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Added group 3 innate lymphoid cell and additional minor fixes to thes…

…e cell types.
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1 parent eaf93f0 commit 2ac62bc345efcb1ef3fac582f148ba0739b621c7 Alexander Diehl committed Jan 31, 2017
Showing with 27 additions and 7 deletions.
  1. +27 −7 src/ontology/cl-edit.owl
@@ -1065,6 +1065,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/CL_0001067>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_0001068>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_0001069>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_0001070>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0001071>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_0001658>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_0002000>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_0002001>))
@@ -2349,6 +2350,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/D96882F1-8709-49AB-BCA9-772A67
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0014055>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0014704>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0030017>))
+Declaration(Class(<http://purl.obolibrary.org/obo/GO_0032634>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0060047>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0060096>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0061527>))
@@ -13164,7 +13166,7 @@ AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.oboli
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/CL_0001065> "2017-01-30T20:20:48Z"^^xsd:dateTime)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/CL_0001065> "cell")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CL_0001065> "innate lymphoid cell")
-EquivalentClasses(<http://purl.obolibrary.org/obo/CL_0001065> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CL_0000542> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0001816>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0045087>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/GO_0019815>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/GO_0042101>)))
+EquivalentClasses(<http://purl.obolibrary.org/obo/CL_0001065> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CL_0000542> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0001816>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0045087>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001002>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001020>)))
SubClassOf(<http://purl.obolibrary.org/obo/CL_0001065> <http://purl.obolibrary.org/obo/CL_0000542>)
# Class: <http://purl.obolibrary.org/obo/CL_0001066> (erythroid progenitor cell, mammalian)
@@ -13208,9 +13210,10 @@ AnnotationAssertion(Annotation(rdfs:comment "GOC:add") Annotation(rdfs:comment "
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/CL_0001069> <http://orcid.org/0000-0001-9990-8331>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/CL_0001069> "2017-01-30T21:20:08Z"^^xsd:dateTime)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/CL_0001069> "ILC2")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/CL_0001069> "nuocyte")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/CL_0001069> "cell")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CL_0001069> "group 2 innate lymphoid cell")
-EquivalentClasses(<http://purl.obolibrary.org/obo/CL_0001069> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CL_0001065> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0032633>)))
+EquivalentClasses(<http://purl.obolibrary.org/obo/CL_0001069> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CL_0001065> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0032634>)))
SubClassOf(<http://purl.obolibrary.org/obo/CL_0001069> <http://purl.obolibrary.org/obo/CL_0001065>)
# Class: <http://purl.obolibrary.org/obo/CL_0001070> (beige adipocyte)
@@ -13227,6 +13230,17 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CL_0001070> "beig
SubClassOf(<http://purl.obolibrary.org/obo/CL_0001070> <http://purl.obolibrary.org/obo/CL_0000136>)
SubClassOf(<http://purl.obolibrary.org/obo/CL_0001070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0001347>))
+# Class: <http://purl.obolibrary.org/obo/CL_0001071> (group 3 innate lymphoid cell)
+
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/CL_0001071> <http://orcid.org/0000-0001-9990-8331>)
+AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/CL_0001071> "2017-01-31T20:21:26Z"^^xsd:dateTime)
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/CL_0001071> "ILC3")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "GOC:add") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "GOC:dsd") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:23292121") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:23348417") <http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/CL_0001071> "An innate lymphoid cell that constituitively expresses RORgt and is capable of expressing IL17A and/or IL-22.")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/CL_0001071> "cell")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CL_0001071> "group 3 innate lymphoid cell")
+EquivalentClasses(<http://purl.obolibrary.org/obo/CL_0001071> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CL_0001065> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/PR_000003455>)))
+SubClassOf(<http://purl.obolibrary.org/obo/CL_0001071> <http://purl.obolibrary.org/obo/CL_0001065>)
+
# Class: <http://purl.obolibrary.org/obo/CL_0001658> (visual pigment cell (sensu Nematoda and Protostomia))
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/CL_0001658> "FBbt:00004230"^^xsd:string)
@@ -14347,15 +14361,16 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CL_0002088> "inte
EquivalentClasses(<http://purl.obolibrary.org/obo/CL_0002088> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CL_0000710> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0043134>)))
SubClassOf(Annotation(<http://www.geneontology.org/formats/oboInOwl#is_inferred> "true"^^xsd:string) <http://purl.obolibrary.org/obo/CL_0002088> <http://purl.obolibrary.org/obo/CL_0000710>)
-# Class: <http://purl.obolibrary.org/obo/CL_0002089> (nuocyte)
+# Class: <http://purl.obolibrary.org/obo/CL_0002089> (group 2 innate lymphoid cell, mouse)
-AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "GOC:tfm"^^xsd:string) Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:20200518"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/CL_0002089> "A leukocyte cell capable of secreting IL-13 in response to a helminth infection. This cell is lineage-negative, ICOS-positive, IL1RL1-positive, IL7Ralpha-positive, and IL17Br-positive."^^xsd:string)
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "GOC:tfm"^^xsd:string) Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:20200518"^^xsd:string) Annotation(rdfs:comment "GOC:add") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/CL_0002089> "A group 2 innate lymphoid cell in the mouse capable of secreting IL-13 in response to a helminth infection. This cell is lineage-negative, ICOS-positive, IL1RL1-positive, IL7Ralpha-positive, and IL17Br-positive."^^xsd:string)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/CL_0002089> "tmeehan"^^xsd:string)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#creation_date> <http://purl.obolibrary.org/obo/CL_0002089> "2010-08-12T02:22:19Z"^^xsd:string)
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym> <http://purl.obolibrary.org/obo/CL_0002089> "nuocyte")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/CL_0002089> "cell"^^xsd:string)
-AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CL_0002089> "nuocyte"^^xsd:string)
-EquivalentClasses(<http://purl.obolibrary.org/obo/CL_0002089> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CL_0000738> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002104> <http://purl.obolibrary.org/obo/PR_000001860>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002104> <http://purl.obolibrary.org/obo/PR_000001869>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002104> <http://purl.obolibrary.org/obo/PR_000008982>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002104> <http://purl.obolibrary.org/obo/PR_000008994>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0002830>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0032616>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001002>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001004>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001008>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001012>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001020>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001024>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001084>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001326>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001893>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001927>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000007431>)))
-SubClassOf(Annotation(<http://www.geneontology.org/formats/oboInOwl#is_inferred> "true"^^xsd:string) <http://purl.obolibrary.org/obo/CL_0002089> <http://purl.obolibrary.org/obo/CL_0000738>)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CL_0002089> "group 2 innate lymphoid cell, mouse"^^xsd:string)
+EquivalentClasses(<http://purl.obolibrary.org/obo/CL_0002089> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CL_0001069> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002104> <http://purl.obolibrary.org/obo/PR_000001860>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002104> <http://purl.obolibrary.org/obo/PR_000001869>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002104> <http://purl.obolibrary.org/obo/PR_000008982>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002104> <http://purl.obolibrary.org/obo/PR_000008994>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0002830>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0032616>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001002>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001004>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001008>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001012>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001020>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001024>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001084>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001326>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001893>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000001927>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_plasma_membrane_part> <http://purl.obolibrary.org/obo/PR_000007431>)))
+SubClassOf(Annotation(<http://www.geneontology.org/formats/oboInOwl#is_inferred> "true"^^xsd:string) <http://purl.obolibrary.org/obo/CL_0002089> <http://purl.obolibrary.org/obo/CL_0001069>)
# Class: <http://purl.obolibrary.org/obo/CL_0002090> (polar body)
@@ -26463,6 +26478,11 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/D96882F1-8709-49A
EquivalentClasses(<http://purl.obolibrary.org/obo/D96882F1-8709-49AB-BCA9-772A67EA6C33> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0005634> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000053> <http://purl.obolibrary.org/obo/PATO_0002506>)))
SubClassOf(<http://purl.obolibrary.org/obo/D96882F1-8709-49AB-BCA9-772A67EA6C33> <http://purl.obolibrary.org/obo/GO_0005634>)
+# Class: <http://purl.obolibrary.org/obo/GO_0032634> (interleukin-5 production)
+
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/GO_0032634> "interleukin-5 production")
+SubClassOf(<http://purl.obolibrary.org/obo/GO_0032634> <http://purl.obolibrary.org/obo/GO_0001816>)
+
# Class: <http://purl.obolibrary.org/obo/GO_0042101> (T cell receptor complex)
SubClassOf(Annotation(rdfs:comment "To be added to GO") <http://purl.obolibrary.org/obo/GO_0042101> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/PR_000001020>))

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