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Release file 12 09 19

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matentzn committed Aug 12, 2019
1 parent d08a588 commit 1b9e4e02a6e96fef348ec9d3f2212e63b91604db
Showing with 15,720 additions and 12,897 deletions.
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1,162 cl-base.json

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@@ -1,5 +1,5 @@
format-version: 1.2
data-version: cl/releases/2019-07-16/cl-base.owl
data-version: cl/releases/2019-08-12/cl-base.owl
subsetdef: ubprop:upper_level "abstract upper-level terms not directly useful for analysis"
synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens"
synonymtypedef: LATIN "latin term"
@@ -235,7 +235,7 @@ is_a: CL:0000408 {is_inferred="true"} ! male gamete
intersection_of: CL:0000408 ! male gamete
intersection_of: RO:0002215 GO:0030317
intersection_of: RO:0002215 GO:0048240
relationship: RO:0002104 GO:0005929
relationship: BFO:0000051 GO:0005929
relationship: RO:0002202 CL:0000018 ! spermatid

[Term]
@@ -824,7 +824,7 @@ def: "A cell that has a filiform extrusion of the cell surface." [GOC:tfm]
xref: VHOG:0001532
xref: XAO:0000031
intersection_of: CL:0000003 ! native cell
intersection_of: RO:0002104 GO:0005929
intersection_of: BFO:0000051 GO:0005929

[Term]
id: CL:0000065
@@ -835,7 +835,7 @@ synonym: "ependymocyte" EXACT []
xref: BTO:0001724
xref: FMA:70550
is_a: CL:0000710 ! neurecto-epithelial cell
relationship: RO:0002104 GO:0005929
relationship: BFO:0000051 GO:0005929

[Term]
id: CL:0000066
@@ -858,10 +858,10 @@ disjoint_from: CL:0000738 ! leukocyte
id: CL:0000067
name: ciliated epithelial cell
namespace: cell
def: "An epithelial cell that has a cillia." [GOC:tfm]
def: "An epithelial cell that has a cilia." [GOC:tfm]
xref: FMA:70605
intersection_of: CL:0000075 ! columnar/cuboidal epithelial cell
intersection_of: RO:0002104 GO:0005929
intersection_of: CL:0000066 ! epithelial cell
intersection_of: BFO:0000051 GO:0005929

[Term]
id: CL:0000068
@@ -1330,7 +1330,8 @@ def: "A neuron that uses acetylcholine as a vesicular neurotransmitter." [GOC:tf
xref: BTO:0004902
xref: FMA:84796
xref: WBbt:0006840
is_a: CL:0000540 ! neuron
intersection_of: CL:0000540 ! neuron
intersection_of: RO:0002215 GO:0014055

[Term]
id: CL:0000109
@@ -1859,11 +1860,12 @@ intersection_of: RO:0002215 GO:0043129

[Term]
id: CL:0000158
name: Clara cell
name: club cell
namespace: cell
def: "Epithelial progenitor cell of the lung. Clara cells are dome-shaped with short microvilli but no cilia. They function to protect the bronchiolar epithelium. Clara cells also multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium." [GOC:tfm, PMID:12107102, PMID:7905712]
def: "Epithelial progenitor cell of the lung. Club cells are dome-shaped with short microvilli but no cilia. They function to protect the bronchiolar epithelium. Club cells also multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium." [DOI:10.1183/09031936.00146609, DOI:https\://doi.org/10.1378/chest.12-2762, GOC:tfm, PMID:28128362, PMID:7905712]
synonym: "bronchiolar non-ciliated cell" EXACT []
synonym: "Clara cell of bronchiole" EXACT []
synonym: "Clara cell" EXACT []
synonym: "club cell of bronchiole" EXACT []
xref: BTO:0004811
xref: FMA:14119
is_a: CL:0002328 {is_inferred="true"} ! bronchial epithelial cell
@@ -2017,8 +2019,8 @@ synonym: "alpha cell of iselt of Langerhans" EXACT []
synonym: "pancreatic alpha cell" EXACT []
xref: BTO:0000990
xref: FMA:70585
is_a: CL:0002067 ! type A enterocrine cell
intersection_of: CL:0002067 ! type A enterocrine cell
is_a: CL:0002067 ! type A enteroendocrine cell
intersection_of: CL:0002067 ! type A enteroendocrine cell
intersection_of: BFO:0000050 UBERON:0001264
relationship: BFO:0000050 UBERON:0000006
relationship: RO:0002202 CL:0002351 ! progenitor cell of endocrine pancreas
@@ -2706,6 +2708,7 @@ id: CL:0000239
name: brush border epithelial cell
namespace: cell
is_a: CL:0000075 ! columnar/cuboidal epithelial cell
relationship: BFO:0000051 GO:0005929

[Term]
id: CL:0000240
@@ -8949,8 +8952,8 @@ namespace: cell
def: "An olfactory receptor cell in which the apical ending of the dendrite is a pronounced ciliated olfactory knob." [PMID:16841163]
synonym: "ciliated olfactory sensory neuron" EXACT []
synonym: "ciliated sensory neuron" EXACT []
is_a: CL:0000207 ! olfactory receptor cell
relationship: RO:0002104 GO:0005929
intersection_of: CL:0000207 ! olfactory receptor cell
intersection_of: BFO:0000051 GO:0005929

[Term]
id: CL:0000848

[Term]
id: CL:0002067
name: type A enterocrine cell
name: type A enteroendocrine cell
namespace: cell
def: "An enterocrine cell that produces glucagon." [GOC:tfm, ISBN:0412046911]
def: "An enteroendocrine cell that produces glucagon." [GOC:tfm, ISBN:0412046911]
xref: FMA:62939
intersection_of: CL:0000164 ! enteroendocrine cell
intersection_of: RO:0002215 GO:0070091
namespace: cell
def: "A type of enteroendocrine cell found in the stomach that secretes glucagon." [GOC:tfm]
xref: FMA:83411
is_a: CL:0002067 ! type A enterocrine cell
intersection_of: CL:0002067 ! type A enterocrine cell
is_a: CL:0002067 ! type A enteroendocrine cell
intersection_of: CL:0002067 ! type A enteroendocrine cell
intersection_of: BFO:0000050 UBERON:0000945
created_by: tmeehan
creation_date: 2010-09-10T10:54:42Z
id: CL:0002638
name: bronchioalveolar stem cell
namespace: cell
def: "A respiratory stem cell found at the junction of the terminal (conductive) bronchiole and the respiratory bronchiole. This cell types gives rise to alveolar cell types and Clara cells in response to lung injury. This cell type expresses markers Scgb1a1 and Sftpc." [GOC:tfm, PMID:15960971]
def: "A respiratory stem cell found at the junction of the terminal (conductive) bronchiole and the respiratory bronchiole. This cell types gives rise to alveolar cell types and club cells in response to lung injury. This cell type expresses markers Scgb1a1 and Sftpc." [GOC:tfm, PMID:15960971]
synonym: "basal epithelial cell of bronchioalveolar duct junction" EXACT []
synonym: "BASC" EXACT []
is_a: CL:0002633 {is_inferred="true"} ! respiratory basal cell
namespace: cell
def: "A ciliated epithelial cell with many cilium." [CL:CVS]
is_a: CL:0000066 ! epithelial cell
relationship: RO:0002104 GO:0005929
relationship: BFO:0000051 GO:0005929

[Term]
id: CL:0005013
name: single ciliated epithelial cell
namespace: cell
def: "A ciliated epithelial cell with a single cilium." [CL:CVS]
is_a: CL:0000066 ! epithelial cell
relationship: RO:0002104 GO:0005929
relationship: BFO:0000051 GO:0005929

[Term]
id: CL:0005014
comment: Taxon specificity not clear -present in embryonic anurans.
is_a: CL:0002321 ! embryonic cell
relationship: BFO:0000050 UBERON:0001003
relationship: RO:0002104 GO:0005929
relationship: BFO:0000051 GO:0005929
created_by: haendel

[Term]
[Term]
id: CL:0010011
name: cerebral cortex GABAergic interneuron
def: "a GABAergic interneuron that is part_of a cerebral cortex" []
def: "A GABAergic interneuron whose soma is located in the cerebral cortex." [GOC:dos]
intersection_of: CL:0011005 ! GABAergic interneuron
intersection_of: RO:0002100 UBERON:0000956

[Term]
id: CL:0011005
name: GABAergic interneuron
def: "An interneuron that uses GABA as a vesicular neurotransmitter." [GOC:nv]
is_a: CL:0000099 ! interneuron
is_a: CL:0000617 ! GABAergic neuron
def: "An interneuron that uses GABA as a vesicular neurotransmitter. These interneurons are inhibitory" [GOC:CellBLAST, GOC:nv, PMID:29724907]
comment: The formal and textual definitions of this term will need to be altered if evidence for non-inhibitory GABA-ergic neurons emerges.
synonym: "GABAergic inhibitory interneuron" EXACT []
is_a: CL:0000498 ! inhibitory interneuron
intersection_of: CL:0000099 ! interneuron
intersection_of: CL:0000617 ! GABAergic neuron
intersection_of: RO:0002215 GO:0061534

[Term]
id: CL:0011006
name: Lugaro cell
def: "An inhibitory GABAergic interneuron found in the cerebellar cortex." [GOC:nv]
is_a: CL:0011005 ! GABAergic interneuron
relationship: BFO:0000050 UBERON:0002129
relationship: RO:0002100 UBERON:0002129

[Term]
id: CL:0011007
[Term]
id: CL:0015000
name: cranial motor neuron
def: "Motor neuron that innervate muscles that control eye, jaw, and facial movements of the vertebrate head and parasympathetic neurons that innervate certain glands and organs. " [ZFIN:CVS]
def: "Motor neuron that innervate muscles that control eye, jaw, and facial movements of the vertebrate head and parasympathetic neurons that innervate certain glands and organs." [ZFIN:CVS]
synonym: "cranial motoneuron" EXACT []
xref: PMID:14699587
xref: PMID:14699587
is_a: CL:0000100 ! motor neuron

[Term]
id: CL:1001566
name: bronchioalveolar stem cells
namespace: cl
def: "a respiratory stem cell found at the junction of the terminal (conductive) bronchiole and the respiratory bronchiole, which gives rise to alveolar cell types and Clara cells in response to lung injury." [MP:0011691]
def: "a respiratory stem cell found at the junction of the terminal (conductive) bronchiole and the respiratory bronchiole, which gives rise to alveolar cell types and club cells in response to lung injury." [MP:0011691]
is_a: CL:0000034 ! stem cell
relationship: BFO:0000050 UBERON:0000115

created_by: TermGenie
creation_date: 2015-12-03T16:42:40Z

[Term]
id: CL:3000000
name: ciliated epithelial cell of esophagus
namespace: cell
def: "A ciliated epithelial cell of the esophagus." [GOC:CellBLAST, PMID:29802404]
intersection_of: CL:0000067 ! ciliated epithelial cell
intersection_of: BFO:0000050 UBERON:0001976
created_by: CellBLAST
creation_date: 2019-02-09T16:40:30Z

[Term]
id: CL:3000001
name: Hofbauer cell
namespace: cell
def: "Oval eosinophilic histiocytes with granules and vacuoles found in placenta, which are of mesenchymal origin, in mesoderm of the chorionic villus, particularly numerous in early pregnancy." [GOC:CellBLAST, PMID:30429548]
is_a: CL:0000235 ! macrophage
created_by: CellBLAST
creation_date: 2019-02-18T19:41:20Z

[Term]
id: CL:3000002
name: sympathetic noradrenergic neuron
namespace: cell
def: "Sympathetic noradrenergic neuron." [GOC:CellBLAST, PMID:30096314]
intersection_of: CL:0011103 ! sympathetic neuron
intersection_of: RO:0002215 GO:0061533
created_by: CellBLAST
creation_date: 2019-02-25T19:30:14Z

[Term]
id: CL:3000003
name: sympathetic cholinergic neuron
namespace: cell
def: "Sympathetic cholinergic neuron." [GOC:CellBLAST, PMID:30096314]
intersection_of: CL:0011103 ! sympathetic neuron
intersection_of: RO:0002215 GO:0014055
created_by: CellBLAST
creation_date: 2019-02-25T19:32:20Z

[Term]
id: CL:3000004
name: peripheral sensory neuron
namespace: cell
def: "Peripheral sensory neuron." [GOC:CellBLAST, PMID:30096314]
is_a: CL:0000101 ! sensory neuron
is_a: CL:0000111 ! peripheral neuron
intersection_of: CL:0000111 ! peripheral neuron
intersection_of: RO:0002215 GO:0050906
created_by: CellBLAST
creation_date: 2019-02-25T19:34:33Z

[Term]
id: CP:0000000
name: neutrophillic cytoplasm

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