Browse files

* added inferred part ofs. See reference_0000032

 * anatomical wall fixes
 * Fixes #152
 * added relationships to cusps for some tooth types
 * changed some WP defs to MP defs
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1 parent 6615201 commit 13dc426b5ced7fe31e6ca7cbaa030304b8939eb5 @cmungall cmungall committed Nov 20, 2012
Showing with 3,192 additions and 1,239 deletions.
  1. +11 −3 Makefile
  2. +5 −1 make-bridge-ontologies-from-xrefs.pl
  3. +17 −1 mod/cl-bridge-to-aao.obo
  4. +64 −1 mod/cl-bridge-to-aao.owl
  5. +1 −1 mod/cl-bridge-to-bila.obo
  6. +1 −1 mod/cl-bridge-to-bila.owl
  7. +1 −1 mod/cl-bridge-to-bspo.obo
  8. +1 −1 mod/cl-bridge-to-bspo.owl
  9. +1 −1 mod/cl-bridge-to-caro.obo
  10. +1 −1 mod/cl-bridge-to-caro.owl
  11. +1 −1 mod/cl-bridge-to-ehdaa.obo
  12. +1 −1 mod/cl-bridge-to-ehdaa.owl
  13. +1 −1 mod/cl-bridge-to-ehdaa2.obo
  14. +1 −1 mod/cl-bridge-to-ehdaa2.owl
  15. +1 −1 mod/cl-bridge-to-emapa.obo
  16. +1 −1 mod/cl-bridge-to-emapa.owl
  17. +17 −1 mod/cl-bridge-to-fbbt.obo
  18. +105 −65 mod/cl-bridge-to-fbbt.owl
  19. +17 −1 mod/cl-bridge-to-fma.obo
  20. +740 −700 mod/cl-bridge-to-fma.owl
  21. +1 −1 mod/cl-bridge-to-go.obo
  22. +1 −1 mod/cl-bridge-to-go.owl
  23. +17 −1 mod/cl-bridge-to-hao.obo
  24. +64 −1 mod/cl-bridge-to-hao.owl
  25. +17 −1 mod/cl-bridge-to-kupo.obo
  26. +170 −130 mod/cl-bridge-to-kupo.owl
  27. +17 −1 mod/cl-bridge-to-ma.obo
  28. +50 −10 mod/cl-bridge-to-ma.owl
  29. +17 −1 mod/cl-bridge-to-mfo.obo
  30. +64 −1 mod/cl-bridge-to-mfo.owl
  31. +17 −1 mod/cl-bridge-to-ncithesaurus.obo
  32. +49 −9 mod/cl-bridge-to-ncithesaurus.owl
  33. +1 −1 mod/cl-bridge-to-nif_grossanatomy.obo
  34. +1 −1 mod/cl-bridge-to-nif_grossanatomy.owl
  35. +1 −1 mod/cl-bridge-to-og.obo
  36. +1 −1 mod/cl-bridge-to-og.owl
  37. +17 −1 mod/cl-bridge-to-spd.obo
  38. +64 −1 mod/cl-bridge-to-spd.owl
  39. +17 −1 mod/cl-bridge-to-tads.obo
  40. +64 −1 mod/cl-bridge-to-tads.owl
  41. +17 −1 mod/cl-bridge-to-tao.obo
  42. +64 −1 mod/cl-bridge-to-tao.owl
  43. +17 −1 mod/cl-bridge-to-tgma.obo
  44. +64 −1 mod/cl-bridge-to-tgma.owl
  45. +1 −1 mod/cl-bridge-to-vsao.obo
  46. +1 −1 mod/cl-bridge-to-vsao.owl
  47. +17 −1 mod/cl-bridge-to-wbbt.obo
  48. +71 −31 mod/cl-bridge-to-wbbt.owl
  49. +17 −1 mod/cl-bridge-to-xao.obo
  50. +50 −10 mod/cl-bridge-to-xao.owl
  51. +17 −1 mod/cl-bridge-to-zfa.obo
  52. +48 −8 mod/cl-bridge-to-zfa.owl
  53. +1 −1 mod/uberon-bridge-to-aao.obo
  54. +1 −1 mod/uberon-bridge-to-aao.owl
  55. +1 −1 mod/uberon-bridge-to-bila.obo
  56. +1 −1 mod/uberon-bridge-to-bila.owl
  57. +1 −1 mod/uberon-bridge-to-caro.obo
  58. +1 −1 mod/uberon-bridge-to-caro.owl
  59. +1 −1 mod/uberon-bridge-to-ehdaa.obo
  60. +1 −1 mod/uberon-bridge-to-ehdaa.owl
  61. +3 −3 mod/uberon-bridge-to-ehdaa2.obo
  62. +9 −3 mod/uberon-bridge-to-ehdaa2.owl
  63. +16 −6 mod/uberon-bridge-to-emapa.obo
  64. +25 −1 mod/uberon-bridge-to-emapa.owl
  65. +1 −1 mod/uberon-bridge-to-fbbt.obo
  66. +1 −1 mod/uberon-bridge-to-fbbt.owl
  67. +1 −1 mod/uberon-bridge-to-fma.obo
  68. +1 −1 mod/uberon-bridge-to-fma.owl
  69. +1 −1 mod/uberon-bridge-to-go.obo
  70. +1 −1 mod/uberon-bridge-to-go.owl
  71. +1 −1 mod/uberon-bridge-to-hao.obo
  72. +1 −1 mod/uberon-bridge-to-hao.owl
  73. +1 −1 mod/uberon-bridge-to-ma.obo
  74. +1 −1 mod/uberon-bridge-to-ma.owl
  75. +1 −1 mod/uberon-bridge-to-mfo.obo
  76. +1 −1 mod/uberon-bridge-to-mfo.owl
  77. +1 −1 mod/uberon-bridge-to-ncithesaurus.obo
  78. +1 −1 mod/uberon-bridge-to-ncithesaurus.owl
  79. +1 −1 mod/uberon-bridge-to-nif_grossanatomy.obo
  80. +1 −1 mod/uberon-bridge-to-nif_grossanatomy.owl
  81. +1 −1 mod/uberon-bridge-to-og.obo
  82. +1 −1 mod/uberon-bridge-to-og.owl
  83. +1 −1 mod/uberon-bridge-to-spd.obo
  84. +1 −1 mod/uberon-bridge-to-spd.owl
  85. +1 −1 mod/uberon-bridge-to-tads.obo
  86. +1 −1 mod/uberon-bridge-to-tads.owl
  87. +1 −1 mod/uberon-bridge-to-tao.owl
  88. +1 −1 mod/uberon-bridge-to-tgma.obo
  89. +1 −1 mod/uberon-bridge-to-tgma.owl
  90. +1 −1 mod/uberon-bridge-to-wbbt.obo
  91. +1 −1 mod/uberon-bridge-to-wbbt.owl
  92. +1 −1 mod/uberon-bridge-to-xao.obo
  93. +1 −1 mod/uberon-bridge-to-xao.owl
  94. +1 −1 mod/uberon-bridge-to-zfa.obo
  95. +1 −1 mod/uberon-bridge-to-zfa.owl
  96. +54 −1 reference/references-edit.omn
  97. +199 −35 uberon-simple.obo
  98. +202 −32 uberon-taxmod-amniote.obo
  99. +208 −37 uberon-with-isa.obo
  100. +208 −37 uberon.obo
  101. +207 −36 uberon_edit-implied.obo
View
14 Makefile
@@ -375,6 +375,13 @@ uberon-defs-from-mp.obo:
blip -i $< -u ontol_db findall -label '(class(C),setof_count(X,class_xref(C,X),Num))' -select 'C-Num' | sort -k3 -n > $@
# ----------------------------------------
+# Rules
+# ----------------------------------------
+
+ipo.obo: uberon.obo
+ blip-findall -i $< -consult util/partof.pro new_part_of/2 -label -no_pred -use_tabs | sort -u | tbl2obolinks.pl --rel part_of --source reference_0000032 - > $@
+
+# ----------------------------------------
# wikipedia
# ----------------------------------------
@@ -557,9 +564,9 @@ mod/uberon-bridge-to-vhog.owl: uberon_edit.obo
./util/mk-vhog-individs.pl organ_association_vHOG.txt uberon_edit.obo > $@.ofn && owltools $@.ofn -o file://`pwd`/$@
ext-xref.obo:
- blip-findall -r ZFA -i pe/tao-obsoletions.obo "entity_xref(Z,T),entity_replaced_by(T,U),id_idspace(U,'UBERON')" -select U-Z -no_pred | tbl2obolinks.pl --rel xref - > $@
-mod2/ext-bridge-to-zfa.obo: ext-xref.obo
- cd mod2 && ../make-bridge-ontologies-from-xrefs.pl ../uberon_edit.obo ../ext-ref.obo
+ blip-findall -r pext -r ZFA -i pe/tao-obsoletions.obo "entity_xref(Z,T),entity_replaced_by(T,U),\+id_idspace(Z,'UBERON'),id_idspace(U,'UBERON')" -select U-Z -label -use_tabs -no_pred | tbl2obolinks.pl --rel xref - > $@.tmp && cat ext-ref-hdr.obo $@.tmp > $@
+mod/uberon-ext-bridge-to-zfa.obo: ext-xref.obo
+ cd mod && ../make-bridge-ontologies-from-xrefs.pl -b uberon-ext ../ext-xref.obo
RELDIR=trunk
release:
@@ -609,3 +616,4 @@ fbbt.obo:
mod/fbbt-nd.obo: fbbt.obo
grep -v ^disjoint $< | perl -npe 's@^ontology: fbbt@ontology: uberon/fbbt-nd@' > $@.tmp && obo2obo $@.tmp -o $@
+
View
6 make-bridge-ontologies-from-xrefs.pl
@@ -40,6 +40,9 @@
elsif (/^id:\s*(\S+)/) {
$id = $1;
$n = '';
+ if (/^id:\s*\S+\s+\!\s+(.*)/) {
+ $n = $1;
+ }
}
elsif (/^name:\s*(.*)/) {
$n = $1;
@@ -82,7 +85,8 @@
foreach my $s (keys %fhmap) {
my $fh = $fhmap{$s};
- if ($tmap{$s}->[0] eq 'gd' && $base eq 'uberon') {
+ #if ($tmap{$s}->[0] eq 'gd' && $base eq 'uberon') {
+ if ($tmap{$s}->[0] eq 'gd') {
my ($t,$rel,$filler) = @{$tmap{$s}};
# hidden GCI
print $fh "[Term]\n";
View
18 mod/cl-bridge-to-aao.obo
@@ -1,7 +1,23 @@
ontology: uberon/bridge/cl-bridge-to-aao
-data-version: 2012-11-18
+data-version: 2012-11-20
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
+[Term]
+id: AAO:ENTITY
+name: AAO entity
+intersection_of: UBERON:0001062 ! anatomical entity
+intersection_of: part_of NCBITaxon:8292
+relationship: only_in_taxon NCBITaxon:8292
+
+[Typedef]
+id: part_of
+xref: BFO:0000050
+is_transitive: true
+
+[Typedef]
+id: only_in_taxon
+xref: RO:0002160
+
[Typedef]
id: http://purl.obolibrary.org/obo/aao#part_of
equivalent_to: BFO:0000050
View
65 mod/cl-bridge-to-aao.owl
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao/2012-11-18/uberon/bridge/cl-bridge-to-aao.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao/2012-11-20/uberon/bridge/cl-bridge-to-aao.owl"/>
</owl:Ontology>
@@ -269,11 +269,25 @@
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050">
+ <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000050</oboInOwl:hasDbXref>
+ <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part_of</oboInOwl:shorthand>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part_of</oboInOwl:id>
<owl:equivalentProperty rdf:resource="http://purl.obolibrary.org/obo/aao#part_of"/>
</owl:ObjectProperty>
+ <!-- http://purl.obolibrary.org/obo/RO_0002160 -->
+
+ <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002160">
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">RO:0002160</oboInOwl:hasDbXref>
+ <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">only_in_taxon</oboInOwl:shorthand>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">only_in_taxon</oboInOwl:id>
+ </owl:ObjectProperty>
+
+
+
<!-- http://purl.obolibrary.org/obo/RO_0002225 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002225">
@@ -295,6 +309,55 @@
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/aao#part_of">
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://purl.obolibrary.org/obo/aao#part_of</oboInOwl:id>
</owl:ObjectProperty>
+
+
+
+ <!--
+ ///////////////////////////////////////////////////////////////////////////////////////
+ //
+ // Classes
+ //
+ ///////////////////////////////////////////////////////////////////////////////////////
+ -->
+
+
+
+
+ <!-- http://purl.obolibrary.org/obo/AAO_ENTITY -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/AAO_ENTITY">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO entity</rdfs:label>
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0001062"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_8292"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002160"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_8292"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO:ENTITY</oboInOwl:id>
+ </owl:Class>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/NCBITaxon_8292 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_8292"/>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0001062 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001062"/>
</rdf:RDF>
View
2 mod/cl-bridge-to-bila.obo
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-bila
-data-version: 2012-11-18
+data-version: 2012-11-20
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Typedef]
View
2 mod/cl-bridge-to-bila.owl
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila/2012-11-18/uberon/bridge/cl-bridge-to-bila.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila/2012-11-20/uberon/bridge/cl-bridge-to-bila.owl"/>
</owl:Ontology>
View
2 mod/cl-bridge-to-bspo.obo
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-bspo
-data-version: 2012-11-18
+data-version: 2012-11-20
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Typedef]
View
2 mod/cl-bridge-to-bspo.owl
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo/2012-11-18/uberon/bridge/cl-bridge-to-bspo.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo/2012-11-20/uberon/bridge/cl-bridge-to-bspo.owl"/>
</owl:Ontology>
View
2 mod/cl-bridge-to-caro.obo
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-caro
-data-version: 2012-11-18
+data-version: 2012-11-20
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
View
2 mod/cl-bridge-to-caro.owl
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro/2012-11-18/uberon/bridge/cl-bridge-to-caro.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro/2012-11-20/uberon/bridge/cl-bridge-to-caro.owl"/>
</owl:Ontology>
View
2 mod/cl-bridge-to-ehdaa.obo
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-ehdaa
-data-version: 2012-11-18
+data-version: 2012-11-20
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Typedef]
View
2 mod/cl-bridge-to-ehdaa.owl
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa/2012-11-18/uberon/bridge/cl-bridge-to-ehdaa.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa/2012-11-20/uberon/bridge/cl-bridge-to-ehdaa.owl"/>
</owl:Ontology>
View
2 mod/cl-bridge-to-ehdaa2.obo
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-ehdaa2
-data-version: 2012-11-18
+data-version: 2012-11-20
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
View
2 mod/cl-bridge-to-ehdaa2.owl
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2/2012-11-18/uberon/bridge/cl-bridge-to-ehdaa2.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2/2012-11-20/uberon/bridge/cl-bridge-to-ehdaa2.owl"/>
</owl:Ontology>
View
2 mod/cl-bridge-to-emapa.obo
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-emapa
-data-version: 2012-11-18
+data-version: 2012-11-20
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
View
2 mod/cl-bridge-to-emapa.owl
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa/2012-11-18/uberon/bridge/cl-bridge-to-emapa.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa/2012-11-20/uberon/bridge/cl-bridge-to-emapa.owl"/>
</owl:Ontology>
View
18 mod/cl-bridge-to-fbbt.obo
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-fbbt
-data-version: 2012-11-18
+data-version: 2012-11-20
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
@@ -350,6 +350,22 @@ property_value: IAO:0000589 "visual pigment cell (sensu Nematoda and Protostomia
intersection_of: CL:0001658 ! visual pigment cell (sensu Nematoda and Protostomia)
intersection_of: part_of NCBITaxon:7227
+[Term]
+id: FBbt:ENTITY
+name: FBbt entity
+intersection_of: UBERON:0001062 ! anatomical entity
+intersection_of: part_of NCBITaxon:7227
+relationship: only_in_taxon NCBITaxon:7227
+
+[Typedef]
+id: part_of
+xref: BFO:0000050
+is_transitive: true
+
+[Typedef]
+id: only_in_taxon
+xref: RO:0002160
+
[Typedef]
id: http://purl.obolibrary.org/obo/fbbt#part_of
equivalent_to: BFO:0000050
View
170 mod/cl-bridge-to-fbbt.owl
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt/2012-11-18/uberon/bridge/cl-bridge-to-fbbt.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt/2012-11-20/uberon/bridge/cl-bridge-to-fbbt.owl"/>
</owl:Ontology>
@@ -275,11 +275,25 @@
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050">
+ <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000050</oboInOwl:hasDbXref>
+ <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part_of</oboInOwl:shorthand>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part_of</oboInOwl:id>
<owl:equivalentProperty rdf:resource="http://purl.obolibrary.org/obo/fbbt#part_of"/>
</owl:ObjectProperty>
+ <!-- http://purl.obolibrary.org/obo/RO_0002160 -->
+
+ <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002160">
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">RO:0002160</oboInOwl:hasDbXref>
+ <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">only_in_taxon</oboInOwl:shorthand>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">only_in_taxon</oboInOwl:id>
+ </owl:ObjectProperty>
+
+
+
<!-- http://purl.obolibrary.org/obo/RO_0002225 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002225">
@@ -304,12 +318,6 @@
- <!-- http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of -->
-
- <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
-
-
-
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
@@ -677,7 +685,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000025"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -697,7 +705,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000301"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -717,7 +725,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000066"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -737,7 +745,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000465"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -757,7 +765,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000394"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -777,7 +785,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000401"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -797,7 +805,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000396"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -817,7 +825,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000391"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -837,7 +845,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000395"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -857,7 +865,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000398"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -877,7 +885,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000373"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -897,7 +905,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000462"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -917,7 +925,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000306"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -937,7 +945,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000210"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -957,7 +965,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0001658"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -977,7 +985,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000086"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -997,7 +1005,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000088"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1017,7 +1025,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000026"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1037,7 +1045,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000023"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1057,7 +1065,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000441"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1077,7 +1085,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000477"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1097,7 +1105,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000579"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1117,7 +1125,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000671"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1137,7 +1145,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000674"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1157,7 +1165,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000087"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1177,7 +1185,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000020"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1197,7 +1205,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000017"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1217,7 +1225,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000657"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1237,7 +1245,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000018"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1257,7 +1265,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000019"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1277,7 +1285,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000464"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1297,7 +1305,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000487"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1317,7 +1325,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000307"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1337,7 +1345,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000474"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1357,7 +1365,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000486"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1377,7 +1385,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000385"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1397,7 +1405,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000387"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1417,7 +1425,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000187"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1437,7 +1445,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000056"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1457,7 +1465,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000540"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1477,7 +1485,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000101"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1497,7 +1505,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000099"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1517,7 +1525,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000561"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1537,7 +1545,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000116"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1557,7 +1565,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000381"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1577,7 +1585,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000850"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1597,7 +1605,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000124"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1617,7 +1625,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000030"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1637,7 +1645,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000031"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1657,7 +1665,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000468"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1677,7 +1685,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000405"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1697,7 +1705,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000469"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1717,7 +1725,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000374"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1737,7 +1745,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000372"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1757,7 +1765,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000382"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1777,7 +1785,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000409"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1797,7 +1805,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000407"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1817,7 +1825,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000300"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1829,9 +1837,41 @@
+ <!-- http://purl.obolibrary.org/obo/FBbt_ENTITY -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_ENTITY">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBbt entity</rdfs:label>
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0001062"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002160"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBbt:ENTITY</oboInOwl:id>
+ </owl:Class>
+
+
+
<!-- http://purl.obolibrary.org/obo/NCBITaxon_7227 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0001062 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001062"/>
</rdf:RDF>
View
18 mod/cl-bridge-to-fma.obo
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-fma
-data-version: 2012-11-18
+data-version: 2012-11-20
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
@@ -4256,6 +4256,22 @@ property_value: IAO:0000589 "hippocampal interneuron (post-embryonic human)" xsd
intersection_of: CL:1001569 ! hippocampal interneuron
intersection_of: part_of NCBITaxon:9606
+[Term]
+id: FMA:ENTITY
+name: FMA entity
+intersection_of: UBERON:0001062 ! anatomical entity
+intersection_of: part_of NCBITaxon:9606
+relationship: only_in_taxon NCBITaxon:9606
+
+[Typedef]
+id: part_of
+xref: BFO:0000050
+is_transitive: true
+
+[Typedef]
+id: only_in_taxon
+xref: RO:0002160
+
[Typedef]
id: http://purl.obolibrary.org/obo/fma#part_of
equivalent_to: BFO:0000050
View
1,440 mod/cl-bridge-to-fma.owl
740 additions, 700 deletions not shown because the diff is too large. Please use a local Git client to view these changes.
View
2 mod/cl-bridge-to-go.obo
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-go
-data-version: 2012-11-18
+data-version: 2012-11-20
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
View
2 mod/cl-bridge-to-go.owl
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-go.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-go/2012-11-18/uberon/bridge/cl-bridge-to-go.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-go/2012-11-20/uberon/bridge/cl-bridge-to-go.owl"/>
</owl:Ontology>
View
18 mod/cl-bridge-to-hao.obo
@@ -1,7 +1,23 @@
ontology: uberon/bridge/cl-bridge-to-hao
-data-version: 2012-11-18
+data-version: 2012-11-20
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
+[Term]
+id: HAO:ENTITY
+name: HAO entity
+intersection_of: UBERON:0001062 ! anatomical entity
+intersection_of: part_of NCBITaxon:7399
+relationship: only_in_taxon NCBITaxon:7399
+
+[Typedef]
+id: part_of
+xref: BFO:0000050
+is_transitive: true
+
+[Typedef]
+id: only_in_taxon
+xref: RO:0002160
+
[Typedef]
id: http://purl.obolibrary.org/obo/hao#part_of
equivalent_to: BFO:0000050
View
65 mod/cl-bridge-to-hao.owl
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-hao.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-hao/2012-11-18/uberon/bridge/cl-bridge-to-hao.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-hao/2012-11-20/uberon/bridge/cl-bridge-to-hao.owl"/>
</owl:Ontology>
@@ -269,11 +269,25 @@
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050">
+ <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000050</oboInOwl:hasDbXref>
+ <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part_of</oboInOwl:shorthand>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part_of</oboInOwl:id>
<owl:equivalentProperty rdf:resource="http://purl.obolibrary.org/obo/hao#part_of"/>
</owl:ObjectProperty>
+ <!-- http://purl.obolibrary.org/obo/RO_0002160 -->
+
+ <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002160">
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">RO:0002160</oboInOwl:hasDbXref>
+ <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">only_in_taxon</oboInOwl:shorthand>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">only_in_taxon</oboInOwl:id>
+ </owl:ObjectProperty>
+
+
+
<!-- http://purl.obolibrary.org/obo/RO_0002225 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002225">
@@ -295,6 +309,55 @@
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/hao#part_of">
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://purl.obolibrary.org/obo/hao#part_of</oboInOwl:id>
</owl:ObjectProperty>
+
+
+
+ <!--
+ ///////////////////////////////////////////////////////////////////////////////////////
+ //
+ // Classes
+ //
+ ///////////////////////////////////////////////////////////////////////////////////////
+ -->
+
+
+
+
+ <!-- http://purl.obolibrary.org/obo/HAO_ENTITY -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/HAO_ENTITY">
+ <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">HAO entity</rdfs:label>
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0001062"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7399"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <rdfs:subClassOf>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002160"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7399"/>
+ </owl:Restriction>
+ </rdfs:subClassOf>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">HAO:ENTITY</oboInOwl:id>
+ </owl:Class>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/NCBITaxon_7399 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_7399"/>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0001062 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001062"/>
</rdf:RDF>
View
18 mod/cl-bridge-to-kupo.obo
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-kupo
-data-version: 2012-11-18
+data-version: 2012-11-20
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
@@ -740,6 +740,22 @@ property_value: IAO:0000589 "kidney collecting duct intercalated cell (KUPO)" xs
intersection_of: CL:1001432 ! kidney collecting duct intercalated cell
intersection_of: part_of NCBITaxon:9606
+[Term]
+id: KUPO:ENTITY
+name: KUPO entity
+intersection_of: UBERON:0001062 ! anatomical entity
+intersection_of: part_of NCBITaxon:9606
+relationship: only_in_taxon NCBITaxon:9606
+
+[Typedef]
+id: part_of
+xref: BFO:0000050
+is_transitive: true
+
+[Typedef]
+id: only_in_taxon
+xref: RO:0002160
+
[Typedef]
id: http://purl.obolibrary.org/obo/kupo#part_of
equivalent_to: BFO:0000050
View
300 mod/cl-bridge-to-kupo.owl
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo/2012-11-18/uberon/bridge/cl-bridge-to-kupo.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo/2012-11-20/uberon/bridge/cl-bridge-to-kupo.owl"/>
</owl:Ontology>
@@ -275,11 +275,25 @@
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050">
+ <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000050</oboInOwl:hasDbXref>
+ <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part_of</oboInOwl:shorthand>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part_of</oboInOwl:id>
<owl:equivalentProperty rdf:resource="http://purl.obolibrary.org/obo/kupo#part_of"/>
</owl:ObjectProperty>
+ <!-- http://purl.obolibrary.org/obo/RO_0002160 -->
+
+ <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002160">
+ <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">RO:0002160</oboInOwl:hasDbXref>
+ <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">only_in_taxon</oboInOwl:shorthand>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">only_in_taxon</oboInOwl:id>
+ </owl:ObjectProperty>
+
+
+
<!-- http://purl.obolibrary.org/obo/RO_0002225 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002225">
@@ -304,12 +318,6 @@
- <!-- http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of -->
-
- <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
-
-
-
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
@@ -1067,7 +1075,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000000"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1087,7 +1095,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000497"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1107,7 +1115,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1001225"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1127,7 +1135,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000500"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1147,7 +1155,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000854"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1167,7 +1175,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000606"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1187,7 +1195,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0002584"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1207,7 +1215,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000504"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1227,7 +1235,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000505"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1247,7 +1255,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0002518"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1267,7 +1275,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000507"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1287,7 +1295,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000612"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1307,7 +1315,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000494"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1327,7 +1335,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000510"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1347,7 +1355,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000615"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1367,7 +1375,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000616"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1387,7 +1395,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000617"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1407,7 +1415,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000618"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1427,7 +1435,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000891"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1447,7 +1455,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000892"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1467,7 +1475,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000893"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1487,7 +1495,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000742"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1507,7 +1515,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0002173"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1527,7 +1535,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000450"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>
@@ -1547,7 +1555,7 @@
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_1000452"/>
<owl:Restriction>
- <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo#part_of"/>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</owl:intersectionOf>