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OBiBa Agate Documentation

Targeted at individual studies and study consortia, OBiBa software stack (Opal, Mica etc.) provides a software solution for epidemiological data management, analysis and publication. While Opal, the core data warehouse application, provides all the necessary tools to import, transform and describe data, Mica provides everything needed to build personalized web data portals and publish content of research activities of both studies and consortia. Based on the content defined in Mica, Drupal is the preferred platform to build your personalized web portal.

Agate is the OBiBa's central authentication server which intends to be easy to install and to use. Agate centralizes also some user related services such as profile management, and a notification system using emails.

Warning

Agate documentation is in the process of being rewritten. See also the :download:`Agate Documentation Archive <archive/AGATEDOC.pdf>`

.. toctree::
   :maxdepth: 1

   introduction

.. toctree::
   :maxdepth: 1
   :caption: Administrator Guide

   admin/installation
   admin/configuration

.. toctree::
   :maxdepth: 1
   :caption: Web User Guide

   web-user-guide/index
   web-user-guide/users
   web-user-guide/groups
   web-user-guide/applications
   web-user-guide/tickets
   web-user-guide/administration

.. toctree::
   :maxdepth: 1
   :caption: Python User Guide

   python-user-guide/index
   python-user-guide/user
   python-user-guide/group
   python-user-guide/application
   python-user-guide/other

.. toctree::
   :maxdepth: 1
   :caption: OAuth2 API

   oauth2-api/index
   oauth2-api/authorization-code-grant-flow
   oauth2-api/resource-owner-password-credentials-grant-flow
   oauth2-api/openid-connect-flow