CARO

Common Anatomy Reference Ontology

For full details see: http://obofoundry.org/ontology/caro

This GitHub repo is to manage the source files and release for CARO

Ontology

The ontology is stored in src/ontology/

Bridge Files

Bridge files to various AOs are here:

• bridges/

VALIDATION

We have a Jenkins job for each anatomy ontology, see the list below:

• check-caro-fbbt
• check-caro-po
• check-caro-xao
• check-caro-zfa

These are all grouped here: http://build.berkeleybop.org/view/Anatomy/

If an AO has a red ball it means the combination of CARO, the AO and bridge axioms is formally incoherent (has unsatisfiable classes). The list of unsatisfiable classes is visible by clicking on the job and viewing the 'bridge check' artefact. Scroll to the bottom and look for 'UNSAT's.

To determine the reason:

1. open the relevant bridge file in the repository
2. Initiate the reasoner (HermiT recommended for most ontologies)
3. Open the 'Nothing' node in the inferred view
4. Select '?' to see the explanation where it says SubClassOf Nothing

Additional notes: the fbbt check may be less complete, as Elk is used (HermiT is too slow with fbbt)