NTRs #445

Open
jahilton opened this Issue Sep 16, 2016 · 2 comments

Comments

Projects

In progress in cell ontology project

3 participants

I tried submitting the following using TermGenie, but first got an ERROR for each term that the CL-UBERON connection could not be made, and then got an ERROR for each that a term with the same label already exists.

cell: regulatory T cell
location: blood
Name: inflammation-experienced regulatory T-cells
Definition: Foxp3-expression CD4 T cells isolated after exposure to inflammatory environment.
DefX_Ref: http://www.sciencedirect.com/science/article/pii/S0092867416309126

cell: regulatory T cell
location: blood
Name: activated regulatory T-cells
Definition: Foxp3-expression CD4 T cells isolated from an inflammatory environment.
DefX_Ref: http://www.sciencedirect.com/science/article/pii/S0092867416309126

cell: mesenchymal stem cell
location: lung mesenchyme
Name: pulmonary mesenchymal stem cell
Definition: Mesenchymal cells isolated from human lung tissue.
DefX_Ref: http://www.sciencellonline.com/human-pulmonary-mesenchymal-stem-cells.html
Comments: synonym:HPMSC

cell: fibroblast
location: bladder organ
Name: bladder stromal fibroblast
Definition: Fibroblasts isolated from human bladder tissue.
DefX_Ref: http://www.sciencellonline.com/human-bladder-stromal-fibroblasts.html
Comments: synonym:HBdSF

cell: B cell
location: blood
Name: B cell centroblast
Definition: B cells distinguish by their relatively larger size and high-level proliferative activity.
DefX_Ref: http://www.annualreviews.org/doi/10.1146/annurev-immunol-020711-075032

Contributor

cerivs commented Sep 20, 2016

centroblast is Bm3 B cell CL:0000965

I see that 'centroblast' is a related synonym of CL:0000965. However, the ENCODE project requires a term or exact synonym for 'centroblast'.
We're happy to work with you on the best course forward that you suggest.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment