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RELEASE 30-04-2019

Mostly cleanup of previous release & making sure ODK tests pass.
Also include -basic files, which were missing from the last release.
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dosumis committed Apr 30, 2019
1 parent ca41d55 commit fa0c490d5fb980b5d4b506779c4d60f265207dd7
Showing with 193,095 additions and 38,299 deletions.
  1. +50 −33 catalog-v001.xml
  2. +548 −556 cl-base.json
  3. +40 −40 cl-base.obo
  4. +77 −80 cl-base.owl
  5. +515 −118 cl-basic.obo
  6. +648 −29,018 cl-basic.owl
  7. +80,992 −3,061 cl.json
  8. +22,962 −3,154 cl.obo
  9. +85,341 −317 cl.owl
  10. +1 −1 src/ontology/Makefile
  11. +5 −5 src/ontology/cl.Makefile
  12. +13 −13 src/ontology/cl.owl
  13. +1,902 −1,902 src/ontology/ontologyterms.txt
  14. +1 −1 src/patterns/definitions.owl
@@ -1,38 +1,55 @@
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
<group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
<uri id="Automatically generated entry, Timestamp=1469044058614" name="http://purl.obolibrary.org/obo/cl-bridge-to-uberon.owl" uri="src/ontology/bridge/cl-bridge-to-uberon.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="http://purl.obolibrary.org/obo/cl.owl" uri="cl.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="http://purl.obolibrary.org/obo/cl/cl-basic.owl" uri="cl-basic.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="http://purl.obolibrary.org/obo/cl/cl-plus-nif.owl" uri="src/ontology/cl-plus-nif.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="http://purl.obolibrary.org/obo/cl/imports/chebi_import.owl" uri="src/ontology/imports/chebi_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="http://purl.obolibrary.org/obo/cl/imports/clo_import.owl" uri="src/ontology/imports/clo_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="http://purl.obolibrary.org/obo/cl/imports/go_import.owl" uri="src/ontology/imports/go_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="duplicate:http://purl.obolibrary.org/obo/cl/imports/imports/go_import.owl" uri="src/ontology/imports/go_seed.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="duplicate:http://purl.obolibrary.org/obo/cl/imports/imports/go_import.owl" uri="src/ontology/imports/uberon_seed.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="http://purl.obolibrary.org/obo/cl/imports/ncbitaxon_import.owl" uri="src/ontology/imports/ncbitaxon_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="http://purl.obolibrary.org/obo/cl/imports/pato_import.owl" uri="src/ontology/imports/pato_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="http://purl.obolibrary.org/obo/cl/imports/pr_import.owl" uri="src/ontology/imports/pr_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="http://purl.obolibrary.org/obo/cl/imports/ro_import.owl" uri="src/ontology/imports/ro_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="http://purl.obolibrary.org/obo/cl/imports/uberon_import.owl" uri="src/ontology/imports/uberon_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="http://purl.obolibrary.org/obo/cl/multispecies.owl" uri="src/ontology/multispecies.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="duplicate:http://www.gong.manchester.ac.uk/cto_norm.owl" uri="for_reference/Manchester_CL_normalisation_expt/owl/cto_norm.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="duplicate:http://www.gong.manchester.ac.uk/cto_norm.owl" uri="for_reference/Manchester_CL_normalisation_expt/owl/cto_norm_changes.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="http://www.gong.manchester.ac.uk/fma.owl" uri="for_reference/Manchester_CL_normalisation_expt/owl/fma.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="http://www.gong.manchester.ac.uk/go.owl" uri="for_reference/Manchester_CL_normalisation_expt/owl/go.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="http://www.gong.manchester.ac.uk/pato.owl" uri="for_reference/Manchester_CL_normalisation_expt/owl/pato.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="http://www.gong.manchester.ac.uk/ro.owl" uri="for_reference/Manchester_CL_normalisation_expt/owl/ro.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="shadowed:http://purl.obolibrary.org/obo/cl.owl" uri="src/ontology/cl-edit_neg_exp.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="shadowed:http://purl.obolibrary.org/obo/cl/cl-basic.owl" uri="src/ontology/cl-basic.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/chebi_import.owl" uri="imports/chebi_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/clo_import.owl" uri="imports/clo_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/go_import.owl" uri="imports/go_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/imports/go_import.owl" uri="imports/go_seed.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/imports/go_import.owl" uri="imports/uberon_seed.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/ncbitaxon_import.owl" uri="imports/ncbitaxon_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/pato_import.owl" uri="imports/pato_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/pr_import.owl" uri="imports/pr_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/ro_import.owl" uri="imports/ro_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1469044058614" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/uberon_import.owl" uri="imports/uberon_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/chebi.owl" uri="src/ontology/mirror/chebi.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/cl-bridge-to-uberon.owl" uri="src/ontology/bridge/cl-bridge-to-uberon.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="duplicate:http://purl.obolibrary.org/obo/cl.owl" uri="cl.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="duplicate:http://purl.obolibrary.org/obo/cl.owl" uri="cl_9b24db9b.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/cl/cl-base.owl" uri="cl-base.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/cl/cl-basic.owl" uri="cl-basic.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/cl/cl-full.owl" uri="src/ontology/cl-full.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/cl/cl-plus-nif.owl" uri="src/ontology/cl-plus-nif.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/cl/imports/chebi_import.owl" uri="imports/chebi_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/cl/imports/clo_import.owl" uri="imports/clo_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/cl/imports/go_import.owl" uri="imports/go_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="duplicate:http://purl.obolibrary.org/obo/cl/imports/imports/go_import.owl" uri="imports/go_seed.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="duplicate:http://purl.obolibrary.org/obo/cl/imports/imports/go_import.owl" uri="imports/uberon_seed.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/cl/imports/ncbitaxon_import.owl" uri="imports/ncbitaxon_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/cl/imports/pato_import.owl" uri="imports/pato_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/cl/imports/pr_import.owl" uri="imports/pr_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/cl/imports/ro_import.owl" uri="imports/ro_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/cl/imports/uberon_import.owl" uri="imports/uberon_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/cl/multispecies.owl" uri="src/ontology/multispecies.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/clo.owl" uri="src/ontology/mirror/clo.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/go.owl" uri="src/ontology/mirror/go.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/pato.owl" uri="src/ontology/mirror/pato.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/pr.owl" uri="src/ontology/mirror/pr.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/ro.owl" uri="src/ontology/mirror/ro.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://purl.obolibrary.org/obo/uberon.owl" uri="src/ontology/mirror/uberon.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="duplicate:http://www.gong.manchester.ac.uk/cto_norm.owl" uri="for_reference/Manchester_CL_normalisation_expt/owl/cto_norm.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="duplicate:http://www.gong.manchester.ac.uk/cto_norm.owl" uri="for_reference/Manchester_CL_normalisation_expt/owl/cto_norm_changes.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://www.gong.manchester.ac.uk/fma.owl" uri="for_reference/Manchester_CL_normalisation_expt/owl/fma.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://www.gong.manchester.ac.uk/go.owl" uri="for_reference/Manchester_CL_normalisation_expt/owl/go.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://www.gong.manchester.ac.uk/pato.owl" uri="for_reference/Manchester_CL_normalisation_expt/owl/pato.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://www.gong.manchester.ac.uk/ro.owl" uri="for_reference/Manchester_CL_normalisation_expt/owl/ro.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="http://www.semanticweb.org/davidos/ontologies/2019/3/robot_filter_test.owl" uri="src/ontology/test_out.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="shadowed:http://purl.obolibrary.org/obo/cl.owl" uri="src/ontology/cl.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="shadowed:http://purl.obolibrary.org/obo/cl.owl" uri="src/ontology/cl-edit_neg_exp.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="shadowed:http://purl.obolibrary.org/obo/cl/cl-base.owl" uri="src/ontology/cl-base.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="shadowed:http://purl.obolibrary.org/obo/cl/cl-basic.owl" uri="src/ontology/cl-simple.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="shadowed:http://purl.obolibrary.org/obo/cl/cl-basic.owl" uri="src/ontology/cl-bi2.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="shadowed:http://purl.obolibrary.org/obo/cl/cl-basic.owl" uri="src/ontology/cl-bi_test.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="shadowed:http://purl.obolibrary.org/obo/cl/cl-basic.owl" uri="src/ontology/cl-basic.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/chebi_import.owl" uri="src/ontology/imports/chebi_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/clo_import.owl" uri="src/ontology/imports/clo_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/go_import.owl" uri="src/ontology/imports/go_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/imports/go_import.owl" uri="src/ontology/imports/go_seed.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/imports/go_import.owl" uri="src/ontology/imports/uberon_seed.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/ncbitaxon_import.owl" uri="src/ontology/imports/ncbitaxon_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/pato_import.owl" uri="src/ontology/imports/pato_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/pr_import.owl" uri="src/ontology/imports/pr_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/pr_import.owl" uri="src/ontology/imports/pr_import.owl.tmp.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/ro_import.owl" uri="src/ontology/imports/ro_import.owl"/>
<uri id="Automatically generated entry, Timestamp=1556627907350" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/uberon_import.owl" uri="src/ontology/imports/uberon_import.owl"/>
</group>
</catalog>
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