Ensure correct annotation properties are always used #467

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cmungall opened this Issue Apr 17, 2017 · 0 comments

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cmungall commented Apr 17, 2017

It's easy in Protege to slip and use e.g. a namespace AP for a definition and vice versa.

We also need to enforce people using hasDbXref in axiom annotations for syns and defs.

I have fixed a bunch of these manually, but we need to implement checks

cmungall self-assigned this Apr 17, 2017

@cmungall cmungall added a commit that referenced this issue Apr 17, 2017

@cmungall cmungall Fixing namespace tag. See #467 2c868d0

@cmungall cmungall added a commit that referenced this issue May 19, 2017

@cmungall cmungall namespace and def APs were inverted. Fixed. See #467
gitowl ||  subject: http://purl.obolibrary.org/obo/CL_0001071
gitowl --  AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/CL_0001071> "cell")
gitowl ||      <http://purl.obolibrary.org/obo/CL_0001071> definition "cell"
gitowl --  AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "GOC:add") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "GO
gitowl ||      <http://purl.obolibrary.org/obo/CL_0001071> has_obo_namespace "An innate lymphoid cell that constituitively expresses RORgt and is capable of expressing IL17A and/or
gitowl ++  AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/CL_0001071> "cell")
gitowl ||      <http://purl.obolibrary.org/obo/CL_0001071> has_obo_namespace "cell"
gitowl ++  AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "GOC:add") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "GO
gitowl ||      <http://purl.obolibrary.org/obo/CL_0001071> definition "An innate lymphoid cell that constituitively expresses RORgt and is capable of expressing IL17A and/or IL-22."
3f8ec42
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