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cl ontology repository ====================== To find out more, visit * The website - http://cellontology.org * The GitHub site - https://github.com/obophenotype/cell-ontology ontology/ cl Core public ontology release * pre-reasoned * subsets of external ontologies MIREOTed in cl-basic Simple basic version of the ontology * pre-reasoned * NO external ontology terms and all inter-ontology links REMOVED Note that cl-basic.obo corresponds exactly with cell.obo in obo sourceforge CVS. cl-edit Editors version of the ontology Currently this corresponds to the primary cell.edit.obo in obo sourceforge CVS * NOT pre-reasoned * subsets of external ontologies MIREOTed in Note that .obo and .owl files are provided for each alternate version. These should be semantically equivalent, and use the new obo2owl translation URLs ==== The following URLs should be used for the two release versions: http://purl.obolibrary.org/obo/cl.owl http://purl.obolibrary.org/obo/cl.obo http://purl.obolibrary.org/obo/cl-basic.owl http://purl.obolibrary.org/obo/cl-basic.obo RUNNING THE RELEASE PIPELINE ============================ You will need: * obo-scripts http://github.com/cmungall/obo-scripts make sure the directory is in your PATH. E.g. if you cloned the above repo in your home dir, do this: export PATH="$PATH:$HOME/obo-scripts/" or for some shells: setenv PATH "$PATH:$HOME/obo-scripts/" * obo2obo available as part of the OboEdit distribution. On OS X this will be in your Applications dir, so you would type: export PATH="$PATH:/Applications/OBO-Edit2"