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Merge pull request #553 from obophenotype/refresh-imports

Import refreshed, removed rogue default class from definitions.owl
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dosumis committed Mar 11, 2019
2 parents ab8968b + 3737e8d commit 7e7a165e7b64783f46e9db56c53457872fd225b2
Showing with 395,066 additions and 193,671 deletions.
  1. +371 −371 cl-base.json
  2. +1 −1 cl-base.obo
  3. +25 −47 cl-base.owl
  4. +5,643 −132,578 cl.json
  5. +42 −33 imports/chebi_import.json
  6. +18 −15 imports/chebi_import.obo
  7. +6,579 −102 imports/chebi_import.owl
  8. +587 −560 imports/go_import.json
  9. +18 −19 imports/go_import.obo
  10. +81,725 −101 imports/go_import.owl
  11. +1 −1 imports/pato_import.json
  12. +1 −1 imports/pato_import.obo
  13. +1,666 −8 imports/pato_import.owl
  14. +11 −11 imports/ro_import.json
  15. +1 −1 imports/ro_import.obo
  16. +5,791 −682 imports/ro_import.owl
  17. +1,367 −1,367 imports/uberon_import.json
  18. +1 −1 imports/uberon_import.obo
  19. +282,773 −42,262 imports/uberon_import.owl
  20. +1 −25 patterns/definitions.owl
  21. +8 −8 patterns/pattern.owl
  22. +3,068 −6,608 reports/cl-obo-report.tsv
  23. +42 −33 src/ontology/imports/chebi_import.json
  24. +18 −15 src/ontology/imports/chebi_import.obo
  25. +18 −15 src/ontology/imports/chebi_import.owl
  26. +587 −560 src/ontology/imports/go_import.json
  27. +18 −19 src/ontology/imports/go_import.obo
  28. +88 −125 src/ontology/imports/go_import.owl
  29. +1 −1 src/ontology/imports/pato_import.json
  30. +1 −1 src/ontology/imports/pato_import.obo
  31. +1 −1 src/ontology/imports/pato_import.owl
  32. +11 −11 src/ontology/imports/ro_import.json
  33. +1 −1 src/ontology/imports/ro_import.obo
  34. +124 −12 src/ontology/imports/ro_import.owl
  35. +1,367 −1,367 src/ontology/imports/uberon_import.json
  36. +1 −1 src/ontology/imports/uberon_import.obo
  37. +1 −1 src/ontology/imports/uberon_import.owl
  38. +3,068 −6,608 src/ontology/reports/cl-obo-report.tsv
  39. +0 −24 src/patterns/data/clustering/abnormalAnatomicalEntity.ofn
  40. +0 −1 src/patterns/data/clustering/abnormalAnatomicalEntity.tsv
  41. +0 −2 src/patterns/data/clustering/abnormalAnatomicalEntity.txt
  42. +0 −24 src/patterns/data/default/abnormalAnatomicalEntity.ofn
  43. +0 −1 src/patterns/data/default/abnormalAnatomicalEntity.tsv
  44. +0 −2 src/patterns/data/default/abnormalAnatomicalEntity.txt
  45. +1 −25 src/patterns/definitions.owl
  46. +4 −3 src/patterns/dosdp-patterns/abnormalAnatomicalEntity.yaml
  47. +8 −8 src/patterns/pattern.owl
  48. +8 −8 src/patterns/pattern_owl_seed.txt

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@@ -1,5 +1,5 @@
format-version: 1.2
data-version: cl/releases/2019-02-21/cl-base.owl
data-version: cl/releases/2019-03-11/cl-base.owl
subsetdef: ubprop:upper_level "abstract upper-level terms not directly useful for analysis"
synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens"
synonymtypedef: LATIN "latin term"

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