9871ab7c","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-06T08:40:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Update main README.md","shortMessageHtmlLink":"Update main README.md"}},{"before":"4470b778831f6cfbf216bc8978451c11c369d23e","after":"3f06409160db17b0679650bb88c5978225410661","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-06T08:25:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Clear code","shortMessageHtmlLink":"Clear code"}},{"before":"f616568bd2f1c9cbf88c0a4825f01e87092077dc","after":"4470b778831f6cfbf216bc8978451c11c369d23e","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-06T08:23:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Remove --max-error and raplace it to TRE regex pattern { 1s < 3 }","shortMessageHtmlLink":"Remove --max-error and raplace it to TRE regex pattern { 1s < 3 }"}},{"before":"a40535533ef2cf0d7056bc77656e407ae36d9eff","after":"f616568bd2f1c9cbf88c0a4825f01e87092077dc","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-05T20:34:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"WIP: use OwnedRecord","shortMessageHtmlLink":"WIP: use OwnedRecord"}},{"before":"19408cb3b1b4a630d1b2f9ea5e836065c2de872c","after":"a40535533ef2cf0d7056bc77656e407ae36d9eff","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-05T20:22:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"WIP: rename --max-mismatch -> --max-error","shortMessageHtmlLink":"WIP: rename --max-mismatch -> --max-error"}},{"before":"6f17edd37a421f43fb207014841282b2c1cdefdb","after":"19408cb3b1b4a630d1b2f9ea5e836065c2de872c","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-05T19:51:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Update root Cargo.toml","shortMessageHtmlLink":"Update root Cargo.toml"}},{"before":"1eb285984f6df62436dc9201b98a99f4ca1db1d6","after":"6f17edd37a421f43fb207014841282b2c1cdefdb","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-05T19:50:53.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Dynamically define read buffer size","shortMessageHtmlLink":"Dynamically define read buffer size"}},{"before":"25a75904cd3543be61df8643278afe53737e2975","after":"1eb285984f6df62436dc9201b98a99f4ca1db1d6","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-05T18:28:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Replace tre -> fuzzy_regex","shortMessageHtmlLink":"Replace tre -> fuzzy_regex"}},{"before":"4fa2c00e562f1b28185e42a605eece357fac4cc4","after":"25a75904cd3543be61df8643278afe53737e2975","ref":"refs/heads/1-implement-extract-crate","pushedAt":"2024-07-05T18:26:09.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"nsyzrantsev","name":"Nikita Syzrantsev","path":"/nsyzrantsev","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/47356892?s=80&v=4"},"commit":{"message":"Rename tre_regex -> fuzzy_regex","shortMessageHtmlLink":"Rename tre_regex -> fuzzy_regex"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEfTJz6gA","startCursor":null,"endCursor":null}},"title":"Activity ยท nsyzrantsev/barkit"}