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I have installed numpy using pip but full tests fail. Here is the full log: https://gist.github.com/SashaOv/0403c4ef38af00ecaf0d
How did you install Python? MacPython?
Did numpy compile, or did you get the pypi wheel ?
It was python 3.4.0 installed with PyEnv.
The numpy was compiled with gcc:
> gcc -v
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
Thread model: posix
I don't know pyenv ; does it compile a new version of Python?
What do you get for python -c "import distutils.util; print(distutils.util.get_platform())"
python -c "import distutils.util; print(distutils.util.get_platform())"
I guess that you did pip install numpy and pip downloaded the numpy source and compiled it?
pip install numpy
Please see the linked Gist https://gist.github.com/SashaOv/0403c4ef38af00ecaf0d for the full log.
Pyenv is a shell wrapper and doesn't modify the Python code. It is using the stock version of python, in this case 3.4.0
The gist gives the log of the test run but not the installation.
I don't know what 'stock python' is. Your version string is:
Python version 3.4.0 (default, May 20 2014, 20:42:24) [GCC 4.2.1 Compatible Apple LLVM 5.1 (clang-503.0.40)]
That matches your gcc version information exactly, implying to me that it was compiled on your machine, maybe via homebrew. The MacPython python.org binary has this version information:
Python 3.4.0 (v3.4.0:04f714765c13, Mar 15 2014, 23:02:41)
[GCC 4.2.1 (Apple Inc. build 5666) (dot 3)] on darwin
so I am pretty sure you don't have that.
The failures are from f2py tests, so it's also possible the Fortran compiler is not compatible.
Using the latest build of gfortran:
> gfortran -v
Using built-in specs.
Configured with: /Builds/unix/gcc/gcc-4.2/configure --prefix=/usr/local --mandir=/share/man --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ --build=i686-apple-darwin8 --host=i686-apple-darwin8 --target=i686-apple-darwin8 --enable-languages=fortran
Thread model: posix
gcc version 4.2.3
Let me know if you need more info. I am using the miniconda build with Python 3.3.0.
Is there a conda support list you could try?
Your gfortran targets i686, I guess that may be a problem, if your Python is 64-bit.
Yep this must be the problem: python is 64 bit while gfortran is run in i686 mode. Is it possible to pass -arch x86_64 to gfortran during the build?
It sounds like this is a conda configuration issue - could you please take this up on some conda support forum? Maybe https://groups.google.com/a/continuum.io/forum/#!forum/conda
seems like an issue numpy can't do much about, so closing. Please reopen if there is something we can do.