diff --git a/uberon_edit.obo b/uberon_edit.obo index 1ec0e624a7..1d496e63b1 100644 --- a/uberon_edit.obo +++ b/uberon_edit.obo @@ -879,6 +879,7 @@ xref: UMLS:C0599332 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000985"} ! Vertebrata xref: CALOHA:TS-0703 subset: efo_slim +xref: UMLS:C0599332 {source="NIF_GrossAnatomy:birnlex_2703"} [Term] id: UBERON:0005385 @@ -1144,6 +1145,7 @@ xref: UMLS:C0032005 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000143"} ! Vertebrata xref: CALOHA:TS-0798 subset: efo_slim +xref: UMLS:C0032005 {source="NIF_GrossAnatomy:birnlex_1353"} [Term] id: UBERON:0011216 @@ -1200,6 +1202,8 @@ xref: UMLS:C0206417 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000399"} ! Vertebrata xref: CALOHA:TS-0808 subset: efo_slim +xref: UMLS:C0206417 {source="NIF_GrossAnatomy:birnlex_1111"} +xref: UMLS:C1305921 {source="NIF_GrossAnatomy:birnlex_1111"} [Term] id: UBERON:0000011 @@ -1242,6 +1246,8 @@ xref: UMLS:C0030510 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000755"} ! Vertebrata xref: CALOHA:TS-2094 subset: efo_slim +xref: UMLS:C0030510 {source="NIF_GrossAnatomy:birnlex_2517"} +xref: UMLS:C1305770 {source="NIF_GrossAnatomy:birnlex_2517"} [Term] id: UBERON:0000012 @@ -1304,6 +1310,8 @@ xref: UMLS:C0039044 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000384"} ! Vertebrata xref: CALOHA:TS-2050 subset: efo_slim +xref: UMLS:C0039044 {source="NIF_GrossAnatomy:birnlex_2516"} +xref: UMLS:C1269646 {source="NIF_GrossAnatomy:birnlex_2516"} [Term] id: UBERON:0000015 @@ -2022,6 +2030,8 @@ property_value: homology_notes "The eye of the adult lamprey is remarkably simil relationship: in_lateral_side_of UBERON:0000033 ! head xref: UMLS:C0015392 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000275"} ! Vertebrata +xref: UMLS:C0015392 {source="NIF_GrossAnatomy:birnlex_1169"} +xref: UMLS:C1280202 {source="NIF_GrossAnatomy:birnlex_1169"} [Term] id: UBERON:0010230 @@ -2639,6 +2649,7 @@ xref: UMLS:C0018670 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001644"} ! Vertebrata xref: CALOHA:TS-0436 subset: efo_slim +xref: UMLS:C0018670 {source="NIF_GrossAnatomy:birnlex_1230"} [Term] id: UBERON:0008816 ! embryonic head @@ -2964,6 +2975,7 @@ xref: UMLS:C0017070 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000222"} ! Vertebrata xref: CALOHA:TS-0954 subset: efo_slim +xref: UMLS:C0017070 {source="NIF_GrossAnatomy:birnlex_2596"} [Term] id: UBERON:0000125 @@ -3146,6 +3158,7 @@ is_a: UBERON:0002437 ! cerebral white matter relationship: part_of UBERON:0002421 {source="NIF_GrossAnatomy"} ! hippocampal formation xref: SCTID:279302004 ! Entire cerebral fornix xref: UMLS:C0458370 +xref: UMLS:C0152334 {source="NIF_GrossAnatomy:birnlex_705"} [Term] id: UBERON:0000053 @@ -3173,6 +3186,8 @@ relationship: part_of UBERON:0000966 ! retina xref: SCTID:362517001 ! Entire macula lutea xref: http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png xref: UMLS:C0450295 +xref: UMLS:C0450295 {source="NIF_GrossAnatomy:birnlex_2540"} +xref: UMLS:C1284755 {source="NIF_GrossAnatomy:birnlex_2540"} [Term] id: UBERON:0000055 @@ -5453,6 +5468,7 @@ xref: FMA:54597 ! Commissural nucleus of vagus nerve xref: NIF_GrossAnatomy:birnlex_2639 ! Commissural nucleus of vagus nerve is_a: UBERON:0011775 {source="FMA"} ! vagus nerve nucleus relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata +xref: UMLS:C0175528 {source="NIF_GrossAnatomy:birnlex_2639"} [Term] id: UBERON:0010127 @@ -5507,6 +5523,7 @@ xref: EHDAA2:0004649 ! dorsal motor nucleus of vagus relationship: immediate_transformation_of UBERON:0010127 {evidence="definitional"} ! future dorsal motor nucleus of vagus xref: UMLS:C0926535 xref: CALOHA:TS-2381 +xref: UMLS:C0152401 {source="NIF_GrossAnatomy:birnlex_2642"} [Term] id: UBERON:0010126 @@ -5549,6 +5566,8 @@ xref: EHDAA2:0004305 ! nucleus ambiguus relationship: immediate_transformation_of UBERON:0010126 {evidence="definitional"} ! future nucleus ambiguus xref: http://upload.wikimedia.org/wikipedia/commons/9/93/Gray695.png xref: UMLS:C0152400 +xref: UMLS:C0152400 {source="NIF_GrossAnatomy:birnlex_2650"} +xref: UMLS:C1281211 {source="NIF_GrossAnatomy:birnlex_2650"} [Term] id: UBERON:0000151 @@ -6390,6 +6409,7 @@ relationship: only_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia relationship: spatially_disjoint_from UBERON:0002421 {source="ABA"} ! hippocampal formation relationship: spatially_disjoint_from UBERON:0002264 {source="ABA"} ! olfactory bulb xref: http://upload.wikimedia.org/wikipedia/commons/7/77/Neocortex.jpg +xref: UMLS:C0175173 {source="NIF_GrossAnatomy:birnlex_2547"} [Term] id: UBERON:0000204 @@ -8318,6 +8338,7 @@ synonym: "striatum of neuraxis" EXACT [FMA:83683] synonym: "neuraxis striatum" EXACT [FMA:83683] property_value: has_relational_adjective "striatal" xsd:string relationship: part_of UBERON:0006098 {source="NIFSTD"} ! basal nuclear complex +xref: UMLS:C0162512 {source="NIF_GrossAnatomy:birnlex_1672"} [Term] @@ -8452,6 +8473,7 @@ xref: UMLS:C0007461 xref: CALOHA:TS-0121 subset: efo_slim property_value: external_definition "Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent[FMA:61833]." xsd:string {source="FMA:61833"} +xref: UMLS:C0007461 {source="NIF_GrossAnatomy:birnlex_1373"} [Term] id: UBERON:0001874 @@ -9813,6 +9835,7 @@ xref: BM:TU ! lateral tuberal nucleus xref: ABA:TU ! Tuberal nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002430 ! lateral hypothalamic area +xref: UMLS:C0086527 {source="NIF_GrossAnatomy:birnlex_1206"} [Term] id: UBERON:0000438 @@ -11449,6 +11472,7 @@ xref: VHOG:0001558 ! anterior commissure property_value: homology_notes "In all vertebrates the thin structure that connects the two halves of the telencephalon shows a ridge-like thickening at the basal side known as the anterior commissure.[well established][VHOG]" xsd:string {external_class="VHOG:0001558", ontology="VHOG", source="DOI:10.1111/j.1749-6632.1969.tb20432.x", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} xref: UMLS:C0152335 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001558"} ! Vertebrata +xref: UMLS:C0152335 {source="NIF_GrossAnatomy:birnlex_1557"} [Term] id: UBERON:0001909 @@ -11471,6 +11495,7 @@ relationship: part_of UBERON:0001904 {source="FMA"} ! habenula relationship: part_of UBERON:0003931 {source="ZFA-modified"} ! diencephalic white matter xref: SCTID:279335009 ! Entire habenular commissure xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png +xref: UMLS:C0152363 {source="NIF_GrossAnatomy:birnlex_1609"} [Term] id: UBERON:0000936 @@ -11496,6 +11521,7 @@ relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata synonym: "commissura posterior" RELATED LATIN [Wikipedia:Posterior_commissure] xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png xref: UMLS:C0152327 +xref: UMLS:C0152327 {source="NIF_GrossAnatomy:birnlex_1026"} [Term] id: UBERON:0005340 ! dorsal telencephalic commissure @@ -11529,6 +11555,7 @@ relationship: part_of UBERON:0002437 ! cerebral white matter synonym: "commissura hippocampi" EXACT LATIN [FMA:TA, FMA:61970] xref: SCTID:369115003 ! Entire hippocampal commissure xref: http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png +xref: UMLS:C0228287 {source="NIF_GrossAnatomy:birnlex_746"} [Term] id: UBERON:0002336 @@ -11565,6 +11592,7 @@ xref: UMLS:C0010090 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001608"} ! Vertebrata xref: CALOHA:TS-0180 subset: efo_slim +xref: UMLS:C0010090 {source="NIF_GrossAnatomy:birnlex_1087"} [Term] id: UBERON:0012112 @@ -12268,6 +12296,7 @@ xref: UMLS:C0037925 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000601"} ! Vertebrata xref: CALOHA:TS-0953 subset: efo_slim +xref: UMLS:C0037925 {source="NIF_GrossAnatomy:birnlex_1709"} [Term] id: UBERON:0005053 ! nerve cord @@ -12362,6 +12391,7 @@ synonym: "tractus opticus" RELATED LATIN [Wikipedia:Optic_tract] xref: http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray773.png xref: UMLS:C0152405 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001164"} ! Vertebrata +xref: UMLS:C0152405 {source="NIF_GrossAnatomy:birnlex_1684"} [Term] id: UBERON:0000959 @@ -12398,6 +12428,7 @@ property_value: external_definition "The point at which fibers of the optic nerv property_value: homology_notes "The chiasm has been studied in great detail in some animals, while in others relatively little or nothing is known. Although there are some gross architectural features that are conserved within some animals, such as birds and fish, the general picture is one of diversity. This review will attempt to consider the key features of such diversity of chiasmatic organisation in vertebrates and the mechanisms that sculpt them from the limited literature that is available. However, as so much research has been undertaken on the structure and development of the chiasm in laboratory animals, any review must consider the information that has been gleaned from them and hope that future studies will determine whether the features revealed in these animals, and the underlying mechanisms that generate them, have a common vertebrate plan.[uncertain][VHOG]" xsd:string {external_class="VHOG:0000190", ontology="VHOG", source="DOI:10.1016/j.preteyeres.2005.04.005 Jeffery G\, Erskine L\, Variations in the architecture and development of the vertebrate optic chiasm. Progress in retinal and eye research (2005)", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} xref: UMLS:C0029126 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000190"} ! Vertebrata +xref: UMLS:C0029126 {source="NIF_GrossAnatomy:birnlex_1416"} [Term] id: UBERON:0004904 @@ -12468,6 +12499,7 @@ xref: UMLS:C0029130 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000543"} ! Vertebrata xref: CALOHA:TS-0713 subset: efo_slim +xref: UMLS:C0029130 {source="NIF_GrossAnatomy:birnlex_1640"} [Term] id: UBERON:0000942 @@ -12828,6 +12860,8 @@ xref: UMLS:C0006104 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000157"} ! Vertebrata xref: CALOHA:TS-0095 subset: efo_slim +xref: UMLS:C0006104 {source="NIF_GrossAnatomy:birnlex_796"} +xref: UMLS:C1269537 {source="NIF_GrossAnatomy:birnlex_796"} [Term] id: UBERON:0008823 @@ -12884,6 +12918,7 @@ relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000722"} ! Vertebrata xref: CALOHA:TS-0091 subset: efo_slim property_value: external_definition "The cerebral cortex is a structure within the brain that plays a key role in memory, attention, perceptual awareness, thought, language, and consciousness. It constitutes the outermost layer of the cerebrum. In preserved brains, it has a grey color, hence the name 'grey matter'. Grey matter is formed by neurons and their unmyelinated fibers, whereas the white matter below the grey matter of the cortex is formed predominantly by myelinated axons interconnecting different regions of the central nervous system. The human cerebral cortex is 2–4 mm (0.08–0.16 inches) thick. The surface of the cerebral cortex is folded in large mammals, such that more than two-thirds of the cortical surface is buried in the grooves, called 'sulci. ' The phylogenetically most recent part of the cerebral cortex, the neocortex, also called isocortex, is differentiated into six horizontal layers; the more ancient part of the cerebral cortex, the hippocampus (also called archicortex), has at most three cellular layers, and is divided into subfields. Relative variations in thickness or cell type (among other parameters) allow us to distinguish between different neocortical architectonic fields. The geometry of at least some of these fields seems to be related to the anatomy of the cortical folds, and, for example, layers in the upper part of the cortical ridges seem to be more clearly differentiated than in its deeper parts. [WP,unvetted][Wikipedia:Cerebral_cortex]." xsd:string {source="Wikipedia:Cerebral_cortex"} +xref: UMLS:C0007776 {source="NIF_GrossAnatomy:birnlex_1494"} [Term] id: UBERON:0000957 @@ -13189,6 +13224,8 @@ xref: UMLS:C0035298 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000229"} ! Vertebrata xref: CALOHA:TS-0865 subset: efo_slim +xref: UMLS:C0035298 {source="NIF_GrossAnatomy:birnlex_1153"} +xref: UMLS:C1278894 {source="NIF_GrossAnatomy:birnlex_1153"} [Term] id: UBERON:0000967 @@ -14045,6 +14082,8 @@ xref: UMLS:C0032639 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001176"} ! Vertebrata xref: CALOHA:TS-0813 subset: efo_slim +xref: UMLS:C0032639 {source="NIF_GrossAnatomy:birnlex_733"} +xref: UMLS:C1280999 {source="NIF_GrossAnatomy:birnlex_733"} [Term] id: UBERON:0008811 ! intromittent organ @@ -16158,6 +16197,7 @@ xref: UMLS:C0927232 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000293"} ! Vertebrata xref: CALOHA:TS-0150 subset: efo_slim +xref: UMLS:C0927232 {source="NIF_GrossAnatomy:birnlex_1099"} [Term] id: UBERON:0001022 @@ -21862,6 +21902,8 @@ synonym: "segmenta cervicalia medullae spinalis [1-8" EXACT LATIN [FMA:TA, FMA:7 xref: SCTID:180960003 ! Entire cervical spinal cord def: "A spinal cord segment that adjacent_to a cervical region." [OBOL:automatic] xref: UMLS:C0581619 +xref: UMLS:C0581619 {source="NIF_GrossAnatomy:birnlex_1499"} +xref: UMLS:C1278837 {source="NIF_GrossAnatomy:birnlex_1499"} [Term] id: UBERON:0003038 ! thoracic spinal cord @@ -21883,6 +21925,7 @@ relationship: part_of UBERON:0008231 ! dorsal thoracic segment of trunk synonym: "segmenta thoracica medullae spinalis [1-12]" EXACT LATIN [FMA:TA, FMA:71167] xref: SCTID:278750009 ! Segment of thoracic spinal cord xref: UMLS:C0581620 +xref: UMLS:C0581620 {source="NIF_GrossAnatomy:birnlex_966"} [Term] id: UBERON:0002792 ! lumbar spinal cord @@ -21901,6 +21944,8 @@ intersection_of: part_of UBERON:0005462 ! lower back synonym: "segmenta lumbalia medullae spinalis [1-5]" EXACT LATIN [FMA:TA, FMA:71168] xref: SCTID:180962006 ! Entire lumbar spinal cord xref: UMLS:C0581621 +xref: UMLS:C0581620 {source="NIF_GrossAnatomy:birnlex_1704"} +xref: UMLS:C1278838 {source="NIF_GrossAnatomy:birnlex_1704"} [Term] id: UBERON:0005843 ! sacral spinal cord @@ -21916,6 +21961,8 @@ xref: ncithesaurus:Sacral_Spinal_Cord ! Sacral Spinal Cord xref: SCTID:244438003 ! Entire sacral spinal cord def: "A spinal cord segment that adjacent_to a sacral region." [OBOL:automatic] xref: UMLS:C0581669 +xref: UMLS:C0581669 {source="NIF_GrossAnatomy:birnlex_1275"} +xref: UMLS:C1280196 {source="NIF_GrossAnatomy:birnlex_1275"} [Term] id: UBERON:0005845 ! caudal segment of spinal cord @@ -30541,6 +30588,7 @@ xref: UMLS:C0036394 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000894"} ! Vertebrata xref: CALOHA:TS-0899 subset: efo_slim +xref: UMLS:C0036394 {source="NIF_GrossAnatomy:birnlex_1133"} [Term] id: UBERON:0001323 @@ -31972,6 +32020,7 @@ xref: UMLS:C0007806 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001278"} ! Vertebrata xref: CALOHA:TS-0130 subset: efo_slim +xref: UMLS:C0007806 {source="NIF_GrossAnatomy:birnlex_1798"} [Term] id: UBERON:0001360 @@ -39324,6 +39373,8 @@ property_value: external_definition "Segment of neural tree organ which is conti property_value: external_definition "The 1st cranial nerve. The olfactory nerve conveys the sense of smell. It is formed by the axons of OLFACTORY RECEPTOR NEURONS which project from the olfactory epithelium (in the nasal epithelium) to the OLFACTORY BULB[MESH:A08.800.800.120.640]." xsd:string {source="MESH:A08.800.800.120.640"} xref: UMLS:C0028938 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000703"} ! Vertebrata +xref: UMLS:C0028938 {source="NIF_GrossAnatomy:birnlex_1319"} +xref: UMLS:C1268984 {source="NIF_GrossAnatomy:birnlex_1319"} [Term] id: UBERON:0001580 @@ -41811,6 +41862,7 @@ property_value: external_definition "Somatic efferent fibers which innervate fou property_value: homology_notes "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {external_class="VHOG:0000692", ontology="VHOG", source="ISBN:978-0030223693 Liem KF\, Bemis WE\, Walker WF\, Grande L\, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43\, ISBN:978-0072528305 Kardong KV\, Vertebrates: Comparative Anatomy\, Function\, Evolution (2006) p.625", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} xref: UMLS:C0028864 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000692"} ! Vertebrata +xref: UMLS:C0028864 {source="NIF_GrossAnatomy:birnlex_1646"} [Term] id: UBERON:0002668 @@ -41824,6 +41876,7 @@ xref: FMA:72457 ! Central part of oculomotor nerve xref: NIF_GrossAnatomy:birnlex_1323 ! Oculomotor nerve fibers is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve relationship: part_of UBERON:0001943 ! midbrain tegmentum +xref: UMLS:C0175408 {source="NIF_GrossAnatomy:birnlex_1323"} [Term] id: UBERON:0001644 @@ -41867,6 +41920,7 @@ property_value: external_definition "Somatic efferent nerve which supplies a sin property_value: homology_notes "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {external_class="VHOG:0000705", ontology="VHOG", source="ISBN:978-0030223693 Liem KF\, Bemis WE\, Walker WF\, Grande L\, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43\, ISBN:978-0072528305 Kardong KV\, Vertebrates: Comparative Anatomy\, Function\, Evolution (2006) p.625", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} xref: UMLS:C0041159 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000705"} ! Vertebrata +xref: UMLS:C0041159 {source="NIF_GrossAnatomy:birnlex_1654"} [Term] id: UBERON:0001645 @@ -41916,6 +41970,7 @@ property_value: homology_notes "We conclude this section by listing some of the xref: UMLS:C0040996 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000704"} ! Vertebrata subset: efo_slim +xref: UMLS:C0040996 {source="NIF_GrossAnatomy:birnlex_869"} [Term] id: UBERON:0001646 @@ -41961,6 +42016,7 @@ property_value: external_definition "Somatic motor nerve which bifurcates innerv property_value: homology_notes "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {external_class="VHOG:0000697", ontology="VHOG", source="ISBN:978-0030223693 Liem KF\, Bemis WE\, Walker WF\, Grande L\, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43\, ISBN:978-0072528305 Kardong KV\, Vertebrates: Comparative Anatomy\, Function\, Evolution (2006) p.625", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} xref: UMLS:C0000741 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000697"} ! Vertebrata +xref: UMLS:C0000741 {source="NIF_GrossAnatomy:birnlex_876"} [Term] id: UBERON:0010271 @@ -42026,6 +42082,7 @@ property_value: external_definition "Slender nerve composed of branchiomotor and property_value: homology_notes "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {external_class="VHOG:0000706", ontology="VHOG", source="ISBN:978-0030223693 Liem KF\, Bemis WE\, Walker WF\, Grande L\, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43\, ISBN:978-0072528305 Kardong KV\, Vertebrates: Comparative Anatomy\, Function\, Evolution (2006) p.625", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} xref: UMLS:C0015462 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000706"} ! Vertebrata +xref: UMLS:C0015462 {source="NIF_GrossAnatomy:birnlex_827"} [Term] id: UBERON:0009675 @@ -42091,6 +42148,8 @@ property_value: external_definition "Nerve primarily composed of special somatic property_value: homology_notes "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {external_class="VHOG:0000695", ontology="VHOG", source="ISBN:978-0030223693 Liem KF\, Bemis WE\, Walker WF\, Grande L\, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43\, ISBN:978-0072528305 Kardong KV\, Vertebrates: Comparative Anatomy\, Function\, Evolution (2006) p.625", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} xref: UMLS:C0001162 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000695"} ! Vertebrata +xref: UMLS:C0001162 {source="NIF_GrossAnatomy:birnlex_890"} +xref: UMLS:C1278835 {source="NIF_GrossAnatomy:birnlex_890"} [Term] id: UBERON:0004727 @@ -42195,6 +42254,8 @@ property_value: external_definition "Small nerve consisting of branchiomotor and property_value: homology_notes "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG]" xsd:string {external_class="VHOG:0000701", ontology="VHOG", source="ISBN:978-0030223693 Liem KF\, Bemis WE\, Walker WF\, Grande L\, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43\, ISBN:978-0072528305 Kardong KV\, Vertebrates: Comparative Anatomy\, Function\, Evolution (2006) p.625", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} xref: UMLS:C0017679 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000701"} ! Vertebrata +xref: UMLS:C0017679 {source="NIF_GrossAnatomy:birnlex_899"} +xref: UMLS:C1305752 {source="NIF_GrossAnatomy:birnlex_899"} [Term] id: UBERON:0001650 @@ -42235,6 +42296,7 @@ property_value: external_definition "Cranial nerve that innervates muscles in th property_value: homology_notes "Cranial nerves XI and XII evolved in the common ancestor to amniotes (non-amphibian tetrapods) thus totalling twelve pairs.[well established][VHOG]" xsd:string {external_class="VHOG:0000693", ontology="VHOG", source="http://en.wikipedia.org/wiki/Cranial_nerves", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} xref: UMLS:C0020614 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000693"} ! Vertebrata +xref: UMLS:C0020614 {source="NIF_GrossAnatomy:birnlex_820"} [Term] id: UBERON:0001651 @@ -44307,6 +44369,8 @@ xref: UMLS:C0013443 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000330"} ! Vertebrata xref: CALOHA:TS-1165 subset: efo_slim +xref: UMLS:C0013443 {source="NIF_GrossAnatomy:birnlex_1062"} +xref: UMLS:C0521421 {source="NIF_GrossAnatomy:birnlex_1062"} [Term] id: UBERON:0011635 @@ -44653,6 +44717,7 @@ xref: NIF_GrossAnatomy:birnlex_2519 ! Vestibular organ intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0004681 ! vestibular system def: "An organ that is part of a vestibular system." [OBOL:automatic] +xref: UMLS:C0682674 {source="NIF_GrossAnatomy:birnlex_2519"} [Term] id: UBERON:0011005 @@ -44843,6 +44908,8 @@ xref: EFO:0004221 ! External ear xref: UMLS:C0013453 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000311"} ! Vertebrata subset: efo_slim +xref: UMLS:C0013453 {source="NIF_GrossAnatomy:birnlex_1705"} +xref: UMLS:C1269548 {source="NIF_GrossAnatomy:birnlex_1705"} [Term] id: UBERON:0006616 @@ -45093,6 +45160,7 @@ synonym: "statoacoustic VIII ganglion" RELATED [VHOG:0000696] property_value: homology_notes " (During the development of the inner ear in a vertebrate embryo) As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII.[well established][VHOG]" xsd:string {external_class="VHOG:0000696", ontology="VHOG", source="PMID:21452441 Park BY\, Saint-Jeannet JP\, Induction and Segregation of the Vertebrate Cranial Placodes. Developmental Biology (2010)", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000696"} ! Vertebrata subset: efo_slim +xref: UMLS:C0037959 {source="NIF_GrossAnatomy:birnlex_2564"} [Term] id: UBERON:0000395 @@ -45145,6 +45213,8 @@ relationship: part_of UBERON:0002827 {source="MA"} ! auditory ganglion xref: SCTID:244450009 ! Entire vestibular ganglion xref: UMLS:C0036286 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000682"} ! Vertebrata +xref: UMLS:C0036286 {source="NIF_GrossAnatomy:birnlex_2549"} +xref: UMLS:C0446706 {source="NIF_GrossAnatomy:birnlex_2549"} [Term] id: UBERON:0001701 @@ -45822,6 +45892,7 @@ xref: UMLS:C0228686 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001389"} ! Vertebrata subset: efo_slim property_value: external_definition "The nucleus of the oculomotor nerve (cranial nerve III)[XAO:0004389]." xsd:string {source="XAO:0004389"} +xref: UMLS:C0228686 {source="NIF_GrossAnatomy:birnlex_1240"} [Term] id: UBERON:0014523 @@ -45857,6 +45928,7 @@ xref: FMA:54524 ! Anterior medial nucleus of oculomotor nerve xref: NIF_GrossAnatomy:birnlex_1445 ! Anterior median oculomotor nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001715 {source="NIF_GrossAnatomy"} ! oculomotor nuclear complex +xref: UMLS:C0175382 {source="NIF_GrossAnatomy:birnlex_1445"} [Term] id: UBERON:0002934 @@ -45867,6 +45939,7 @@ xref: FMA:72422 ! Ventral oculomotor nucleus xref: NIF_GrossAnatomy:birnlex_713 ! Ventral oculomotor nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001715 {source="NIF_GrossAnatomy"} ! oculomotor nuclear complex +xref: UMLS:C0175380 {source="NIF_GrossAnatomy:birnlex_713"} [Term] id: UBERON:0014522 @@ -45887,6 +45960,7 @@ xref: FMA:72421 ! Medial oculomotor nucleus xref: NIF_GrossAnatomy:birnlex_813 ! Medial oculomotor nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001715 {source="NIF_GrossAnatomy"} ! oculomotor nuclear complex +xref: UMLS:C0175379 {source="NIF_GrossAnatomy:birnlex_813"} [Term] id: UBERON:0002970 @@ -45897,6 +45971,7 @@ xref: FMA:72420 ! Intermediate oculomotor nucleus xref: NIF_GrossAnatomy:birnlex_803 ! Intermediate oculomotor nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001715 {source="NIF_GrossAnatomy"} ! oculomotor nuclear complex +xref: UMLS:C0175378 {source="NIF_GrossAnatomy:birnlex_803"} [Term] id: UBERON:0002964 @@ -45907,6 +45982,7 @@ xref: FMA:62442 ! Dorsal oculomotor nucleus xref: NIF_GrossAnatomy:birnlex_793 ! Dorsal oculomotor nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001715 {source="NIF_GrossAnatomy"} ! oculomotor nuclear complex +xref: UMLS:C0175377 {source="NIF_GrossAnatomy:birnlex_793"} [Term] id: UBERON:0002141 @@ -45940,6 +46016,7 @@ relationship: spatially_disjoint_from UBERON:0002691 {source="ABA"} ! ventral te relationship: spatially_disjoint_from UBERON:0002438 {source="ABA"} ! ventral tegmental nucleus xref: SCTID:62088007 ! Edinger Westphal nucleus xref: TAO:0000244 ! nucleus Edinger-Westphal +xref: UMLS:C0228416 {source="NIF_GrossAnatomy:birnlex_822"} [Term] id: UBERON:0012315 @@ -46202,6 +46279,7 @@ relationship: spatially_disjoint_from UBERON:0002871 {source="ABA"} ! hypoglossa synonym: "nuclei vestibulares in medulla oblongata" EXACT LATIN [FMA:TA, FMA:72239] synonym: "nuclei vestibulares" RELATED LATIN [Wikipedia:Vestibular_nuclei] xref: CALOHA:TS-2078 +xref: UMLS:C0042600 {source="NIF_GrossAnatomy:birnlex_1337"} [Term] id: UBERON:0001721 @@ -46542,6 +46620,7 @@ property_value: homology_notes "Experients in amphibia have shown that an intrin xref: UMLS:C0039337 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000130"} ! Vertebrata xref: CALOHA:TS-1015 +xref: UMLS:C0039337 {source="NIF_GrossAnatomy:birnlex_4101"} [Term] id: UBERON:0014451 ! tongue taste bud @@ -46568,6 +46647,8 @@ relationship: part_of UBERON:0009471 {source="FMA-modified"} ! dorsum of tongue xref: ncithesaurus:Papilla_of_the_Tongue ! Papilla of the Tongue xref: SCTID:368728006 ! Entire lingual papillae xref: UMLS:C0226964 +xref: UMLS:C0226964 {source="NIF_GrossAnatomy:birnlex_4102"} +xref: UMLS:C1289183 {source="NIF_GrossAnatomy:birnlex_4102"} [Term] id: UBERON:0014389 @@ -46610,6 +46691,9 @@ relationship: has_part UBERON:0001727 {source="MP-abduced"} ! taste bud xref: SCTID:69517000 ! Entire vallate papillae of tongue xref: UMLS:C1182961 property_value: external_definition "Any one of the largest papilla of the tongue, 8 to 12 in number, arranged in the form of a V anterior to the sulcus terminalis of the tongu[BTO:0001705, Wikipedia:Vallate_papilla]e" xsd:string {source="BTO:0001705, Wikipedia:Vallate_papilla"} +xref: UMLS:C0226965 {source="NIF_GrossAnatomy:birnlex_4106_2"} +xref: UMLS:C1182961 {source="NIF_GrossAnatomy:birnlex_4106_2"} +xref: UMLS:C1267555 {source="NIF_GrossAnatomy:birnlex_4106_2"} [Term] id: UBERON:0013638 @@ -46650,6 +46734,7 @@ synonym: "lingual gustatory epithelium" EXACT [UBERON:cjm] xref: NIF_GrossAnatomy:birnlex_4099 ! Gustatory epithelium intersection_of: UBERON:0002926 ! gustatory epithelium intersection_of: part_of UBERON:0001723 ! tongue +xref: UMLS:C1179150 {source="NIF_GrossAnatomy:birnlex_4099"} [Term] id: UBERON:0014453 @@ -47708,6 +47793,8 @@ property_value: homology_notes "The tympanic cavity and auditory tube of an amni xref: UMLS:C0013455 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000312"} ! Vertebrata xref: CALOHA:TS-2233 +xref: UMLS:C0013455 {source="NIF_GrossAnatomy:birnlex_1695"} +xref: UMLS:C1268972 {source="NIF_GrossAnatomy:birnlex_1695"} [Term] id: UBERON:0001757 @@ -47878,6 +47965,8 @@ property_value: homology_notes "We conclude this section by listing some of the xref: UMLS:C0042276 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000737"} ! Vertebrata subset: efo_slim +xref: UMLS:C0042276 {source="NIF_GrossAnatomy:birnlex_801"} +xref: UMLS:C1305910 {source="NIF_GrossAnatomy:birnlex_801"} [Term] id: UBERON:0005362 @@ -49169,6 +49258,8 @@ property_value: external_definition "Twelve pairs of cranial nerves exit/enter t property_value: homology_notes "We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...).[well established][VHOG]" xsd:string {external_class="VHOG:0000279", ontology="VHOG", source="ISBN:978-0030223693 Liem KF\, Bemis WE\, Walker WF\, Grande L\, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.43", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} xref: UMLS:C0010268 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000279"} ! Vertebrata +xref: UMLS:C0010268 {source="NIF_GrossAnatomy:birnlex_1623"} +xref: UMLS:C1269897 {source="NIF_GrossAnatomy:birnlex_1623"} [Term] id: UBERON:0001786 @@ -49198,6 +49289,8 @@ property_value: homology_notes "Definition of fovea centralis should be consider xref: UMLS:C0016622 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001572"} ! Vertebrata xref: CALOHA:TS-2055 +xref: UMLS:C0016622 {source="NIF_GrossAnatomy:birnlex_2543"} +xref: UMLS:C0450290 {source="NIF_GrossAnatomy:birnlex_2543"} [Term] id: UBERON:0001781 @@ -51405,6 +51498,8 @@ xref: UMLS:C0022889 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000284"} ! Vertebrata xref: CALOHA:TS-0478 subset: efo_slim +xref: UMLS:C0022889 {source="NIF_GrossAnatomy:birnlex_1196"} +xref: UMLS:C1268973 {source="NIF_GrossAnatomy:birnlex_1196"} [Term] id: UBERON:0006937 @@ -52145,6 +52240,8 @@ property_value: homology_notes "In gnathostomes, each membranous labyrinth has t xref: UMLS:C1323110 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000507"} ! Vertebrata xref: CALOHA:TS-0152 +xref: UMLS:C1281166 {source="NIF_GrossAnatomy:birnlex_2562"} +xref: UMLS:C1323110 {source="NIF_GrossAnatomy:birnlex_2562"} [Term] id: UBERON:0001844 @@ -52192,6 +52289,8 @@ xref: UMLS:C0009195 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000691"} ! Vertebrata xref: CALOHA:TS-0151 subset: efo_slim +xref: UMLS:C0009195 {source="NIF_GrossAnatomy:birnlex_1190"} +xref: UMLS:C1278895 {source="NIF_GrossAnatomy:birnlex_1190"} [Term] id: UBERON:0007223 @@ -52541,6 +52640,7 @@ xref: UMLS:C0228174 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001639"} ! Vertebrata xref: CALOHA:TS-2007 subset: efo_slim +xref: UMLS:C0242202 {source="NIF_GrossAnatomy:birnlex_1042"} [Term] id: UBERON:0002812 @@ -52604,6 +52704,8 @@ xref: http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray729.png xref: UMLS:C0016733 xref: CALOHA:TS-0389 subset: efo_slim +xref: UMLS:C0016733 {source="NIF_GrossAnatomy:birnlex_928"} +xref: UMLS:C1268977 {source="NIF_GrossAnatomy:birnlex_928"} [Term] id: UBERON:0001871 @@ -52636,6 +52738,8 @@ xref: UMLS:C0039485 xref: CALOHA:TS-1020 subset: efo_slim is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0039485 {source="NIF_GrossAnatomy:birnlex_1160"} +xref: UMLS:C1268978 {source="NIF_GrossAnatomy:birnlex_1160"} [Term] id: UBERON:0001872 @@ -52671,6 +52775,7 @@ xref: UMLS:C0030560 xref: CALOHA:TS-0747 subset: efo_slim is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0030560 {source="NIF_GrossAnatomy:birnlex_1148"} [Term] id: UBERON:0006514 ! pallidum @@ -52744,6 +52849,7 @@ property_value: has_relational_adjective "pallidal" xsd:string xref: CALOHA:TS-2013 subset: efo_slim property_value: external_definition "Nucleus of brain which is located medially to the putamen and laterally to the internal capsule[FMA][FMA:61835]." xsd:string {source="FMA:61835"} +xref: UMLS:C0017651 {source="NIF_GrossAnatomy:birnlex_1234"} [Term] id: UBERON:0001876 @@ -52793,6 +52899,7 @@ relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001277"} ! Vertebrata xref: CALOHA:TS-0037 subset: efo_slim property_value: external_definition "Subdivision of basal ganglion of telencephalon which is an almond-shaped gray mass in the dorsomedial part of the temporal lob[FMA:61841]e" xsd:string {source="FMA:61841"} +xref: UMLS:C0002708 {source="NIF_GrossAnatomy:birnlex_1241"} [Term] id: UBERON:0001878 @@ -52809,6 +52916,7 @@ is_a: UBERON:0002308 ! nucleus of brain relationship: spatially_disjoint_from UBERON:0002667 {source="ABA"} ! lateral septal nucleus relationship: spatially_disjoint_from UBERON:0007630 {source="ABA"} ! septohippocampal nucleus relationship: part_of UBERON:0002663 {source="NIFSTD"} ! septal nuclear complex +xref: UMLS:C0694603 {source="NIF_GrossAnatomy:birnlex_730"} [Term] id: UBERON:0001879 @@ -52827,6 +52935,7 @@ relationship: part_of UBERON:0007629 {source="MA"} ! medial septal complex xref: ncithesaurus:Nucleus_of_Diagonal_Band ! nucleus of diagonal band xref: EHDAA2:0004708 ! nucleus of the diagonal band xref: UMLS:C0175227 +xref: UMLS:C0175227 {source="NIF_GrossAnatomy:birnlex_719"} [Term] id: UBERON:0001880 @@ -52854,6 +52963,7 @@ relationship: part_of UBERON:0002663 {source="FMA"} ! septal nuclear complex synonym: "nucleus striae terminalis" EXACT LATIN [FMA:TA, FMA:61884] subset: efo_slim relationship: part_of UBERON:0002743 {source="NIFSTD"} ! basal forebrain +xref: UMLS:C0228365 {source="NIF_GrossAnatomy:birnlex_724"} [Term] id: UBERON:0011173 @@ -52960,6 +53070,7 @@ relationship: part_of UBERON:0001883 ! anterior perforated substance synonym: "insulae olfactoriae" RELATED LATIN [Wikipedia:Islands_of_Calleja] synonym: "insula callejae" RELATED LATIN [Wikipedia:Islands_of_Calleja] xref: http://upload.wikimedia.org/wikipedia/commons/c/c0/Islands_of_Calleja_Rat.jpg +xref: UMLS:C0262264 {source="NIF_GrossAnatomy:birnlex_1113"} [Term] id: UBERON:0001882 @@ -53112,6 +53223,7 @@ relationship: part_of UBERON:0001869 ! cerebral hemisphere synonym: "capsula interna" RELATED LATIN [Wikipedia:Internal_capsule] xref: http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg xref: UMLS:C0152341 +xref: UMLS:C0152341 {source="NIF_GrossAnatomy:birnlex_1659"} [Term] id: UBERON:0014525 @@ -53224,6 +53336,7 @@ xref: UMLS:C0006121 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001457"} ! Vertebrata xref: CALOHA:TS-0093 subset: efo_slim +xref: UMLS:C0006121 {source="NIF_GrossAnatomy:birnlex_1565"} [Term] id: UBERON:0002028 @@ -53273,6 +53386,8 @@ xref: UMLS:C0035507 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000070"} ! Vertebrata xref: CALOHA:TS-0457 subset: efo_slim +xref: UMLS:C0035507 {source="NIF_GrossAnatomy:birnlex_942"} +xref: UMLS:C1522180 {source="NIF_GrossAnatomy:birnlex_942"} [Term] id: UBERON:0002037 @@ -53319,6 +53434,8 @@ xref: UMLS:C0007765 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000024"} ! Vertebrata xref: CALOHA:TS-0125 subset: efo_slim +xref: UMLS:C0007765 {source="NIF_GrossAnatomy:birnlex_1489"} +xref: UMLS:C1268981 {source="NIF_GrossAnatomy:birnlex_1489"} [Term] id: UBERON:0001890 @@ -53361,6 +53478,7 @@ xref: UMLS:C0085140 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000383"} ! Vertebrata xref: CALOHA:TS-0380 subset: efo_slim +xref: UMLS:C0085140 {source="NIF_GrossAnatomy:birnlex_1509"} [Term] id: UBERON:0001891 @@ -53411,6 +53529,7 @@ xref: UMLS:C0025462 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000069"} ! Vertebrata xref: CALOHA:TS-0630 subset: efo_slim +xref: UMLS:C0025462 {source="NIF_GrossAnatomy:birnlex_1667"} [Term] id: UBERON:0001893 @@ -53462,6 +53581,7 @@ relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000283"} ! Vertebrata xref: CALOHA:TS-1018 subset: efo_slim property_value: external_definition "Organ component of neuraxis that has as its parts the cerebral cortex, cerebral white matter, basal ganglia, septum and fornix, as well as subcortical gray and white matter structures[FMA:62000]." xsd:string {source="FMA:62000"} +xref: UMLS:C0039452 {source="NIF_GrossAnatomy:birnlex_1115"} [Term] id: UBERON:0001894 @@ -53518,6 +53638,7 @@ xref: UMLS:C0012144 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000318"} ! Vertebrata xref: CALOHA:TS-0199 subset: efo_slim +xref: UMLS:C0012144 {source="NIF_GrossAnatomy:birnlex_1503"} [Term] id: UBERON:0010092 @@ -53561,6 +53682,7 @@ xref: UMLS:C1516904 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000741"} ! Vertebrata xref: CALOHA:TS-2029 property_value: external_definition "Anterior part of the hindbrain ventral to the cerebellum[NIF_GrossAnatomy:birnlex_965]." xsd:string {source="NIF_GrossAnatomy:birnlex_965"} +xref: UMLS:C0376353 {source="NIF_GrossAnatomy:birnlex_965"} [Term] id: UBERON:0010096 @@ -53649,6 +53771,8 @@ xref: UMLS:C0025148 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000181"} ! Vertebrata xref: CALOHA:TS-0607 subset: efo_slim +xref: UMLS:C0025148 {source="NIF_GrossAnatomy:birnlex_957"} +xref: UMLS:C1269575 {source="NIF_GrossAnatomy:birnlex_957"} [Term] id: UBERON:0005807 @@ -53733,6 +53857,7 @@ xref: UMLS:C0039729 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000657"} ! Vertebrata xref: CALOHA:TS-1031 subset: efo_slim +xref: UMLS:C0039729 {source="NIF_GrossAnatomy:birnlex_954"} [Term] id: UBERON:0013683 @@ -53799,6 +53924,7 @@ xref: UMLS:C0020663 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000179"} ! Vertebrata xref: CALOHA:TS-0469 subset: efo_slim +xref: UMLS:C0020663 {source="NIF_GrossAnatomy:birnlex_734"} [Term] id: UBERON:0009976 @@ -53871,6 +53997,7 @@ xref: UMLS:C0152361 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000178"} ! Vertebrata xref: CALOHA:TS-2060 subset: efo_slim +xref: UMLS:C0152361 {source="NIF_GrossAnatomy:birnlex_1710"} [Term] id: UBERON:0001900 @@ -53903,6 +54030,7 @@ property_value: has_relational_adjective "subthalamic" xsd:string xref: UMLS:C0152349 xref: CALOHA:TS-2048 property_value: external_definition "Anterior part of the diencephalon that lies between the thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis[GO][GO:0021539]." xsd:string {source="GO:0021539"} +xref: UMLS:C0152349 {source="NIF_GrossAnatomy:birnlex_708"} [Term] id: UBERON:0001901 @@ -54033,6 +54161,7 @@ xref: SCTID:362389008 ! Entire habenula xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png property_value: external_definition "The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus.[TAO]" xsd:string {ontology="TAO", external_class="TAO:0000213", date_retrieved="2012-08-14", source="ZFIN:curator"} property_value: has_relational_adjective "habenular" xsd:string +xref: UMLS:C0152362 {source="NIF_GrossAnatomy:birnlex_1611"} [Term] id: UBERON:0000445 @@ -54109,6 +54238,7 @@ xref: UMLS:C0031939 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000051"} ! Vertebrata xref: CALOHA:TS-0789 subset: efo_slim +xref: UMLS:C0031939 {source="NIF_GrossAnatomy:birnlex_1184"} [Term] id: UBERON:0011768 @@ -54212,6 +54342,7 @@ is_a: UBERON:0005838 ! fasciculus of brain relationship: part_of UBERON:0000955 ! brain synonym: "fasciculus medialis telencephali" RELATED LATIN [Wikipedia:Medial_forebrain_bundle] xref: UMLS:C0025055 +xref: UMLS:C0025055 {source="NIF_GrossAnatomy:birnlex_908"} [Term] id: UBERON:0013614 @@ -54652,6 +54783,7 @@ xref: BTO:0002459 ! nucleus reuniens is_a: UBERON:0002308 ! nucleus of brain xref: SCTID:369164006 ! Entire reuniens nucleus of thalamus relationship: part_of UBERON:0002705 {source="NIFSTD"} ! midline nuclear group +xref: UMLS:C0228327 {source="NIF_GrossAnatomy:birnlex_770"} [Term] id: UBERON:0001922 @@ -54680,6 +54812,7 @@ relationship: spatially_disjoint_from UBERON:0002955 {source="ABA"} ! rhomboidal xref: ncithesaurus:Parafascicular_Nucleus_of_the_Thalamus ! Parafascicular Nucleus of the Thalamus xref: SCTID:279150008 ! Entire parafascicular nucleus of thalamus xref: UMLS:C0228352 +xref: UMLS:C0228352 {source="NIF_GrossAnatomy:birnlex_952"} [Term] id: UBERON:0001923 @@ -54704,6 +54837,7 @@ relationship: spatially_disjoint_from UBERON:0001922 {source="ABA"} ! parafascic relationship: spatially_disjoint_from UBERON:0002955 {source="ABA"} ! rhomboidal nucleus xref: SCTID:279161000 ! Entire central medial nucleus of thalamus relationship: part_of UBERON:0002965 {source="NIFSTD"} ! rostral intralaminar nuclei +xref: UMLS:C0920328 {source="NIF_GrossAnatomy:birnlex_971"} [Term] id: UBERON:0001924 @@ -54731,6 +54865,7 @@ relationship: spatially_disjoint_from UBERON:0002955 {source="ABA"} ! rhomboidal synonym: "nucleus paracentralis thalami" EXACT LATIN [FMA:TA, FMA:62172] xref: SCTID:279152000 ! Entire paracentral nucleus of thalamus relationship: part_of UBERON:0002965 {source="NIFSTD"} ! rostral intralaminar nuclei +xref: UMLS:C0228354 {source="NIF_GrossAnatomy:birnlex_981"} [Term] id: UBERON:0001925 @@ -54768,6 +54903,7 @@ xref: SCTID:279146001 ! Nucleus ventralis intermedius xref: ncithesaurus:Ventrolateral_Nucleus_of_the_Thalamus ! Ventrolateral Nucleus of the Thalamus xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png xref: UMLS:C0228339 +xref: UMLS:C0228339 {source="NIF_GrossAnatomy:birnlex_1237"} [Term] id: UBERON:0012174 @@ -54807,6 +54943,7 @@ xref: SCTID:362377006 ! Entire lateral geniculate body xref: ncithesaurus:External_Geniculate_Body ! External Geniculate Body xref: UMLS:C0086526 subset: efo_slim +xref: UMLS:C0086526 {source="NIF_GrossAnatomy:birnlex_1662"} [Term] id: UBERON:0001927 @@ -54837,6 +54974,7 @@ xref: SCTID:362378001 ! Entire medial geniculate body xref: ncithesaurus:Internal_Geniculate_Body ! Internal Geniculate Body xref: UMLS:C0086596 subset: efo_slim +xref: UMLS:C0086596 {source="NIF_GrossAnatomy:birnlex_1670"} [Term] id: UBERON:0001928 @@ -54873,6 +55011,8 @@ xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG property_value: external_definition "Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus. See Figure 7, Atlas of Early Zebrafish Brain Development.[TAO]" xsd:string {ontology="TAO", external_class="TAO:0000470", date_retrieved="2012-08-14", source="ZFIN:curator"} xref: CALOHA:TS-0822 subset: efo_slim +xref: UMLS:C0033063 {source="NIF_GrossAnatomy:birnlex_1706"} +xref: UMLS:C1284641 {source="NIF_GrossAnatomy:birnlex_1706"} [Term] id: UBERON:0007251 @@ -54913,6 +55053,8 @@ relationship: spatially_disjoint_from UBERON:0002706 {source="ABA"} ! posterior relationship: spatially_disjoint_from UBERON:0001935 {source="ABA"} ! ventromedial nucleus of hypothalamus relationship: spatially_disjoint_from UBERON:0002625 {source="ABA"} ! median preoptic nucleus xref: SCTID:369128005 ! Entire medial preoptic nucleus +xref: UMLS:C0175313 {source="NIF_GrossAnatomy:birnlex_706"} +xref: UMLS:C1289555 {source="NIF_GrossAnatomy:birnlex_706"} [Term] id: UBERON:0002625 @@ -54934,6 +55076,7 @@ relationship: spatially_disjoint_from UBERON:0002689 {source="ABA"} ! supraoptic relationship: spatially_disjoint_from UBERON:0007626 {source="ABA"} ! subparaventricular zone relationship: spatially_disjoint_from UBERON:0002034 {source="ABA"} ! suprachiasmatic nucleus relationship: spatially_disjoint_from UBERON:0002219 {source="ABA"} ! subfornical organ +xref: UMLS:C0259793 {source="NIF_GrossAnatomy:birnlex_1208"} [Term] id: UBERON:0001931 @@ -54958,6 +55101,8 @@ relationship: spatially_disjoint_from UBERON:0001933 {source="ABA"} ! retrochias relationship: spatially_disjoint_from UBERON:0001906 {source="ABA"} ! subthalamic nucleus relationship: spatially_disjoint_from UBERON:0001907 {source="ABA"} ! zona incerta xref: SCTID:369129002 ! Entire lateral preoptic nucleus +xref: UMLS:C0175312 {source="NIF_GrossAnatomy:birnlex_1722"} +xref: UMLS:C1289556 {source="NIF_GrossAnatomy:birnlex_1722"} [Term] id: UBERON:0002622 @@ -54972,6 +55117,8 @@ is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001928 ! preoptic area synonym: "nucleus preopticus periventricularis" EXACT LATIN [FMA:TA, FMA:62324] xref: SCTID:369127000 ! Entire preoptic periventricular nucleus +xref: UMLS:C0175314 {source="NIF_GrossAnatomy:birnlex_1201"} +xref: UMLS:C1289554 {source="NIF_GrossAnatomy:birnlex_1201"} [Term] id: UBERON:0007692 @@ -55036,6 +55183,7 @@ relationship: part_of UBERON:0002705 {source="FMA"} ! midline nuclear group relationship: spatially_disjoint_from UBERON:0002992 {source="ABA"} ! paratenial nucleus synonym: "nuclei paraventriculares thalami" EXACT LATIN [FMA:TA, FMA:62152] xref: SCTID:369163000 ! Entire paraventricular nucleus of thalamus +xref: UMLS:C0175253 {source="NIF_GrossAnatomy:birnlex_764"} [Term] id: UBERON:0000433 @@ -55085,6 +55233,7 @@ xref: SCTID:369131006 ! Entire paraventricular nucleus synonym: "nuclei paraventricularis hypothalami" RELATED LATIN [Wikipedia:Paraventricular_nucleus_of_hypothalamus] xref: http://upload.wikimedia.org/wikipedia/commons/e/ef/PVNss.jpg subset: efo_slim +xref: UMLS:C0030532 {source="NIF_GrossAnatomy:birnlex_1407"} [Term] id: UBERON:0001932 @@ -55123,6 +55272,7 @@ synonym: "nucleus arcuatus hypothalami" RELATED LATIN [Wikipedia:Arcuate_nucleus xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG xref: UMLS:C0003741 relationship: part_of UBERON:0002555 {source="NIFSTD"} ! intermediate hypothalamic region +xref: UMLS:C0003741 {source="NIF_GrossAnatomy:birnlex_1638"} [Term] id: UBERON:0002865 @@ -55149,6 +55299,7 @@ xref: FMA:72609 ! Arcuate nucleus of medulla xref: NIF_GrossAnatomy:birnlex_2635 ! Arcuate nucleus of medulla is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001896 ! medulla oblongata +xref: UMLS:C0228544 {source="NIF_GrossAnatomy:birnlex_2635"} [Term] id: UBERON:0001933 @@ -55165,6 +55316,7 @@ relationship: spatially_disjoint_from UBERON:0002430 {source="ABA"} ! lateral hy relationship: spatially_disjoint_from UBERON:0001931 {source="ABA"} ! lateral preoptic nucleus relationship: spatially_disjoint_from UBERON:0001906 {source="ABA"} ! subthalamic nucleus relationship: spatially_disjoint_from UBERON:0001907 {source="ABA"} ! zona incerta +xref: UMLS:C0262326 {source="NIF_GrossAnatomy:birnlex_1569"} [Term] id: UBERON:0001934 @@ -55200,6 +55352,7 @@ relationship: spatially_disjoint_from UBERON:0002219 {source="ABA"} ! subfornica xref: SCTID:369134003 ! Entire dorsomedial hypothalamic nucleus synonym: "nucleus dorsomedialis hypothalamicae intermediae" RELATED LATIN [Wikipedia:Dorsomedial_hypothalamic_nucleus] xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG +xref: UMLS:C0013055 {source="NIF_GrossAnatomy:birnlex_1558"} [Term] id: UBERON:0001935 @@ -55230,6 +55383,7 @@ relationship: spatially_disjoint_from UBERON:0002206 {source="ABA"} ! mammillary relationship: spatially_disjoint_from UBERON:0002035 {source="ABA"} ! medial preoptic nucleus relationship: spatially_disjoint_from UBERON:0002706 {source="ABA"} ! posterior nucleus of hypothalamus xref: SCTID:369124007 ! Entire ventromedial hypothalamic nucleus +xref: UMLS:C0042518 {source="NIF_GrossAnatomy:birnlex_1572"} [Term] id: UBERON:0001936 @@ -55257,6 +55411,8 @@ relationship: spatially_disjoint_from UBERON:0001939 {source="ABA"} ! medial mam relationship: spatially_disjoint_from UBERON:0001940 {source="ABA"} ! supramammillary nucleus xref: SCTID:369122006 ! Entire tuberomammillary nucleus synonym: "mammilloinfundibular nucleus" EXACT [FMA:62335] +xref: UMLS:C0228377 {source="NIF_GrossAnatomy:birnlex_1271"} +xref: UMLS:C1289549 {source="NIF_GrossAnatomy:birnlex_1271"} [Term] id: UBERON:0001937 @@ -55273,6 +55429,7 @@ xref: EV:0100234 ! lateral nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002430 ! lateral hypothalamic area xref: SCTID:360452004 ! Entire lateral hypothalamic nucleus +xref: UMLS:C0086527 {source="NIF_GrossAnatomy:birnlex_1199"} [Term] id: UBERON:0001938 @@ -55292,6 +55449,8 @@ relationship: spatially_disjoint_from UBERON:0001940 {source="ABA"} ! supramammi relationship: spatially_disjoint_from UBERON:0001936 {source="ABA"} ! tuberomammillary nucleus synonym: "nucleus mammillaris lateralis" EXACT LATIN [FMA:TA, FMA:62341] xref: SCTID:369143007 ! Entire lateral mammillary nucleus +xref: UMLS:C0152357 {source="NIF_GrossAnatomy:birnlex_1460"} +xref: UMLS:C1289570 {source="NIF_GrossAnatomy:birnlex_1460"} [Term] id: UBERON:0001939 @@ -55311,6 +55470,8 @@ relationship: spatially_disjoint_from UBERON:0001940 {source="ABA"} ! supramammi relationship: spatially_disjoint_from UBERON:0001936 {source="ABA"} ! tuberomammillary nucleus synonym: "nucleus mammillaris medialis" EXACT LATIN [FMA:TA, FMA:62342] xref: SCTID:369141009 ! Entire medial mammillary nucleus +xref: UMLS:C0175329 {source="NIF_GrossAnatomy:birnlex_1299"} +xref: UMLS:C1289568 {source="NIF_GrossAnatomy:birnlex_1299"} [Term] id: UBERON:0001940 @@ -55326,6 +55487,8 @@ relationship: spatially_disjoint_from UBERON:0001938 {source="ABA"} ! lateral ma relationship: spatially_disjoint_from UBERON:0001939 {source="ABA"} ! medial mammillary nucleus relationship: spatially_disjoint_from UBERON:0001936 {source="ABA"} ! tuberomammillary nucleus xref: SCTID:369144001 ! Entire supramammillary nucleus +xref: UMLS:C0228378 {source="NIF_GrossAnatomy:birnlex_1479"} +xref: UMLS:C1289571 {source="NIF_GrossAnatomy:birnlex_1479"} [Term] id: UBERON:0001941 @@ -55346,6 +55509,7 @@ relationship: part_of UBERON:0001904 ! habenula relationship: spatially_disjoint_from UBERON:0001942 {source="ABA"} ! medial habenular nucleus relationship: spatially_disjoint_from UBERON:0001905 {source="ABA"} ! pineal body xref: SCTID:361538005 ! Lateral habenular nucleus +xref: UMLS:C0228390 {source="NIF_GrossAnatomy:birnlex_1438"} [Term] id: UBERON:0001942 @@ -55366,6 +55530,7 @@ is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001904 ! habenula relationship: spatially_disjoint_from UBERON:0001941 {source="ABA"} ! lateral habenular nucleus relationship: spatially_disjoint_from UBERON:0001905 {source="ABA"} ! pineal body +xref: UMLS:C0228389 {source="NIF_GrossAnatomy:birnlex_1431"} [Term] id: UBERON:0006794 ! visual processing part of nervous system @@ -55423,6 +55588,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray712.png property_value: homology_notes "Together, our results reveal a shared basic organization in the tegmental domains of the diencephalon and midbrain of developing lamprey, indicating early appearance of the domain in vertebrate phylogeny.[well established][VHOG]" xsd:string {external_class="VHOG:0001367", ontology="VHOG", source="DOI:10.1016/j.brainresbull.2005.05.001 Villar-Cheda B\, Abalo XM\, Anadon R\, Rodicio MC\, The tegmental proliferation region in the sea lamprey. Brain Research Bulletin (2005)", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001367"} ! Vertebrata subset: efo_slim +xref: UMLS:C0039441 {source="NIF_GrossAnatomy:birnlex_1200"} [Term] id: UBERON:0001944 @@ -55459,6 +55625,7 @@ synonym: "area pretectalis" EXACT LATIN [FMA:TA, FMA:62402] synonym: "nuclei pretectales" EXACT LATIN [FMA:TA, FMA:62402] xref: SCTID:416333003 ! Pretectal area property_value: external_definition "A narrow, transversely oriented rostral zone of the mesencephalic tectum, bounded caudally by the superior colliculus, rostrally by the habenular trigone, and laterally by the pulvinar thalami; the pretectal area contains several nuclei that receive fibers from the optic tract; it has bilateral efferent connections with the Edinger-Westphal nucleus of the oculomotor nuclear complex by way of which it mediates the pupillary light refle[MP:0009637]x" xsd:string {source="MP:0009637"} +xref: UMLS:C0175354 {source="NIF_GrossAnatomy:birnlex_703"} [Term] id: UBERON:0014450 ! pretectal nucleus @@ -55524,6 +55691,7 @@ xref: VHOG:0001701 ! nucleus isthmi synonym: "nucleus isthmi" RELATED [VHOG:0001701] property_value: homology_notes "Nucleus isthmi is present in the isthmus in most vertebrates. It is called the parabigeminal nucleus in mammals (reference 1); In sum, our results show that the origin of neurons of some tegmental hindbrain nuclei, namely, nucleus isthmi/superior reticular nucleus and secondary gustatory/viscerosensory nucleus is in the URL (upper rhombic lip), and that the temporal order of cell types produced by the URL and their developmental program are conserved among vertebrate species (reference 2).[well established][VHOG]" xsd:string {external_class="VHOG:0001701", ontology="VHOG", source="ISBN:978-0471210054 Butler AB\, Hodos W\, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.272\, DOI:10.1002/cne.22364 Volkmann K\, Chen YY\, Harris MP\, Wullimann MF\, Köster RW\, The zebrafish cerebellar upper rhombic lip generates tegmental hindbrain nuclei by long-distance migration in an evolutionary conserved manner. The Journal of Comparative Neurology (2010)", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001701"} ! Vertebrata +xref: UMLS:C0262301 {source="NIF_GrossAnatomy:birnlex_1007"} [Term] id: UBERON:0002314 ! midbrain tectum @@ -55559,6 +55727,7 @@ property_value: homology_notes "The tectum - a multisensory, topologically mappe xref: UMLS:C0039433 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001388"} ! Vertebrata subset: efo_slim +xref: UMLS:C0039433 {source="NIF_GrossAnatomy:birnlex_1032"} [Term] id: UBERON:0001945 @@ -55601,6 +55770,7 @@ property_value: external_definition "The brain structure where the two separate property_value: external_definition "The roof of the midbrain, morphologically visible by the end of the segmentation period. Kimmel et al, 1995.[TAO]" xsd:string {ontology="TAO", external_class="TAO:0000445", date_retrieved="2012-08-14", source="ZFIN:curator"} relationship: in_lateral_side_of UBERON:0002314 {source="FMA-abduced-lr"} ! midbrain tectum subset: efo_slim +xref: UMLS:C0228405 {source="NIF_GrossAnatomy:birnlex_1040"} [Term] id: UBERON:0001946 @@ -55627,6 +55797,7 @@ synonym: "colliculus inferior" RELATED LATIN [Wikipedia:Inferior_colliculus] xref: http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png relationship: in_lateral_side_of UBERON:0002314 {source="FMA-abduced-lr"} ! midbrain tectum subset: efo_slim +xref: UMLS:C0228411 {source="NIF_GrossAnatomy:birnlex_806"} [Term] id: UBERON:0002580 @@ -55646,6 +55817,7 @@ is_a: UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0001945 ! superior colliculus synonym: "brachium colliculi superioris" RELATED LATIN [Wikipedia:Brachium_of_superior_colliculus] xref: http://upload.wikimedia.org/wikipedia/commons/2/29/Human_brainstem-thalamus_posterior_view_description.JPG +xref: UMLS:C0175368 {source="NIF_GrossAnatomy:birnlex_1065"} [Term] id: UBERON:0003025 @@ -55667,6 +55839,7 @@ is_a: UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0001946 ! inferior colliculus synonym: "brachium colliculi inferioris" RELATED LATIN [Wikipedia:Brachium_of_inferior_colliculus] xref: http://upload.wikimedia.org/wikipedia/commons/2/29/Human_brainstem-thalamus_posterior_view_description.JPG +xref: UMLS:C0175372 {source="NIF_GrossAnatomy:birnlex_929"} [Term] id: UBERON:0002583 @@ -55693,6 +55866,7 @@ intersection_of: part_of UBERON:0001945 ! superior colliculus relationship: part_of UBERON:0006786 {source="NIF_GrossAnatomy-modified"} ! white matter of superior colliculus xref: SCTID:369258008 ! Entire commissure of superior colliculus xref: TAO:0000684 ! intertectal commissure +xref: UMLS:C0152366 {source="NIF_GrossAnatomy:birnlex_1073"} [Term] id: UBERON:0006783 ! layer of superior colliculus @@ -55929,6 +56103,7 @@ xref: SCTID:279287006 ! Entire red nucleus xref: EHDAA2:0004706 ! red nucleus synonym: "nucleus ruber" RELATED LATIN [Wikipedia:Red_nucleus] xref: http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png +xref: UMLS:C0034910 {source="NIF_GrossAnatomy:birnlex_1478"} [Term] id: UBERON:0014645 @@ -56038,6 +56213,7 @@ relationship: only_in_taxon NCBITaxon:40674 {source="Wikipedia:Hippocampus"} ! M relationship: spatially_disjoint_from UBERON:0001950 {source="ABA"} ! neocortex relationship: spatially_disjoint_from UBERON:0002264 {source="ABA"} ! olfactory bulb xref: SCTID:422867004 ! Structure of hippocampal formation +xref: UMLS:C0175202 {source="NIF_GrossAnatomy:birnlex_715"} [Term] id: UBERON:0001954 @@ -56091,6 +56267,7 @@ xref: UMLS:C0019564 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001177"} ! Vertebrata xref: CALOHA:TS-0460 subset: efo_slim +xref: UMLS:C0019564 {source="NIF_GrossAnatomy:birnlex_721"} [Term] id: UBERON:0003876 @@ -56136,6 +56313,7 @@ synonym: "regio i hippocampi proprii" EXACT LATIN [FMA:TA, FMA:74042] xref: UMLS:C0694598 subset: efo_slim def: "A cytoarchitectural subregion of the Ammon's horn region of the hippocampal formation. The principal cell type is the pyramidal neuron. The pyramidal neurons of CA1 receive projections from pyramidal neurons of CA3 via the Schaffer collaterals., A cytoarchitectural subregion of the Ammon's horn region of the hippocampal formation . The principal cell type is the pyramidal neuron. The pyramidal neurons of CA1 receive projections from pyramidal neurons of CA3 via the Schaffer collaterals." [NIF_GrossAnatomy:birnlex_1197] +xref: UMLS:C0694598 {source="NIF_GrossAnatomy:birnlex_1197"} [Term] id: UBERON:0003882 @@ -56163,6 +56341,7 @@ synonym: "regio ii hippocampi proprii" EXACT LATIN [FMA:TA, FMA:74044] xref: UMLS:C0694599 subset: efo_slim def: "Part of hippocampus proper bounded by areas CA3 and CA1, characterized by a narrow layer of large pyramidal cells, similar in size to CA3 pyramidal cells, but which lack the mossy fiber input from the dentate gyrus (adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 460)" [NIF_GrossAnatomy:birnlex_1362] +xref: UMLS:C0694599 {source="NIF_GrossAnatomy:birnlex_1362"} [Term] id: UBERON:0003883 @@ -56194,6 +56373,7 @@ synonym: "regio hippocampi proprii III; regio III cornus ammonis; CA3" RELATED L xref: http://upload.wikimedia.org/wikipedia/commons/a/ab/HippocampalRegions.jpg xref: UMLS:C0694600 subset: efo_slim +xref: UMLS:C0694600 {source="NIF_GrossAnatomy:birnlex_1204"} [Term] id: UBERON:0003884 @@ -56571,6 +56751,7 @@ relationship: spatially_disjoint_from UBERON:0007412 {source="ABA"} ! midbrain r synonym: "pars compacta substantiae nigrae" EXACT LATIN [FMA:TA, FMA:62907] xref: ncithesaurus:Pars_Compacta ! pars compacta xref: UMLS:C0175412 +xref: UMLS:C0175412 {source="NIF_GrossAnatomy:birnlex_990"} [Term] id: UBERON:0001966 ! substantia nigra pars reticulata @@ -56601,6 +56782,7 @@ relationship: spatially_disjoint_from UBERON:0002995 {source="ABA"} ! substantia relationship: spatially_disjoint_from UBERON:0002691 {source="ABA"} ! ventral tegmental area relationship: spatially_disjoint_from UBERON:0002438 {source="ABA"} ! ventral tegmental nucleus synonym: "pars reticularis substantiae nigrae" EXACT LATIN [FMA:TA, FMA:62908] +xref: UMLS:C0175413 {source="NIF_GrossAnatomy:birnlex_968"} [Term] id: UBERON:0007825 @@ -57902,6 +58084,7 @@ relationship: develops_from UBERON:0005428 {source="ZFA", source="Wikipedia", so xref: EHDAA2:0004202 ! enteric nervous system xref: CALOHA:TS-2093 subset: efo_slim +xref: UMLS:C0206111 {source="NIF_GrossAnatomy:birnlex_1166"} [Term] id: UBERON:0002006 @@ -58224,6 +58407,8 @@ property_value: external_definition "Cranial nerve that innervates the sternocle property_value: homology_notes "Cranial nerves XI and XII evolved in the common ancestor to amniotes (non-amphibian tetrapods) thus totalling twelve pairs.[well established][VHOG]" xsd:string {external_class="VHOG:0000699", ontology="VHOG", source="http://en.wikipedia.org/wiki/Cranial_nerves", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} xref: UMLS:C0000905 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000699"} ! Vertebrata +xref: UMLS:C0000905 {source="NIF_GrossAnatomy:birnlex_812"} +xref: UMLS:C1305777 {source="NIF_GrossAnatomy:birnlex_812"} [Term] id: UBERON:0009673 @@ -58314,6 +58499,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray727_occipital_lobe. xref: UMLS:C0028785 xref: CALOHA:TS-0693 subset: efo_slim +xref: UMLS:C0028785 {source="NIF_GrossAnatomy:birnlex_1136"} [Term] id: UBERON:0002022 @@ -58347,6 +58533,7 @@ relationship: part_of UBERON:0000956 {source="NIF", source="BTO"} ! cerebral cor relationship: part_of UBERON:0001869 {source="FMA"} ! cerebral hemisphere xref: SCTID:279201009 ! Entire insula xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray731.png +xref: UMLS:C0021640 {source="NIF_GrossAnatomy:birnlex_1117"} [Term] id: UBERON:0002023 @@ -58376,6 +58563,7 @@ disjoint_from: UBERON:0002729 {source="NIF_GrossAnatomy"} ! claustral amygdaloid xref: SCTID:279410004 ! Entire claustrum xref: http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg xref: UMLS:C0008910 +xref: UMLS:C0008910 {source="NIF_GrossAnatomy:birnlex_1522"} [Term] id: UBERON:0002729 @@ -58390,6 +58578,7 @@ is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0001876 {source="FMA"} ! amygdala relationship: part_of UBERON:0006098 {source="NIF"} ! basal nuclear complex disjoint_from: UBERON:0002023 {source="NIF_GrossAnatomy"} ! claustrum +xref: UMLS:C0262214 {source="NIF_GrossAnatomy:birnlex_1515"} [Term] id: UBERON:0006098 @@ -58402,6 +58591,7 @@ xref: NIF_GrossAnatomy:birnlex_1629 ! Basal nuclear complex xref: EV:0100182 ! basal nuclei is_a: UBERON:0002780 ! regional part of forebrain relationship: part_of UBERON:0002743 ! basal forebrain +xref: UMLS:C0004781 {source="NIF_GrossAnatomy:birnlex_1629"} [Term] id: UBERON:0002024 @@ -58793,6 +58983,8 @@ xref: UMLS:C0038866 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000036"} ! Vertebrata xref: CALOHA:TS-0992 subset: efo_slim +xref: UMLS:C0038866 {source="NIF_GrossAnatomy:birnlex_1325"} +xref: UMLS:C1289559 {source="NIF_GrossAnatomy:birnlex_1325"} [Term] id: UBERON:0002038 @@ -58829,6 +59021,8 @@ relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001573"} ! Vertebrata xref: CALOHA:TS-0990 subset: efo_slim property_value: external_definition "Subdivision of the midbrain anterior to the midbrain tegmentum which contains darkly pigmented neurons[FMA][FMA:67947]." xsd:string {source="FMA:67947"} +xref: UMLS:C0038590 {source="NIF_GrossAnatomy:birnlex_789"} +xref: UMLS:C1269578 {source="NIF_GrossAnatomy:birnlex_789"} [Term] id: UBERON:0012193 @@ -58909,6 +59103,7 @@ xref: BM:MB-D ! nucleus of Darkschewitsch is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum relationship: spatially_disjoint_from UBERON:0002551 {source="ABA"} ! interstitial nucleus of cajal +xref: UMLS:C0262291 {source="NIF_GrossAnatomy:birnlex_896"} [Term] id: UBERON:0002045 @@ -58934,6 +59129,7 @@ synonym: "nucleus cuneatus" RELATED LATIN [Wikipedia:Cuneate_nucleus] xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png xref: SCTID:369072005 ! Entire nucleus cuneatus xref: UMLS:C0228548 +xref: UMLS:C0587939 {source="NIF_GrossAnatomy:birnlex_2640"} [Term] id: UBERON:0005305 @@ -63084,6 +63280,7 @@ is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0014649 ! white matter of medulla oblongata synonym: "tractus solitarius medullae oblongatae" RELATED LATIN [Wikipedia:Solitary_tract] xref: http://upload.wikimedia.org/wikipedia/commons/9/93/Gray695.png +xref: UMLS:C0175559 {source="NIF_GrossAnatomy:birnlex_1483"} [Term] id: UBERON:0002126 ! solitary tract nuclear complex @@ -63138,6 +63335,7 @@ xref: MESH:A08.186.211.132.810.406.750 ! solitary nucleu xref: ABA:NTS ! Nucleus of the solitary tract xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png xref: UMLS:C0175518 +xref: UMLS:C0175518 {source="NIF_GrossAnatomy:birnlex_1429"} [Term] id: UBERON:0009051 @@ -63223,6 +63421,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/7/72/CerebCircuit.png xref: VHOG:0001627 ! inferior olive property_value: homology_notes "The inferior olive appears to be present in all vertebrate classes and is particularly well developed in species with a well-developed cerebellum.[well established][VHOG]" xsd:string {external_class="VHOG:0001627", ontology="VHOG", source="ISBN:978-0471210054 Butler AB and Hodos W\, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.256", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001627"} ! Vertebrata +xref: UMLS:C0228540 {source="NIF_GrossAnatomy:birnlex_1164"} [Term] id: UBERON:0007244 ! inferior olivary nucleus @@ -63282,6 +63481,7 @@ relationship: spatially_disjoint_from UBERON:0002597 {source="ABA"} ! principal synonym: "nucleus olivaris superior" EXACT LATIN [FMA:TA, FMA:72247] synonym: "nucleus olivaris superior" RELATED LATIN [Wikipedia:Superior_olivary_complex] xref: http://upload.wikimedia.org/wikipedia/commons/4/46/Gray713.png +xref: UMLS:C0175427 {source="NIF_GrossAnatomy:birnlex_1307"} [Term] id: UBERON:0007247 ! superior olivary nucleus @@ -63368,6 +63568,7 @@ xref: NIF_GrossAnatomy:birnlex_1682 ! Medial superior olivary nucleus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray713.png/200px-Gray713.png xref: BM:Pons-SOM ! medial superior olivary nucleus is_a: UBERON:0007247 ! superior olivary nucleus +xref: UMLS:C0175430 {source="NIF_GrossAnatomy:birnlex_1682"} [Term] id: UBERON:0002779 @@ -63386,6 +63587,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray679.png/200px xref: BM:Pons-SOL ! lateral superior olivary nucleus is_a: UBERON:0007247 ! superior olivary nucleus xref: SCTID:360477003 ! Accessory olivary nucleus +xref: UMLS:C0175429 {source="NIF_GrossAnatomy:birnlex_1675"} [Term] id: UBERON:0002129 @@ -63416,6 +63618,8 @@ xref: UMLS:C0007759 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001597"} ! Vertebrata xref: CALOHA:TS-2000 property_value: external_definition "The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function[GO][GO:0021695]." xsd:string {source="GO:0021695"} +xref: UMLS:C0007759 {source="NIF_GrossAnatomy:birnlex_1566"} +xref: UMLS:C1284087 {source="NIF_GrossAnatomy:birnlex_1566"} [Term] id: UBERON:0002138 @@ -63438,6 +63642,7 @@ xref: BM:HPT ! habenulopeduncular tract is_a: UBERON:0001019 {source="NIF_GrossAnatomy"} ! fascicle relationship: part_of UBERON:0003931 {source="ZFA"} ! diencephalic white matter xref: SCTID:369194000 ! Entire habenulopeduncular tract +xref: UMLS:C0228391 {source="NIF_GrossAnatomy:birnlex_1504"} [Term] id: UBERON:0011357 ! Reissner's fiber @@ -63500,6 +63705,7 @@ xref: TAO:0000683 ! subcommissural organ synonym: "organum subcommissurale" RELATED LATIN [Wikipedia:Subcommissural_organ] xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png xref: CALOHA:TS-0986 +xref: UMLS:C0038533 {source="NIF_GrossAnatomy:birnlex_1028"} [Term] id: UBERON:0011577 @@ -63533,6 +63739,7 @@ relationship: part_of UBERON:0002275 ! reticular formation relationship: spatially_disjoint_from UBERON:0007412 {source="ABA"} ! midbrain raphe nuclei relationship: spatially_disjoint_from UBERON:0001965 {source="ABA"} ! substantia nigra pars compacta relationship: part_of UBERON:0002639 {source="NIFSTD"} ! midbrain reticular formation +xref: UMLS:C0262306 {source="NIF_GrossAnatomy:birnlex_1437"} [Term] id: UBERON:0002143 @@ -63566,6 +63773,7 @@ relationship: spatially_disjoint_from UBERON:0002682 {source="ABA"} ! abducens n relationship: spatially_disjoint_from UBERON:0003011 {source="ABA"} ! facial motor nucleus synonym: "nucleus tegmentalis posterior" EXACT LATIN [FMA:TA, FMA:72434] relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001368"} ! Vertebrata +xref: UMLS:C0175393 {source="NIF_GrossAnatomy:birnlex_992"} [Term] id: UBERON:0014568 @@ -63609,6 +63817,7 @@ relationship: spatially_disjoint_from UBERON:0002704 {source="ABA"} ! metathalam relationship: spatially_disjoint_from UBERON:0002776 {source="ABA"} ! ventral nuclear group xref: SCTID:25949000 ! Peripeduncular nucleus relationship: part_of UBERON:0001943 {source="NIFSTD"} ! midbrain tegmentum +xref: UMLS:C0152368 {source="NIF_GrossAnatomy:birnlex_1474"} [Term] id: UBERON:0002145 @@ -63628,6 +63837,7 @@ relationship: part_of UBERON:0001943 {source="NIF"} ! midbrain tegmentum relationship: spatially_disjoint_from UBERON:0002043 {source="ABA"} ! dorsal raphe nucleus xref: TAO:0000903 ! interpeduncular nucleus tegmentum synonym: "interpeduncular nucleus tegmentum" RELATED [TAO:0000903] +xref: UMLS:C0175398 {source="NIF_GrossAnatomy:birnlex_1000"} [Term] id: UBERON:0002146 @@ -63723,6 +63933,7 @@ xref: SCTID:369016004 ! Entire locus ceruleus xref: ncithesaurus:Locus_Coeruleus ! locus coeruleus xref: UMLS:C0023951 subset: efo_slim +xref: UMLS:C0023951 {source="NIF_GrossAnatomy:birnlex_905"} [Term] id: UBERON:0010125 @@ -63762,6 +63973,7 @@ xref: SCTID:369028007 ! Entire superior salivary nucleus xref: EHDAA2:0004646 ! superior salivatory nucleus relationship: immediate_transformation_of UBERON:0010125 {evidence="definitional"} ! future superior salivatory nucleus relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata +xref: UMLS:C0175447 {source="NIF_GrossAnatomy:birnlex_1131"} [Term] id: UBERON:0002153 @@ -63791,6 +64003,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png xref: VHOG:0001699 ! fastigial nucleus property_value: homology_notes "One or more deep cerebellar nuclei appear in agnathans, sharks, ropefishes, lungfishes, Latimeria, and amphibians. Reptiles have two nuclei (a medial and a lateral), and birds and mammals have three nuclei (a medial, a lateral, and an interposed nucleus). The medial nucleus of mammals is known as the fastigial nucleus, and the lateral nucleus is known as the dentate nucleus.[well established][VHOG]" xsd:string {external_class="VHOG:0001699", ontology="VHOG", source="ISBN:978-0471210054 Butler AB\, Hodos W\, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.260-261", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001699"} ! Vertebrata +xref: UMLS:C0175490 {source="NIF_GrossAnatomy:birnlex_1146"} [Term] id: UBERON:0006331 ! brainstem nucleus @@ -63842,6 +64055,8 @@ relationship: part_of UBERON:0000988 ! pons relationship: spatially_disjoint_from UBERON:0002881 {source="ABA"} ! sublingual nucleus xref: SCTID:369078009 ! Entire nucleus prepositus relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata +xref: UMLS:C0152399 {source="NIF_GrossAnatomy:birnlex_2652"} +xref: UMLS:C1289505 {source="NIF_GrossAnatomy:birnlex_2652"} [Term] id: UBERON:0002161 @@ -63867,6 +64082,7 @@ relationship: spatially_disjoint_from UBERON:0002045 {source="ABA"} ! cuneate nu xref: SCTID:369071003 ! Entire nucleus gracilis synonym: "nucleus gracilis" RELATED LATIN [Wikipedia:Gracile_nucleus] xref: http://upload.wikimedia.org/wikipedia/commons/d/df/Gray688.png +xref: UMLS:C0228546 {source="NIF_GrossAnatomy:birnlex_2643"} [Term] id: UBERON:0002162 @@ -63898,6 +64114,8 @@ relationship: spatially_disjoint_from UBERON:0002591 {source="ABA"} ! oral part xref: SCTID:369039005 ! Entire area postrema xref: http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png property_value: external_definition "An area of medulla oblongata, outside the blood-brain barrier. The apical terminals of the neurons are, in a strategic location either to monitor the chemical constitution of the plasma or to release neurogenic substances into the general circulation. Ma 1997.[TAO]" xsd:string {ontology="TAO", external_class="TAO:0005146", date_retrieved="2012-08-14", source="ZFIN:curator"} +xref: UMLS:C0228530 {source="NIF_GrossAnatomy:birnlex_2636"} +xref: UMLS:C1289468 {source="NIF_GrossAnatomy:birnlex_2636"} [Term] id: UBERON:0002164 @@ -63913,6 +64131,7 @@ xref: ZFA:0000446 ! tecto-bulbar tract is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001896 ! medulla oblongata xref: SCTID:369265000 ! Entire tectobulbar tract +xref: UMLS:C0152378 {source="NIF_GrossAnatomy:birnlex_750"} [Term] id: UBERON:0002165 @@ -65623,6 +65842,8 @@ xref: UMLS:C0032008 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000141"} ! Vertebrata xref: CALOHA:TS-0794 subset: efo_slim +xref: UMLS:C0032008 {source="NIF_GrossAnatomy:birnlex_1581"} +xref: UMLS:C1280369 {source="NIF_GrossAnatomy:birnlex_1581"} [Term] id: UBERON:0009861 ! ascidian neural complex @@ -65793,6 +66014,7 @@ xref: FMA:74870 ! Anterior median eminence xref: NIF_GrossAnatomy:birnlex_1264 ! Anterior median eminence is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002197 ! median eminence of neurohypophysis +xref: UMLS:C0175323 {source="NIF_GrossAnatomy:birnlex_1264"} [Term] id: UBERON:0002652 @@ -65801,6 +66023,7 @@ xref: FMA:74875 ! Posterior median eminence xref: NIF_GrossAnatomy:birnlex_1280 ! Posterior median eminence is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002197 ! median eminence of neurohypophysis +xref: UMLS:C0175323 {source="NIF_GrossAnatomy:birnlex_1280"} [Term] id: UBERON:0002197 @@ -65836,6 +66059,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG property_value: external_definition "Region of the neurohypophysis.[AAO]" xsd:string {ontology="AAO", external_class="AAO:0010539", date_retrieved="2012-06-20", source="AAO:BJB"} property_value: homology_notes "It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG]" xsd:string {external_class="VHOG:0001179", ontology="VHOG", source="ISBN:978-0030223693 Liem KF\, Bemis WE\, Walker WF\, Grande L\, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001179"} ! Vertebrata +xref: UMLS:C0025056 {source="NIF_GrossAnatomy:birnlex_925"} [Term] id: UBERON:0002198 @@ -65887,6 +66111,8 @@ property_value: homology_notes "It (the hypophysis) develops embryonically in al xref: UMLS:C0032009 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000142"} ! Vertebrata xref: CALOHA:TS-0815 +xref: UMLS:C0032009 {source="NIF_GrossAnatomy:birnlex_1586"} +xref: UMLS:C1280368 {source="NIF_GrossAnatomy:birnlex_1586"} [Term] id: UBERON:0003217 @@ -65920,6 +66146,7 @@ xref: SCTID:424523008 ! Entire neural lobe of neurohypophysis synonym: "pars nervosa" RELATED [MA:0000860] property_value: homology_notes "It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG]" xsd:string {external_class="VHOG:0001180", ontology="VHOG", source="ISBN:978-0030223693 Liem KF\, Bemis WE\, Walker WF\, Grande L\, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001180"} ! Vertebrata +xref: UMLS:C0447640 {source="NIF_GrossAnatomy:birnlex_941"} [Term] id: UBERON:0003077 ! paraxial mesoderm @@ -67208,6 +67435,7 @@ relationship: attaches_to UBERON:0002276 {notes="limbal zone"} ! lamina of spira xref: SCTID:368960006 ! Entire tectorial membrane xref: UMLS:C0039432 property_value: external_definition "The tectorial membrane (TM) is one of two acellular gels in the cochlea of the inner ear, the other being the basilar membrane (BM). The TM is located above the sulcus spiralis internus and the spiral organ of Corti and extends along the longitudinal length of the cochlea parallel to the BM. Radially the TM is divided into three zones, the limbal, middle and marginal zones. Of these the limbal zone is the thinnest (transversally) and overlies the auditory teeth of Huschke with its inside edge attached to the spiral limbus. The marginal zone is the thickest (transversally) and is divided from the middle zone by Hensen's Stripe. It overlies the sensory inner hair cells and electrically-motile outer hair cells of the organ of Corti and during acoustic stimulation stimulates the inner hair cells through fluid coupling, and the outer hair cells via direct connection to their tallest stereocilia[Wikipedia:Tectorial_membrane_%28cochlea%29]." xsd:string {source="Wikipedia:Tectorial_membrane_%28cochlea%29"} +xref: UMLS:C1184928 {source="NIF_GrossAnatomy:birnlex_2531"} [Term] id: UBERON:0002226 @@ -67233,6 +67461,7 @@ xref: SCTID:362574003 ! Entire basilar membrane of cochlea xref: http://upload.wikimedia.org/wikipedia/commons/thumb/0/0c/Cochlea-crosssection.png/250px-Cochlea-crosssection.png xref: http://upload.wikimedia.org/wikipedia/commons/9/9b/Organ_of_corti.svg xref: UMLS:C0004816 +xref: UMLS:C0004816 {source="NIF_GrossAnatomy:birnlex_2521"} [Term] id: UBERON:0002227 @@ -67275,6 +67504,7 @@ xref: UMLS:C0029207 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001567"} ! Vertebrata xref: CALOHA:TS-0717 subset: efo_slim +xref: UMLS:C0029207 {source="NIF_GrossAnatomy:birnlex_2526"} [Term] id: UBERON:0013731 ! basilar papilla @@ -68173,6 +68403,7 @@ xref: TAO:0000649 ! dorsal horn spinal cord xref: http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg xref: UMLS:C0228575 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001287"} ! Vertebrata +xref: UMLS:C0228564 {source="NIF_GrossAnatomy:birnlex_2667"} [Term] id: UBERON:0002257 @@ -68215,6 +68446,7 @@ xref: TAO:0000702 ! ventral horn spinal cord xref: UMLS:C0228590 property_value: external_definition "The anterior horn of the spinal cord (or anterior cornu, or anterior column, or ventral horn) is the ventral (front) grey matter section of the spinal cord. The anterior horn contains motor neurons that affect the axial muscles while the posterior horn receives information regarding touch and sensation. The anterior horn is where the cell bodies of alpha motorneurons are located[Wikipedia:Anterior_horn_of_spinal_cord]." xsd:string {source="Wikipedia:Anterior_horn_of_spinal_cord"} relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001288"} ! Vertebrata +xref: UMLS:C0228569 {source="NIF_GrossAnatomy:birnlex_2668"} [Term] id: UBERON:0005373 ! spinal cord dorsal column @@ -68258,6 +68490,7 @@ xref: FMA:258178 ! thoracic segment of dorsal funiculus of spinal cord intersection_of: UBERON:0006079 ! subdivision of spinal cord dorsal column intersection_of: part_of UBERON:0003038 ! thoracic spinal cord def: "A subdivision of spinal cord dorsal column that is part of a thoracic spinal cord." [OBOL:automatic] +xref: UMLS:C0228634 {source="NIF_GrossAnatomy:birnlex_1442"} [Term] id: UBERON:0005840 @@ -68282,6 +68515,7 @@ xref: FMA:258176 ! cervical segment of dorsal funiculus of spinal cord intersection_of: UBERON:0006079 ! subdivision of spinal cord dorsal column intersection_of: part_of UBERON:0002726 ! cervical spinal cord def: "A subdivision of spinal cord dorsal column that is part of a cervical spinal cord." [OBOL:automatic] +xref: UMLS:C0228617 {source="NIF_GrossAnatomy:birnlex_736"} [Term] id: UBERON:0005842 @@ -68333,6 +68567,7 @@ synonym: "cornu laterale medullae spinalis" RELATED LATIN [Wikipedia:Lateral_hor xref: http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray675.png relationship: in_lateral_side_of UBERON:0002315 {source="FMA-abduced-lr"} ! gray matter of spinal cord xref: UMLS:C0228582 +xref: UMLS:C0228567 {source="NIF_GrossAnatomy:birnlex_2666"} [Term] id: UBERON:0006078 ! subdivision of spinal cord lateral column @@ -68348,6 +68583,7 @@ xref: NIF_GrossAnatomy:birnlex_1439 ! Thoracic spinal cord lateral column intersection_of: UBERON:0006078 ! subdivision of spinal cord lateral column intersection_of: part_of UBERON:0003038 ! thoracic spinal cord def: "A subdivision of spinal cord lateral column that is part of a thoracic spinal cord." [OBOL:automatic] +xref: UMLS:C0228635 {source="NIF_GrossAnatomy:birnlex_1439"} [Term] id: UBERON:0005848 @@ -68364,6 +68600,7 @@ xref: NIF_GrossAnatomy:birnlex_729 ! Cervical spinal cord lateral column intersection_of: UBERON:0006078 ! subdivision of spinal cord lateral column intersection_of: part_of UBERON:0002726 ! cervical spinal cord def: "A subdivision of spinal cord lateral column that is part of a cervical spinal cord." [OBOL:automatic] +xref: UMLS:C0228618 {source="NIF_GrossAnatomy:birnlex_729"} [Term] id: UBERON:0005850 @@ -68395,6 +68632,8 @@ xref: NIF_GrossAnatomy:birnlex_1448 ! Thoracic spinal cord ventral column is_a: UBERON:0002318 ! white matter of spinal cord relationship: part_of UBERON:0005375 ! spinal cord ventral column relationship: part_of UBERON:0003038 ! thoracic spinal cord +xref: UMLS:C0228636 {source="NIF_GrossAnatomy:birnlex_1448"} +xref: UMLS:C1288556 {source="NIF_GrossAnatomy:birnlex_1448"} [Term] id: UBERON:0005853 @@ -68412,6 +68651,8 @@ xref: NIF_GrossAnatomy:birnlex_1660 ! Cervical spinal cord ventral column is_a: UBERON:0002318 ! white matter of spinal cord relationship: part_of UBERON:0005375 ! spinal cord ventral column relationship: part_of UBERON:0002726 ! cervical spinal cord +xref: UMLS:C0228619 {source="NIF_GrossAnatomy:birnlex_1660"} +xref: UMLS:C1278746 {source="NIF_GrossAnatomy:birnlex_1660"} [Term] id: UBERON:0005855 @@ -68462,6 +68703,7 @@ xref: NIF_GrossAnatomy:birnlex_1282 ! Gracile fasciculus of medulla intersection_of: UBERON:0005821 ! gracile fasciculus intersection_of: part_of UBERON:0001896 ! medulla oblongata def: "A gracile fasciculus that is part of a medulla oblongata." [OBOL:automatic] +xref: UMLS:C0228522 {source="NIF_GrossAnatomy:birnlex_1282"} [Term] id: UBERON:0005826 @@ -68501,6 +68743,7 @@ is_a: UBERON:0005838 ! fasciculus of brain intersection_of: UBERON:0005832 ! cuneate fasciculus intersection_of: part_of UBERON:0001896 ! medulla oblongata def: "A cuneate fasciculus that is part of a medulla oblongata." [OBOL:automatic] +xref: UMLS:C0228521 {source="NIF_GrossAnatomy:birnlex_1242"} [Term] id: UBERON:0005835 @@ -68779,6 +69022,7 @@ xref: SCTID:369107001 ! Entire lateral olfactory striae is_a: UBERON:0002265 ! olfactory tract xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png property_value: external_definition "Telencephalic white matter which extends between the olfactory bulb and the ipsilateral dorsal telencephalon and carries secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain[ZFA:0000229]." xsd:string {source="ZFA:0000229"} +xref: UMLS:C0152330 {source="NIF_GrossAnatomy:birnlex_1559"} [Term] id: UBERON:0001883 @@ -68815,6 +69059,7 @@ xref: VHOG:0001625 ! olfactory tubercle property_value: external_definition "Subdivision of telencephalon which is a region on the ventro-medial aspect of the telencephalon penetrated by numerous blood vessels. It is bounded by the optic tract posteriorly and the olfactory trigone anteriorly[FMA:61891, Wikipedia:Anterior_perforated_substance]." xsd:string {source="FMA:61891"} relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001625"} ! Vertebrata property_value: external_definition "a multi-sensory processing center in the olfactory cortex that plays a role in reward behaviors. The OT is a composite structure that receives direct input from the olfactory bulb and contains the morphological and histochemical characteristics of the ventral pallidum and the striatum of the forebrain (Heimer & Wilson 1975)[Wikipedia:Anterior_perforated_substance]." xsd:string {source="Wikipedia:Anterior_perforated_substance"} +xref: UMLS:C0162436 {source="NIF_GrossAnatomy:birnlex_1096"} [Term] id: UBERON:0002893 @@ -68831,6 +69076,7 @@ relationship: part_of UBERON:0002264 {source="ABA"} ! olfactory bulb relationship: spatially_disjoint_from UBERON:0004069 {source="ABA"} ! accessory olfactory bulb relationship: spatially_disjoint_from UBERON:0002266 {source="ABA"} ! anterior olfactory nucleus relationship: spatially_disjoint_from UBERON:0002590 {source="ABA"} ! prepyriform area +xref: UMLS:C0175218 {source="NIF_GrossAnatomy:birnlex_2702"} [Term] id: UBERON:0002266 @@ -68861,6 +69107,7 @@ synonym: "nucleus retrobulbaris [a8]" EXACT LATIN [FMA:TA, FMA:77628] synonym: "nucleus olfactorius anterior" RELATED LATIN [Wikipedia:Anterior_olfactory_nucleus] xref: http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG xref: UMLS:C0175225 +xref: UMLS:C0175225 {source="NIF_GrossAnatomy:birnlex_1085"} [Term] id: UBERON:0002267 @@ -69003,6 +69250,7 @@ relationship: spatially_disjoint_from UBERON:0002877 {source="ABA"} ! parasolita relationship: spatially_disjoint_from UBERON:0002673 {source="ABA"} ! vestibular nuclear complex relationship: spatially_disjoint_from UBERON:0002871 {source="ABA"} ! hypoglossal nucleus xref: SCTID:369059009 ! Entire reticular formation of medulla oblongata +xref: UMLS:C0228520 {source="NIF_GrossAnatomy:birnlex_1020"} [Term] id: UBERON:0002573 @@ -69025,6 +69273,7 @@ intersection_of: UBERON:0002275 ! reticular formation intersection_of: part_of UBERON:0000988 ! pons relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum xref: SCTID:362403007 ! Entire reticular formation of pons +xref: UMLS:C0228428 {source="NIF_GrossAnatomy:birnlex_1050"} [Term] id: UBERON:0002639 ! midbrain reticular formation @@ -69041,6 +69290,7 @@ relationship: has_part UBERON:0002142 ! pedunculopontine tegmental nucleus relationship: part_of UBERON:0001943 ! midbrain tegmentum xref: SCTID:369234009 ! Entire reticular formation of midbrain def: "A reticular formation that is part of a midbrain." [OBOL:automatic] +xref: UMLS:C0228394 {source="NIF_GrossAnatomy:birnlex_1235"} [Term] id: UBERON:0007415 @@ -69295,6 +69545,7 @@ relationship: has_developmental_contribution_from UBERON:0002342 {source="NBK531 xref: SCTID:279842002 ! Entire stria vascularis of cochlea xref: CALOHA:TS-0982 subset: efo_slim +xref: UMLS:C0229477 {source="NIF_GrossAnatomy:birnlex_2525"} [Term] id: UBERON:0007352 @@ -69350,6 +69601,7 @@ xref: UMLS:C0152279 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000643"} ! Vertebrata xref: CALOHA:TS-1230 subset: efo_slim +xref: UMLS:C0152279 {source="NIF_GrossAnatomy:birnlex_1263"} [Term] id: UBERON:0013161 @@ -69417,6 +69669,7 @@ property_value: homology_notes "The early development of most vertebrate brains xref: UMLS:C0149555 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000007"} ! Vertebrata xref: CALOHA:TS-2058 +xref: UMLS:C0149555 {source="NIF_GrossAnatomy:birnlex_714"} [Term] id: UBERON:0002287 @@ -69536,6 +69789,7 @@ property_value: homology_notes "The early development of most vertebrate brains xref: UMLS:C0007769 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000832"} ! Vertebrata subset: efo_slim +xref: UMLS:C0007769 {source="NIF_GrossAnatomy:birnlex_1261"} [Term] id: UBERON:0002721 @@ -69567,6 +69821,7 @@ is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus xref: http://upload.wikimedia.org/wikipedia/commons/4/41/Lateral_sulcus2.png xref: SCTID:369226003 ! Entire fissure of Sylvius xref: UMLS:C0228187 +xref: UMLS:C0228187 {source="NIF_GrossAnatomy:birnlex_1487"} [Term] id: UBERON:0013591 @@ -69745,6 +70000,7 @@ disjoint_from: UBERON:0000908 {source="NIF_GrossAnatomy"} ! hippocampal commissu disjoint_from: UBERON:0006115 {source="NIF_GrossAnatomy"} ! posterior column of fornix xref: NIF_GrossAnatomy:birnlex_1033 ! Precommissural fornix xref: FMA:61967 ! precommissural fornix of forebrain +xref: UMLS:C0175237 {source="NIF_GrossAnatomy:birnlex_1033"} [Term] id: UBERON:0014541 @@ -69756,6 +70012,7 @@ intersection_of: UBERON:0014538 ! subdivision of spinal cord central canal intersection_of: subdivision_of UBERON:0003038 ! thoracic spinal cord xref: NIF_GrossAnatomy:birnlex_1395 ! Thoracic spinal cord central canal xref: SCTID:71118002 ! Thoracic spinal cord central canal +xref: UMLS:C0228637 {source="NIF_GrossAnatomy:birnlex_1395"} [Term] id: UBERON:0014542 @@ -69767,6 +70024,7 @@ intersection_of: UBERON:0014538 ! subdivision of spinal cord central canal intersection_of: subdivision_of UBERON:0002726 ! cervical spinal cord xref: NIF_GrossAnatomy:birnlex_1511 ! Cervical spinal cord central canal xref: SCTID:280403009 ! Cervical spinal cord central canal +xref: UMLS:C0228620 {source="NIF_GrossAnatomy:birnlex_1511"} [Term] id: UBERON:0014543 @@ -69778,6 +70036,7 @@ intersection_of: UBERON:0014538 ! subdivision of spinal cord central canal intersection_of: subdivision_of UBERON:0002792 ! lumbar spinal cord xref: NIF_GrossAnatomy:birnlex_1604 ! Lumbar spinal cord central canal xref: SCTID:280406001 ! Lumbar spinal cord central canal +xref: UMLS:C0228644 {source="NIF_GrossAnatomy:birnlex_1604"} [Term] id: UBERON:0014547 @@ -69798,6 +70057,7 @@ synonym: "sulcus frontomarginalis" RELATED [NIF_GrossAnatomy:birnlex_4000] ! no mapping (NIF_GrossAnatomy:birnlex_1324) -- is_a: NIF_GrossAnatomy:birnlex_1324 ! Superficial feature part of frontal lobe xref: NIF_GrossAnatomy:birnlex_4000 ! Frontomarginal sulcus is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0262269 {source="NIF_GrossAnatomy:birnlex_4000"} [Term] id: UBERON:0001173 @@ -70063,6 +70323,8 @@ relationship: spatially_disjoint_from UBERON:0002956 {source="ABA"} ! granular l xref: ncithesaurus:Purkinje_Cell_Layer_of_the_Cerebellum ! Purkinje Cell Layer of the Cerebellum xref: SCTID:369046001 ! Entire purkinje cell layer of cerebellar cortex xref: UMLS:C1709776 +xref: UMLS:C0228469 {source="NIF_GrossAnatomy:birnlex_818"} +xref: UMLS:C1289475 {source="NIF_GrossAnatomy:birnlex_818"} [Term] id: UBERON:0002974 @@ -70081,6 +70343,8 @@ xref: ncithesaurus:Molecular_Layer_of_the_Cerebellum ! Molecular Layer of the Ce xref: SCTID:369045002 ! Entire molecular layer of cerebellar cortex xref: UMLS:C1709064 xref: CALOHA:TS-1248 +xref: UMLS:C0228469 {source="NIF_GrossAnatomy:birnlex_810"} +xref: UMLS:C1289474 {source="NIF_GrossAnatomy:birnlex_810"} [Term] id: UBERON:0008829 @@ -70094,6 +70358,8 @@ is_a: UBERON:0002956 {source="MA"} ! granular layer of cerebellar cortex xref: MA:0000994 ! cerebellum external granule cell layer xref: NIF_GrossAnatomy:birnlex_797 ! Outer granular layer of cerebellar cortex property_value: external_definition "The transient layer of the cerebellar cortex present during development which is composed of the dividing and migrating granule cell[MGI:tc]" xsd:string {source="MGI:tc"} +xref: UMLS:C0228473 {source="NIF_GrossAnatomy:birnlex_797"} +xref: UMLS:C1289480 {source="NIF_GrossAnatomy:birnlex_797"} [Term] id: UBERON:0008830 @@ -70103,6 +70369,8 @@ xref: MA:0000995 ! cerebellum internal granule cell layer xref: NIF_GrossAnatomy:birnlex_790 ! Inner granular layer of cerebellar cortex xref: ncithesaurus:Internal_Granular_Layer_of_the_Cerebellum ! Internal Granular Layer of the Cerebellum xref: UMLS:C1708540 +xref: UMLS:C0228471 {source="NIF_GrossAnatomy:birnlex_790"} +xref: UMLS:C1289476 {source="NIF_GrossAnatomy:birnlex_790"} [Term] id: UBERON:0002301 @@ -70350,6 +70618,7 @@ xref: SCTID:369096000 ! Entire fimbria of hippocampus synonym: "fimbria hippocampi" RELATED LATIN [Wikipedia:Fimbria_of_hippocampus] xref: http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray749.png xref: UMLS:C0152315 +xref: UMLS:C0152315 {source="NIF_GrossAnatomy:birnlex_1502"} [Term] id: UBERON:0002305 @@ -70379,6 +70648,7 @@ is_a: UBERON:0002305 {source="Wikipedia"} ! layer of hippocampus xref: SCTID:369094002 ! Entire alveus of hippocampus xref: ncithesaurus:Alveus ! Alveus xref: UMLS:C0228247 +xref: UMLS:C0228247 {source="NIF_GrossAnatomy:birnlex_1510"} [Term] id: UBERON:0005371 @@ -70637,6 +70907,7 @@ xref: SCTID:362412009 ! Entire cerebellar white matter xref: TAO:0002183 ! cerebellar white matter property_value: external_definition "CNS white matter that is part of the cerebellum.[TAO]" xsd:string {ontology="TAO", external_class="TAO:0002183", date_retrieved="2012-08-14", source="ZFIN:curator"} xref: UMLS:C0152381 +xref: UMLS:C0152381 {source="NIF_GrossAnatomy:birnlex_1562"} [Term] id: UBERON:0002319 @@ -73785,6 +74056,8 @@ property_value: homology_notes "From comparative analyses of craniate brains, a xref: UMLS:C0004388 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000396"} ! Vertebrata xref: CALOHA:TS-2001 +xref: UMLS:C0004388 {source="NIF_GrossAnatomy:birnlex_1123"} +xref: UMLS:C1305381 {source="NIF_GrossAnatomy:birnlex_1123"} [Term] id: UBERON:0002411 @@ -74067,6 +74340,7 @@ disjoint_from: UBERON:0003020 {source="NIF_GrossAnatomy"} ! subcallosal area synonym: "nucleus basalis telencephali" RELATED LATIN [Wikipedia:Nucleus_basalis_of_Meynert] xref: http://upload.wikimedia.org/wikipedia/commons/3/36/Substantia_innominata_MRI.PNG xref: SCTID:369109003 ! Entire nucleus basalis of Meynert +xref: UMLS:C0004788 {source="NIF_GrossAnatomy:birnlex_1107"} [Term] id: UBERON:0002107 @@ -74244,6 +74518,7 @@ relationship: spatially_disjoint_from UBERON:0001933 {source="ABA"} ! retrochias relationship: spatially_disjoint_from UBERON:0001906 {source="ABA"} ! subthalamic nucleus relationship: spatially_disjoint_from UBERON:0001907 {source="ABA"} ! zona incerta synonym: "area hypothalamica lateralis" EXACT LATIN [FMA:TA, FMA:62030] +xref: UMLS:C0020654 {source="NIF_GrossAnatomy:birnlex_4037"} [Term] id: UBERON:0006964 ! pars distalis of adenohypophysis @@ -74279,6 +74554,7 @@ property_value: external_definition "Region of the adenohypophysis which produce property_value: external_definition "The anterior part of the adenohypophysis. [TFD][VHOG]" xsd:string {ontology="VHOG", external_class="VHOG:0000244", date_retrieved="2012-09-17", source="http://www.thefreedictionary.com/pars+anterior", source="http://bgee.unil.ch/"} property_value: homology_notes "It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG]" xsd:string {external_class="VHOG:0000244", ontology="VHOG", source="ISBN:978-0030223693 Liem KF\, Bemis WE\, Walker WF\, Grande L\, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000244"} ! Vertebrata +xref: UMLS:C0175322 {source="NIF_GrossAnatomy:birnlex_1022"} [Term] id: UBERON:0002431 @@ -74341,6 +74617,7 @@ xref: ZFA:0000347 ! dorsal hypothalamic zone is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001898 {source="NIF_GrossAnatomy"} ! hypothalamus property_value: external_definition "Brain structure which is the dorsal most region of the hypothalamus and expands laterally and emerges caudal to the ventral zone and is separated from the median tuberal portion by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain[ZFA:0000347, ISBN:3764351209, ZFA:curator]." xsd:string {source="ZFA:0000347, ISBN:3764351209, ZFA:curator"} +xref: UMLS:C0175318 {source="NIF_GrossAnatomy:birnlex_777"} [Term] id: UBERON:0002555 @@ -74356,6 +74633,7 @@ relationship: part_of UBERON:0001898 ! hypothalamus synonym: "area hypothalamica intermedia" EXACT LATIN [FMA:TA, FMA:62028] property_value: external_definition "Brain structure that lies perpendicular to the longitudinal axis of the embryonic neural tube, is continuous with the rostral hypothalamic proliferation and whose most lateral extent is deflected dorsally within the inferior lobe.[TAO]" xsd:string {ontology="TAO", external_class="TAO:0006000", date_retrieved="2012-08-14", source="ZFIN:ZDB-PUB-001018-1", source="ZFIN:ZDB-PUB-020730-6", source="ZFIN:ZDB-PUB-081114-19"} synonym: "intermediate hypothalamus" RELATED [TAO:0006000] +xref: UMLS:C0020669 {source="NIF_GrossAnatomy:birnlex_1015"} [Term] id: UBERON:0002432 @@ -74470,6 +74748,7 @@ property_value: external_definition "A short stalk connecting the pituitary with property_value: homology_notes "It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG]" xsd:string {external_class="VHOG:0000245", ontology="VHOG", source="ISBN:978-0030223693 Liem KF\, Bemis WE\, Walker WF\, Grande L\, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.510 and Figure 15-5", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} xref: UMLS:C0751440 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000245"} ! Vertebrata +xref: UMLS:C0447641 {source="NIF_GrossAnatomy:birnlex_912"} [Term] id: UBERON:0006250 @@ -74550,6 +74829,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/7/70/Brodmann_areas_17_18_19 xref: SCTID:384772005 ! Entire Brodmann area 17, striate xref: UMLS:C0038446 is_a: UBERON:0013529 ! Brodmann area +xref: UMLS:C1272535 {source="NIF_GrossAnatomy:birnlex_1748"} [Term] id: UBERON:0011299 @@ -74594,6 +74874,8 @@ intersection_of: part_of UBERON:0001869 ! cerebral hemisphere xref: SCTID:361691006 ! Entire cerebral white matter xref: UMLS:C0152295 xref: CALOHA:TS-2362 +xref: UMLS:C0152295 {source="NIF_GrossAnatomy:birnlex_711"} +xref: UMLS:C1284115 {source="NIF_GrossAnatomy:birnlex_711"} [Term] id: UBERON:0005401 @@ -74643,6 +74925,7 @@ relationship: spatially_disjoint_from UBERON:0001966 {source="ABA"} ! substantia relationship: spatially_disjoint_from UBERON:0002691 {source="ABA"} ! ventral tegmental area xref: TAO:0000275 ! rostral tegmental nucleus synonym: "rostral tegmental nucleus" RELATED [TAO:0000275] +xref: UMLS:C0175394 {source="NIF_GrossAnatomy:birnlex_1421"} [Term] id: UBERON:0010036 @@ -74939,6 +75222,9 @@ synonym: "papillae fungiformes" RELATED LATIN [Wikipedia:Fungiform_papilla] xref: http://upload.wikimedia.org/wikipedia/commons/6/6e/Gray1014.png xref: UMLS:C0545784 property_value: external_definition "The fungiform papillae are mushroom shaped e (projections) on the tongue. They are located on the top (dorsal) surface of the tongue, scattered throughout the filiform papilla but mainly at the tip and lateral margins of the tongue. They have taste buds on their superior (upper) surface which can distinguish the five tastes: sweet, sour, bitter, salty, and umami. They have a core of connective tissue. They are innervated by the seventh cranial nerve, more specifically via the submandibular ganglion, chorda tympani, and geniculate ganglion ascending to the solitary nucleus (the sensory component of the Vagus nerve in the brainstem). [WP,unvetted][Wikipedia:Fungiform_papilla]." xsd:string {source="Wikipedia:Fungiform_papilla"} +xref: UMLS:C0226968 {source="NIF_GrossAnatomy:birnlex_4106"} +xref: UMLS:C0545784 {source="NIF_GrossAnatomy:birnlex_4106"} +xref: UMLS:C1267558 {source="NIF_GrossAnatomy:birnlex_4106"} [Term] id: UBERON:0002451 @@ -75233,6 +75519,9 @@ xref: SCTID:58743008 ! Entire filiform papillae of tongue synonym: "papillae filiformes" RELATED LATIN [Wikipedia:Filiform_papilla] xref: http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1016.png xref: UMLS:C0545782 +xref: UMLS:C0226966 {source="NIF_GrossAnatomy:birnlex_4104"} +xref: UMLS:C0545782 {source="NIF_GrossAnatomy:birnlex_4104"} +xref: UMLS:C1267556 {source="NIF_GrossAnatomy:birnlex_4104"} [Term] id: UBERON:0002468 @@ -75255,6 +75544,8 @@ synonym: "papillae foliatae" RELATED LATIN [Wikipedia:Foliate_papilla] xref: http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray1021.png xref: UMLS:C0545785 property_value: external_definition "Taste-buds, the end-organs of the gustatory sense, are scattered over the mucous membrane of the mouth and tongue at irregular intervals. They occur especially in the sides of the vallate papillae. There is a localized area at the side of the base of the tongue, the foliate papillae, in which they are especially abundant. [WP,unvetted][Wikipedia:Foliate_papilla]." xsd:string {source="Wikipedia:Foliate_papilla"} +xref: UMLS:C0226969 {source="NIF_GrossAnatomy:birnlex_4105"} +xref: UMLS:C0545785 {source="NIF_GrossAnatomy:birnlex_4105"} [Term] id: UBERON:0004648 @@ -75385,6 +75676,7 @@ synonym: "pedunculus cerebri" RELATED LATIN [Wikipedia:Cerebral_peduncle] xref: http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray689.png xref: UMLS:C0007793 subset: efo_slim +xref: UMLS:C0007793 {source="NIF_GrossAnatomy:birnlex_1202"} [Term] id: UBERON:0002474 ! cerebellar peduncular complex @@ -75404,6 +75696,7 @@ synonym: "pedunculi cerebellares" EXACT LATIN [FMA:TA, FMA:77791] xref: ncithesaurus:Cerebellar_Peduncle ! cerebellar peduncle (also: UBERON:0007416 'cerebellar peduncle') synonym: "set of cerebellar peduncles" RELATED [FMA:77791] xref: UMLS:C0228515 +xref: UMLS:C0228514 {source="NIF_GrossAnatomy:birnlex_970"} [Term] id: UBERON:0007416 ! cerebellar peduncle @@ -75436,6 +75729,7 @@ relationship: part_of UBERON:0002567 {source="FMA"} ! basal part of pons xref: SCTID:279219000 ! Entire middle cerebellar peduncle synonym: "pedunculus cerebellaris medius" RELATED LATIN [Wikipedia:Middle_cerebellar_peduncle] xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray705.png +xref: UMLS:C0152392 {source="NIF_GrossAnatomy:birnlex_1529"} [Term] id: UBERON:0002163 @@ -75458,6 +75752,7 @@ synonym: "corpus restiforme" EXACT LATIN [FMA:TA, FMA:72615] xref: SCTID:362418008 ! Entire inferior cerebellar peduncle synonym: "pedunculus cerebellaris inferior" RELATED LATIN [Wikipedia:Inferior_cerebellar_peduncle] xref: http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray677.png +xref: UMLS:C0152393 {source="NIF_GrossAnatomy:birnlex_1691"} [Term] id: UBERON:0002150 ! superior cerebellar peduncle @@ -75476,6 +75771,7 @@ is_a: UBERON:0007416 ! cerebellar peduncle xref: SCTID:279218008 ! Entire superior cerebellar peduncle synonym: "pedunculus cerebellaris superior" RELATED LATIN [Wikipedia:Superior_cerebellar_peduncle] xref: http://upload.wikimedia.org/wikipedia/commons/9/97/Gray704.png +xref: UMLS:C0152391 {source="NIF_GrossAnatomy:birnlex_1711"} [Term] id: UBERON:0007707 @@ -75522,6 +75818,7 @@ relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum relationship: part_of UBERON:0002150 ! superior cerebellar peduncle synonym: "decussatio pedunculorum cerebellarium superiorum" EXACT LATIN [FMA:TA, FMA:72455] xref: SCTID:369252009 ! Entire decussation of superior cerebellar peduncles +xref: UMLS:C0152374 {source="NIF_GrossAnatomy:birnlex_1089"} [Term] id: UBERON:0002475 @@ -75574,6 +75871,7 @@ xref: SCTID:361560008 ! Entire lateral globus pallidus xref: EHDAA2:0004462 ! globus pallidus externus xref: http://upload.wikimedia.org/wikipedia/commons/e/ee/Brain_structure.gif property_value: external_definition "The lateral globus pallidus (or external, GPe) receives a strong glutamatergic projection from the subthalamic nucleus. The two form a particular system: a coupled pacemaker. The axons of the external globus pallidum go essentially to the subthalamic nucleus. They go also to other elements of the basal ganglia system, the striatum, the substantia nigra pars reticulata, and the internal globus pallidus, where they release the neurotransmitter GABA. GPe is particular in comparison to the other elements of the set by the fact that it does not work as an output base of the basal ganglia (not sending axons to the thalamus) but as the main regulator of the basal ganglia system. It is sometimes used as a target for deep brain stimulation as a treatment for Parkinson's disease. [WP,unvetted][Wikipedia:Lateral_globus_pallidus]." xsd:string {source="Wikipedia:Lateral_globus_pallidus"} +xref: UMLS:C0262267 {source="NIF_GrossAnatomy:birnlex_1610"} [Term] id: UBERON:0000432 @@ -75641,6 +75939,7 @@ relationship: spatially_disjoint_from UBERON:0002476 {source="ABA"} ! lateral gl xref: SCTID:361562000 ! Entire medial globus pallidus xref: http://upload.wikimedia.org/wikipedia/commons/e/ee/Brain_structure.gif property_value: external_definition "The medial globus pallidus (or internal, GPi) is one of the output nuclei of the basal ganglia. The GABA-containing neurons send their axons to specific nuclei of the dorsal thalamus (VA and VL), to the centromedian complex and to the pedunculopontine complex. The efferent bundle is constituted first of the ansa and fasciculus lenticularis, then crosses the internal capsule as the Edinger's comb system then arrives at the laterosuperior corner of the subthalamic nucleus and constitutes the Forel's field H2, then H, and suddenly changes its direction to form H1 that goes to the inferior part of the thalamus. The distribution of axonal islands is widespread in the lateral region of the thalamus. The innervation of the central region is done by collaterals. [WP,unvetted][Wikipedia:Medial_globus_pallidus]." xsd:string {source="Wikipedia:Medial_globus_pallidus"} +xref: UMLS:C0262283 {source="NIF_GrossAnatomy:birnlex_1555"} [Term] id: UBERON:0002479 @@ -75659,6 +75958,7 @@ is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001926 ! lateral geniculate body relationship: spatially_disjoint_from UBERON:0001927 {source="ABA"} ! medial geniculate body relationship: part_of UBERON:0002104 {source="NIFSTD"} ! visual system +xref: UMLS:C0175292 {source="NIF_GrossAnatomy:birnlex_1595"} [Term] id: UBERON:0002480 @@ -75686,6 +75986,7 @@ is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001926 ! lateral geniculate body synonym: "nucleus pregeniculatus" EXACT LATIN [FMA:TA, FMA:62215] synonym: "nucleus ventralis corporis geniculati lateralis" EXACT LATIN [FMA:TA, FMA:62215] +xref: UMLS:C0175293 {source="NIF_GrossAnatomy:birnlex_1597"} [Term] id: UBERON:0013605 @@ -78301,6 +78602,7 @@ xref: NIF_GrossAnatomy:birnlex_1001 ! Ventral trigeminal tract is_a: UBERON:0004171 ! trigeminothalamic tract relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum synonym: "tractus trigeminothalamicus anterior" EXACT LATIN [FMA:TA, FMA:72506] +xref: UMLS:C0175460 {source="NIF_GrossAnatomy:birnlex_1001"} [Term] id: UBERON:0002715 @@ -78309,6 +78611,7 @@ xref: FMA:72625 ! Spinal trigeminal tract of medulla xref: NIF_GrossAnatomy:birnlex_1477 ! Spinal trigeminal tract of medulla is_a: UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0001896 ! medulla oblongata +xref: UMLS:C0262330 {source="NIF_GrossAnatomy:birnlex_1477"} [Term] id: UBERON:0002797 @@ -78332,6 +78635,7 @@ xref: NIF_GrossAnatomy:birnlex_1718 ! Dorsal trigeminal tract is_a: UBERON:0004171 ! trigeminothalamic tract relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum synonym: "tractus trigeminothalamicus posterior" EXACT LATIN [FMA:TA, FMA:72500] +xref: UMLS:C0175459 {source="NIF_GrossAnatomy:birnlex_1718"} [Term] id: UBERON:0002800 @@ -78340,6 +78644,7 @@ xref: FMA:72507 ! Spinal trigeminal tract of pons xref: NIF_GrossAnatomy:birnlex_1725 ! Spinal trigeminal tract of pons is_a: UBERON:0002316 ! white matter of neuraxis xref: SCTID:369027002 ! Entire spinal trigeminal tract of pons +xref: UMLS:C0228456 {source="NIF_GrossAnatomy:birnlex_1725"} [Term] id: UBERON:0002550 @@ -78349,6 +78654,7 @@ xref: FMA:62027 ! Anterior hypothalamic region xref: NIF_GrossAnatomy:birnlex_1005 ! Anterior hypothalamic region is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001898 ! hypothalamus +xref: UMLS:C0020653 {source="NIF_GrossAnatomy:birnlex_1005"} [Term] id: UBERON:0002551 @@ -78367,6 +78673,7 @@ relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum relationship: spatially_disjoint_from UBERON:0002044 {source="ABA"} ! ventral nucleus of posterior commissure synonym: "nucleus interstitialis" EXACT LATIN [FMA:TA, FMA:72432] xref: SCTID:369251002 ! Entire interstitial nucleus of Cajal +xref: UMLS:C0228418 {source="NIF_GrossAnatomy:birnlex_1008"} [Term] id: UBERON:0002552 @@ -78380,6 +78687,7 @@ xref: NIF_GrossAnatomy:birnlex_1009 ! Vestibulocerebellar tract is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0003023 ! pontine tegmentum +xref: UMLS:C0175462 {source="NIF_GrossAnatomy:birnlex_1009"} [Term] id: UBERON:0002553 @@ -78445,6 +78753,7 @@ xref: NIF_GrossAnatomy:birnlex_1016 ! Corticotectal tract xref: BM:CTT ! cortico-tectal tract is_a: UBERON:0002316 ! white matter of neuraxis synonym: "fibrae corticotectales" EXACT LATIN [FMA:TA, FMA:72419] +xref: UMLS:C0262216 {source="NIF_GrossAnatomy:birnlex_1016"} [Term] id: UBERON:0002557 @@ -78455,6 +78764,7 @@ xref: NIF_GrossAnatomy:birnlex_1018 ! Linear nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum relationship: adjacent_to UBERON:0002691 {source="PMID:21653852"} ! ventral tegmental area +xref: UMLS:C0175404 {source="NIF_GrossAnatomy:birnlex_1018"} [Term] id: UBERON:0013733 @@ -78517,6 +78827,7 @@ is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0010262 ! operculum of brain xref: SCTID:369222001 ! Entire temporal operculum is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0149551 {source="NIF_GrossAnatomy:birnlex_1025"} [Term] id: UBERON:0002947 @@ -78528,6 +78839,7 @@ is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0010262 ! operculum of brain xref: SCTID:362352005 ! Entire frontal operculum is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0149547 {source="NIF_GrossAnatomy:birnlex_751"} [Term] id: UBERON:0002911 @@ -78543,6 +78855,8 @@ is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0010262 ! operculum of brain xref: SCTID:362353000 ! Entire parietal operculum is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0228265 {source="NIF_GrossAnatomy:birnlex_4029"} +xref: UMLS:C1284612 {source="NIF_GrossAnatomy:birnlex_4029"} [Term] id: UBERON:0002562 @@ -78564,6 +78878,7 @@ synonym: "sulcus frontalis superior" RELATED LATIN [Wikipedia:Superior_frontal_s xref: http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray726_Superior_frontal_sulcus.svg xref: UMLS:C0228198 is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0228198 {source="NIF_GrossAnatomy:birnlex_1030"} [Term] id: UBERON:0002563 @@ -78579,6 +78894,7 @@ is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum relationship: part_of UBERON:0001946 ! inferior colliculus relationship: spatially_disjoint_from UBERON:0002571 {source="ABA"} ! external nucleus of inferior colliculus +xref: UMLS:C0175371 {source="NIF_GrossAnatomy:birnlex_1035"} [Term] id: UBERON:0007193 ! orbital gyrus @@ -78599,6 +78915,7 @@ xref: FMA:62418 ! Lateral orbital gyrus xref: NIF_GrossAnatomy:birnlex_1036 ! Lateral orbital gyrus is_a: UBERON:0007193 ! orbital gyrus xref: SCTID:279195001 ! Lateral orbital gyrus +xref: UMLS:C0262268 {source="NIF_GrossAnatomy:birnlex_1036"} [Term] id: UBERON:0002565 @@ -78620,6 +78937,7 @@ relationship: spatially_disjoint_from UBERON:0002996 {source="ABA"} ! nucleus of relationship: spatially_disjoint_from UBERON:0002711 {source="ABA"} ! nucleus of posterior commissure relationship: spatially_disjoint_from UBERON:0006848 {source="ABA"} ! posterior pretectal nucleus synonym: "nucleus pretectalis anterior" EXACT LATIN [FMA:TA, FMA:72405] +xref: UMLS:C0175359 {source="NIF_GrossAnatomy:birnlex_1037"} [Term] id: UBERON:0002566 @@ -78632,6 +78950,7 @@ xref: FMA:83763 ! Superior precentral sulcus xref: NIF_GrossAnatomy:birnlex_1038 ! Superior precentral sulcus is_a: UBERON:0000093 ! sulcus is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0262338 {source="NIF_GrossAnatomy:birnlex_1038"} [Term] id: UBERON:0002567 @@ -78647,6 +78966,7 @@ is_a: UBERON:0000477 ! anatomical cluster relationship: has_part UBERON:0002152 ! middle cerebellar peduncle relationship: part_of UBERON:0000988 ! pons synonym: "pars basilaris pontis" EXACT LATIN [FMA:TA, FMA:72244] +xref: UMLS:C0228427 {source="NIF_GrossAnatomy:birnlex_1043"} [Term] id: UBERON:0002568 @@ -78656,6 +78976,7 @@ xref: FMA:72546 ! Amiculum of dentate nucleus xref: NIF_GrossAnatomy:birnlex_1044 ! Amiculum of dentate nucleus is_a: UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0002132 ! dentate nucleus +xref: UMLS:C0175487 {source="NIF_GrossAnatomy:birnlex_1044"} [Term] id: UBERON:0002569 @@ -78664,6 +78985,7 @@ xref: FMA:83782 ! Transverse temporal sulcus xref: NIF_GrossAnatomy:birnlex_1045 ! Transverse temporal sulcus is_a: UBERON:0000093 ! sulcus is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0228239 {source="NIF_GrossAnatomy:birnlex_1045"} [Term] id: UBERON:0002570 @@ -78672,6 +78994,7 @@ xref: FMA:62419 ! Medial orbital gyrus xref: NIF_GrossAnatomy:birnlex_1046 ! Medial orbital gyrus is_a: UBERON:0007193 ! orbital gyrus xref: SCTID:279194002 ! Medial orbital gyrus +xref: UMLS:C0175179 {source="NIF_GrossAnatomy:birnlex_1046"} [Term] id: UBERON:0002571 @@ -78684,6 +79007,7 @@ is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum relationship: part_of UBERON:0001946 ! inferior colliculus relationship: spatially_disjoint_from UBERON:0002563 {source="ABA"} ! central nucleus of inferior colliculus +xref: UMLS:C0175370 {source="NIF_GrossAnatomy:birnlex_1047"} [Term] id: UBERON:0002572 @@ -78693,6 +79017,7 @@ xref: NIF_GrossAnatomy:birnlex_1048 ! Principal pretectal nucleus is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum relationship: part_of UBERON:0001944 ! pretectal region +xref: UMLS:C0175355 {source="NIF_GrossAnatomy:birnlex_1048"} [Term] id: UBERON:0002574 @@ -78714,6 +79039,7 @@ xref: FMA:80184 ! Posterior orbital gyrus xref: NIF_GrossAnatomy:birnlex_1054 ! Posterior orbital gyrus is_a: UBERON:0007193 ! orbital gyrus xref: SCTID:279197009 ! Posterior orbital gyrus +xref: UMLS:C0458323 {source="NIF_GrossAnatomy:birnlex_1054"} [Term] id: UBERON:0009899 ! pole of cerebral hemisphere @@ -78736,6 +79062,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Human_brain_later intersection_of: UBERON:0009899 ! pole of cerebral hemisphere intersection_of: part_of UBERON:0001870 ! frontal cortex xref: SCTID:314144002 ! Entire frontal pole +xref: UMLS:C0149546 {source="NIF_GrossAnatomy:birnlex_1716"} [Term] id: UBERON:0002902 @@ -78753,6 +79080,7 @@ intersection_of: UBERON:0009899 ! pole of cerebral hemisphere intersection_of: part_of UBERON:0002021 ! occipital lobe relationship: part_of UBERON:0002021 {source="BTO"} ! occipital lobe xref: SCTID:314160003 ! Entire occipital pole +xref: UMLS:C0228217 {source="NIF_GrossAnatomy:birnlex_4016"} [Term] id: UBERON:0002576 @@ -78778,6 +79106,7 @@ xref: BM:MB-Tec-ICP ! pericentral nucleus of inferior colliculus is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum relationship: part_of UBERON:0001946 ! inferior colliculus +xref: UMLS:C0175369 {source="NIF_GrossAnatomy:birnlex_1056"} [Term] id: UBERON:0002578 @@ -78822,6 +79151,7 @@ xref: SCTID:279167001 ! Entire postcentral gyrus xref: http://upload.wikimedia.org/wikipedia/commons/6/66/Postcentral_gyrus.png xref: UMLS:C0152302 subset: efo_slim +xref: UMLS:C0152302 {source="NIF_GrossAnatomy:birnlex_1070"} [Term] id: UBERON:0002582 @@ -78831,6 +79161,7 @@ synonym: "sulcus calcarinus anterior" EXACT [NIF_GrossAnatomy:birnlex_1072] xref: FMA:83750 ! Anterior calcarine sulcus xref: NIF_GrossAnatomy:birnlex_1072 ! Anterior calcarine sulcus is_a: UBERON:0000093 ! sulcus +xref: UMLS:C0262187 {source="NIF_GrossAnatomy:birnlex_1072"} [Term] id: UBERON:0002584 @@ -78854,6 +79185,7 @@ is_a: UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: part_of UBERON:0009643 ! central tegmental tract xref: SCTID:369243000 ! Entire central tegmental tract of midbrain +xref: UMLS:C0152364 {source="NIF_GrossAnatomy:birnlex_1081"} [Term] id: UBERON:0002586 @@ -78870,6 +79202,7 @@ xref: BM:Tel-Cx-CAS ! calcarine sulcus is_a: UBERON:0000093 ! sulcus xref: SCTID:279355005 ! Calcarine sulcus xref: UMLS:C0228224 +xref: UMLS:C0228224 {source="NIF_GrossAnatomy:birnlex_1086"} [Term] id: UBERON:0002587 @@ -78886,6 +79219,7 @@ relationship: spatially_disjoint_from UBERON:0003004 {source="ABA"} ! median rap relationship: spatially_disjoint_from UBERON:0002148 {source="ABA"} ! locus ceruleus relationship: spatially_disjoint_from UBERON:0002267 {source="ABA"} ! laterodorsal tegmental nucleus relationship: spatially_disjoint_from UBERON:0002047 {source="ABA"} ! pontine raphe nucleus +xref: UMLS:C0175441 {source="NIF_GrossAnatomy:birnlex_1088"} [Term] id: UBERON:0002589 @@ -78902,6 +79236,7 @@ xref: SCTID:369091005 ! Entire lateral corticospinal tract synonym: "tractus corticospinalis lateralis" RELATED LATIN [Wikipedia:Lateral_corticospinal_tract] synonym: "fasciculus cerebrospinalis lateralis" RELATED LATIN [Wikipedia:Lateral_corticospinal_tract] xref: http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg +xref: UMLS:C0152402 {source="NIF_GrossAnatomy:birnlex_1095"} [Term] id: UBERON:0002591 @@ -78918,6 +79253,7 @@ relationship: spatially_disjoint_from UBERON:0007633 {source="ABA"} ! nucleus of relationship: spatially_disjoint_from UBERON:0002126 {source="ABA"} ! solitary tract nuclear complex relationship: spatially_disjoint_from UBERON:0002866 {source="ABA"} ! caudal part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0002873 {source="ABA"} ! interpolar part of spinal trigeminal nucleus +xref: UMLS:C0175417 {source="NIF_GrossAnatomy:birnlex_1100"} [Term] id: UBERON:0002592 @@ -78931,6 +79267,7 @@ is_a: UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0001896 ! medulla oblongata xref: SCTID:110687007 ! Juxtarestiform body xref: http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray677.png +xref: UMLS:C0152394 {source="NIF_GrossAnatomy:birnlex_1101"} [Term] id: UBERON:0002593 @@ -78940,6 +79277,7 @@ xref: NIF_GrossAnatomy:birnlex_1102 ! Orbital operculum is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0010262 ! operculum of brain is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0694580 {source="NIF_GrossAnatomy:birnlex_1102"} [Term] id: UBERON:0002594 @@ -78953,6 +79291,7 @@ xref: NIF_GrossAnatomy:birnlex_1104 ! Dentatothalamic tract is_a: UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0001943 ! midbrain tegmentum synonym: "tractus dentatothalamicus" RELATED LATIN [Wikipedia:Dentatothalamic_tract] +xref: UMLS:C0175411 {source="NIF_GrossAnatomy:birnlex_1104"} [Term] id: UBERON:0002595 @@ -78971,6 +79310,7 @@ is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus xref: SCTID:314143008 ! Entire orbital sulci xref: UMLS:C0228206 is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0228206 {source="NIF_GrossAnatomy:birnlex_1112"} [Term] id: UBERON:0013590 @@ -79001,6 +79341,7 @@ is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain relationship: part_of UBERON:0002776 {source="FMA"} ! ventral nuclear group xref: SCTID:279147005 ! Entire ventral posterior nucleus of thalamus xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png +xref: UMLS:C0175276 {source="NIF_GrossAnatomy:birnlex_1116"} [Term] id: UBERON:0002151 @@ -79036,6 +79377,7 @@ relationship: spatially_disjoint_from UBERON:0003011 {source="ABA"} ! facial mot xref: SCTID:304942009 ! Entire pontine nucleus synonym: "nuclei pontis" RELATED LATIN [Wikipedia:Pontine_nuclei] xref: http://upload.wikimedia.org/wikipedia/commons/d/dc/Lower_pons_horizontal_KB.svg +xref: UMLS:C0228448 {source="NIF_GrossAnatomy:birnlex_1516"} [Term] id: UBERON:0007641 ! trigeminal nuclear complex @@ -79053,6 +79395,7 @@ relationship: continuous_with UBERON:0001645 ! trigeminal nerve synonym: "nuclei trigemini" RELATED LATIN [Wikipedia:Trigeminal_nerve_nuclei] xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png xref: CALOHA:TS-2077 +xref: UMLS:C0040999 {source="NIF_GrossAnatomy:birnlex_4096"} [Term] id: UBERON:0002925 ! trigeminal nucleus @@ -79144,6 +79487,7 @@ xref: ncithesaurus:Principal_Sensory_Nucleus_of_the_Trigeminal_Nerve ! Principal xref: SCTID:369031008 ! Entire trigeminal nerve superior sensory nucleus xref: EHDAA2:0004628 ! trigeminal pontine sensory nucleus xref: UMLS:C0228701 +xref: UMLS:C0228701 {source="NIF_GrossAnatomy:birnlex_1120"} [Term] id: UBERON:0001717 @@ -79205,6 +79549,7 @@ xref: SCTID:369032001 ! Entire trigeminal nerve mesencephalic nucleus synonym: "nucleus mesencephalicus nervi trigemini" RELATED LATIN [Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve] xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001354"} ! Vertebrata +xref: UMLS:C0228702 {source="NIF_GrossAnatomy:birnlex_1010"} [Term] id: UBERON:0002666 @@ -79216,6 +79561,7 @@ xref: NIF_GrossAnatomy:birnlex_1318 ! Mesencephalic tract of trigeminal nerve is_a: UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0001943 ! midbrain tegmentum xref: SCTID:369263007 ! Entire trigeminal nerve mesencephalic tract +xref: UMLS:C0228703 {source="NIF_GrossAnatomy:birnlex_1318"} [Term] id: UBERON:0002633 @@ -79264,6 +79610,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png synonym: "trigeminal motor nuclei" EXACT PLURAL [TAO:0001365] xref: UMLS:C0228700 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001355"} ! Vertebrata +xref: UMLS:C0228700 {source="NIF_GrossAnatomy:birnlex_1222"} [Term] id: UBERON:0002598 @@ -79274,6 +79621,7 @@ xref: NIF_GrossAnatomy:birnlex_1121 ! Paracentral sulcus is_a: UBERON:0000093 ! sulcus xref: SCTID:369228002 ! Entire paracentral sulcus is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0228204 {source="NIF_GrossAnatomy:birnlex_1121"} [Term] id: UBERON:0002599 @@ -79282,6 +79630,7 @@ xref: FMA:74509 ! Medial olfactory gyrus xref: NIF_GrossAnatomy:birnlex_1127 ! Medial olfactory gyrus is_a: UBERON:0000200 ! gyrus xref: SCTID:369103002 ! Entire medial olfactory gyrus +xref: UMLS:C0152331 {source="NIF_GrossAnatomy:birnlex_1127"} [Term] id: UBERON:0002600 @@ -79300,6 +79649,7 @@ xref: SCTID:279215006 ! Limbic lobe synonym: "lobus limbicus" RELATED LATIN [Wikipedia:Limbic_lobe] xref: http://upload.wikimedia.org/wikipedia/commons/7/7e/Human_brain_inferior-medial_view_description.JPG xref: CALOHA:TS-2061 +xref: UMLS:C0458337 {source="NIF_GrossAnatomy:birnlex_1128"} [Term] id: UBERON:0002601 @@ -79317,6 +79667,7 @@ is_a: UBERON:0000200 ! gyrus relationship: spatially_disjoint_from UBERON:0001954 {source="ABA"} ! Ammon's horn relationship: spatially_disjoint_from UBERON:0001885 {source="ABA"} ! dentate gyrus of hippocampal formation xref: SCTID:279210001 ! Entire fasciolar gyrus +xref: UMLS:C0152332 {source="NIF_GrossAnatomy:birnlex_1129"} [Term] id: UBERON:0002602 @@ -79334,6 +79685,7 @@ relationship: part_of UBERON:0002130 ! cerebellar nuclear complex synonym: "nucleus interpositus anterior" EXACT LATIN [FMA:TA, FMA:72538] synonym: "nucleus emboliformis" RELATED LATIN [Wikipedia:Emboliform_nucleus] xref: http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png +xref: UMLS:C0175488 {source="NIF_GrossAnatomy:birnlex_1135"} [Term] id: UBERON:0002603 @@ -79350,6 +79702,7 @@ is_a: UBERON:0002665 ! supracallosal gyrus synonym: "gyrus paraterminalis" RELATED LATIN [Wikipedia:Paraterminal_gyrus] synonym: "gyrus subcallosus" RELATED LATIN [Wikipedia:Paraterminal_gyrus] xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png +xref: UMLS:C0175231 {source="NIF_GrossAnatomy:birnlex_1138"} [Term] id: UBERON:0002605 @@ -79359,6 +79712,7 @@ xref: NIF_GrossAnatomy:birnlex_1141 ! Precentral operculum is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0010262 ! operculum of brain is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0694581 {source="NIF_GrossAnatomy:birnlex_1141"} [Term] id: UBERON:0002606 ! neuropil @@ -79429,6 +79783,7 @@ xref: FMA:83766 ! Superior rostral sulcus xref: NIF_GrossAnatomy:birnlex_1143 ! Superior rostral sulcus is_a: UBERON:0000093 ! sulcus is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0694583 {source="NIF_GrossAnatomy:birnlex_1143"} [Term] id: UBERON:0002608 @@ -79443,6 +79798,7 @@ xref: FMA:62194 ! Caudal part of ventral lateral nucleus xref: NIF_GrossAnatomy:birnlex_1144 ! Caudal part of ventral lateral nucleus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0001925 ! ventral lateral nucleus +xref: UMLS:C0175281 {source="NIF_GrossAnatomy:birnlex_1144"} [Term] id: UBERON:0002610 @@ -79470,6 +79826,7 @@ relationship: spatially_disjoint_from UBERON:0002591 {source="ABA"} ! oral part synonym: "nuclei cochleares" RELATED LATIN [Wikipedia:Cochlear_nuclei] xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png xref: UMLS:C0152411 +xref: UMLS:C0152411 {source="NIF_GrossAnatomy:birnlex_1151"} [Term] id: UBERON:0002611 @@ -79495,6 +79852,7 @@ xref: FMA:83771 ! Transverse orbital sulcus xref: NIF_GrossAnatomy:birnlex_1155 ! Transverse orbital sulcus is_a: UBERON:0000093 ! sulcus is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0262349 {source="NIF_GrossAnatomy:birnlex_1155"} [Term] id: UBERON:0002613 @@ -79512,6 +79870,7 @@ synonym: "nucleus interpositus posterior" EXACT LATIN [FMA:TA, FMA:72536] synonym: "nucleus globosus" RELATED LATIN [Wikipedia:Globose_nucleus] xref: http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png property_value: external_definition "The globose nucleus is one of the deep cerebellar nuclei. It is located medial to the emboliform nucleus and lateral to the fastigial nucleus. This nucleus contains primarily large and small multipolar neurons. The globose nucleus and emboliform nucleus are occasionally referred to collectively as the interposed nucleus. [WP,unvetted][Wikipedia:Globose_nucleus]." xsd:string {source="Wikipedia:Globose_nucleus"} +xref: UMLS:C0175489 {source="NIF_GrossAnatomy:birnlex_1158"} [Term] id: UBERON:0002614 @@ -79527,6 +79886,7 @@ xref: ABA:VM ! Ventral medial nucleus of the thalamus xref: BM:Die-Th-VM ! ventral medial nucleus of thalamus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0001925 ! ventral lateral nucleus +xref: UMLS:C0175282 {source="NIF_GrossAnatomy:birnlex_1159"} [Term] id: UBERON:0002615 @@ -79540,6 +79900,7 @@ is_a: UBERON:0007418 ! decussation of neuraxis relationship: part_of UBERON:0001943 ! midbrain tegmentum synonym: "decussatio tegmentalis anterior" EXACT LATIN [FMA:TA, FMA:72452] xref: SCTID:369249001 ! Entire ventral tegmental decussation +xref: UMLS:C0152371 {source="NIF_GrossAnatomy:birnlex_1163"} [Term] id: UBERON:0002616 @@ -79573,6 +79934,7 @@ xref: FMA:62196 ! Pars postrema of ventral lateral nucleus xref: NIF_GrossAnatomy:birnlex_1170 ! Pars postrema of ventral lateral nucleus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0001925 ! ventral lateral nucleus +xref: UMLS:C0262304 {source="NIF_GrossAnatomy:birnlex_1170"} [Term] id: UBERON:0002618 @@ -79586,6 +79948,7 @@ xref: FMA:71116 ! Trochlear nerve tract xref: NIF_GrossAnatomy:birnlex_1172 ! Trochlear nerve fibers xref: NIF_GrossAnatomy:birnlex_1341 ! Trochlear nerve root is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve +xref: UMLS:C0175374 {source="NIF_GrossAnatomy:birnlex_1172"} [Term] id: UBERON:0002619 @@ -79622,6 +79985,8 @@ is_a: UBERON:0000477 ! anatomical cluster xref: SCTID:362381006 ! Entire tuber cinereum xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray724.png xref: UMLS:C0041283 +xref: UMLS:C0041283 {source="NIF_GrossAnatomy:birnlex_1189"} +xref: UMLS:C1284640 {source="NIF_GrossAnatomy:birnlex_1189"} [Term] id: UBERON:0002621 @@ -79647,6 +80012,7 @@ is_a: UBERON:0000064 ! organ part xref: ncithesaurus:Orbital_Part_of_the_Inferior_Frontal_Gyrus ! Orbital Part of the Inferior Frontal Gyrus xref: UMLS:C0262300 is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0262300 {source="NIF_GrossAnatomy:birnlex_1207"} [Term] id: UBERON:0002626 @@ -79659,6 +80025,7 @@ xref: EMAPA:18547 ! head of caudate nucleus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0001873 ! caudate nucleus xref: SCTID:279298007 ! Entire head of caudate nucleus +xref: UMLS:C0152336 {source="NIF_GrossAnatomy:birnlex_1212"} [Term] id: UBERON:0002627 @@ -79690,6 +80057,7 @@ xref: NIF_GrossAnatomy:birnlex_1216 ! Triangular part of inferior frontal gyrus is_a: UBERON:0000064 ! organ part xref: ncithesaurus:Triangular_Part_of_the_Inferior_Frontal_Gyrus ! Triangular Part of the Inferior Frontal Gyrus xref: UMLS:C0262350 +xref: UMLS:C0262350 {source="NIF_GrossAnatomy:birnlex_1216"} [Term] id: UBERON:0002630 @@ -79701,6 +80069,7 @@ xref: NIF_GrossAnatomy:birnlex_1217 ! Body of caudate nucleus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0001873 ! caudate nucleus xref: SCTID:314175006 ! Entire body of caudate nucleus +xref: UMLS:C0152338 {source="NIF_GrossAnatomy:birnlex_1217"} [Term] id: UBERON:0002631 @@ -79725,6 +80094,7 @@ xref: ncithesaurus:Crus_Cerebri ! Crus Cerebri synonym: "crus cerebri" RELATED LATIN [Wikipedia:Cerebral_crus] xref: http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png relationship: in_lateral_side_of UBERON:0001891 {source="FMA-abduced-lr"} ! midbrain +xref: UMLS:C0175414 {source="NIF_GrossAnatomy:birnlex_1218"} [Term] id: UBERON:0002632 @@ -79738,6 +80108,7 @@ xref: NIF_GrossAnatomy:birnlex_1220 ! Medial part of medial mammillary nucleus xref: ABA:Mmme ! Medial mammillary nucleus, median part is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0001939 {source="NIFSTD"} ! medial mammillary nucleus +xref: UMLS:C0694605 {source="NIF_GrossAnatomy:birnlex_1220"} [Term] id: UBERON:0002634 @@ -79769,6 +80140,7 @@ synonym: "area hypothalamica rostralis" EXACT LATIN [FMA:TA, FMA:62319] xref: SCTID:369133009 ! Entire anterior hypothalamic nucleus synonym: "nucleus anterior hypothalami" RELATED LATIN [Wikipedia:Anterior_hypothalamic_nucleus] xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG +xref: UMLS:C0020653 {source="NIF_GrossAnatomy:birnlex_1226"} [Term] id: UBERON:0002636 @@ -79783,6 +80155,7 @@ xref: NIF_GrossAnatomy:birnlex_1228 ! Lateral pulvinar nucleus xref: BM:Die-Th-Pl-Pll ! lateral nucleus of pulvinar is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002981 ! pulvinar nucleus +xref: UMLS:C0228345 {source="NIF_GrossAnatomy:birnlex_1228"} [Term] id: UBERON:0002637 @@ -79811,6 +80184,7 @@ xref: ncithesaurus:Ventroanterior_Nucleus_of_the_Thalamus ! Ventroanterior Nucle synonym: "nucleus ventralis anterior thalami" RELATED LATIN [Wikipedia:Ventral_anterior_nucleus] xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png xref: UMLS:C0175276 +xref: UMLS:C0175276 {source="NIF_GrossAnatomy:birnlex_1232"} [Term] id: UBERON:0002638 @@ -79823,6 +80197,7 @@ xref: NIF_GrossAnatomy:birnlex_1233 ! Medial pulvinar nucleus xref: BM:Die-Th-Pl-Plm ! medial nucleus of pulvinar is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002981 ! pulvinar nucleus +xref: UMLS:C0228344 {source="NIF_GrossAnatomy:birnlex_1233"} [Term] id: UBERON:0002641 @@ -79839,6 +80214,7 @@ xref: BM:Die-Th-Pl-Pla ! anterior nucleus of pulvinar is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002981 ! pulvinar nucleus synonym: "nucleus pulvinaris anterior" EXACT LATIN [FMA:TA, FMA:62180] +xref: UMLS:C0262299 {source="NIF_GrossAnatomy:birnlex_1239"} [Term] id: UBERON:0007418 ! decussation of neuraxis @@ -79867,6 +80243,7 @@ is_a: UBERON:0007418 ! decussation of neuraxis relationship: part_of UBERON:0001896 ! medulla oblongata synonym: "decussatio lemnisci medialis" RELATED LATIN [Wikipedia:Sensory_decussation] xref: http://upload.wikimedia.org/wikipedia/commons/6/66/Gray759.png +xref: UMLS:C0175544 {source="NIF_GrossAnatomy:birnlex_1245"} [Term] id: UBERON:0002644 @@ -79884,6 +80261,7 @@ xref: FMA:62163 ! Densocellular part of medial dorsal nucleus xref: NIF_GrossAnatomy:birnlex_1255 ! Densocellular part of medial dorsal nucleus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0002739 {source="NIFSTD"} ! medial dorsal nucleus +xref: UMLS:C0262218 {source="NIF_GrossAnatomy:birnlex_1255"} [Term] id: UBERON:0002646 @@ -79902,6 +80280,7 @@ is_a: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: part_of UBERON:0001896 ! medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata +xref: UMLS:C0228537 {source="NIF_GrossAnatomy:birnlex_1257"} [Term] id: UBERON:0002649 @@ -79923,6 +80302,7 @@ relationship: part_of UBERON:0001896 ! medulla oblongata synonym: "tractus posterolateralis" EXACT LATIN [FMA:TA, FMA:72616] xref: SCTID:369287009 ! Entire dorsolateral tract xref: UMLS:C0228587 +xref: UMLS:C0228587 {source="NIF_GrossAnatomy:birnlex_1267"} [Term] id: UBERON:0002650 @@ -79941,6 +80321,7 @@ xref: FMA:62160 ! Paralaminar part of medial dorsal nucleus xref: NIF_GrossAnatomy:birnlex_1276 ! Paralaminar part of medial dorsal nucleus is_a: UBERON:0002020 ! gray matter of neuraxis synonym: "pars paralaminaris nuclei mediodorsalis thalami" EXACT LATIN [FMA:TA, FMA:62160] +xref: UMLS:C0228332 {source="NIF_GrossAnatomy:birnlex_1276"} [Term] id: UBERON:0002651 @@ -79961,6 +80342,7 @@ xref: SCTID:279247001 ! Entire anterior horn of lateral ventricle synonym: "cornu anterius" RELATED LATIN [Wikipedia:Anterior_horn_of_lateral_ventricle] xref: http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray735.png xref: UMLS:C0152281 +xref: UMLS:C1281033 {source="NIF_GrossAnatomy:birnlex_1279"} [Term] id: UBERON:0002654 @@ -79981,6 +80363,7 @@ is_a: UBERON:0002020 ! gray matter of neuraxis synonym: "pars parvocellularis lateralis nuclei mediodorsalis thalami" EXACT LATIN [FMA:TA, FMA:62162] synonym: "pars principalis nuclei ventralis anterior thalami" EXACT LATIN [FMA:TA, FMA:62162] relationship: part_of UBERON:0002739 {source="NIFSTD"} ! medial dorsal nucleus +xref: UMLS:C0228330 {source="NIF_GrossAnatomy:birnlex_1283"} [Term] id: UBERON:0002655 @@ -80002,6 +80385,7 @@ synonym: "pars centralis ventriculi lateralis" RELATED LATIN [Wikipedia:Body_of_ xref: http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray735.png xref: UMLS:C0152280 property_value: external_definition "The body of lateral ventricle (cella) extends from the interventricular foramen to the splenium of the corpus callosum. It is an irregularly curved cavity, triangular on transverse section, with a roof, a floor, and a medial wall. The roof is formed by the under surface of the corpus callosum; the floor by the following parts, enumerated in their order of position, from before backward: the caudate nucleus of the corpus striatum, the stria terminalis and the terminal vein, the lateral portion of the upper surface of the thalamus, the choroid plexus, and the lateral part of the fornix; the medial wall is the posterior part of the septum pellucidum, which separates it from the opposite ventricle. [WP,unvetted][Wikipedia:Body_of_lateral_ventricle]." xsd:string {source="Wikipedia:Body_of_lateral_ventricle"} +xref: UMLS:C0152280 {source="NIF_GrossAnatomy:birnlex_1287"} [Term] id: UBERON:0002656 @@ -80023,6 +80407,7 @@ xref: NIF_GrossAnatomy:birnlex_1291 ! Periamygdaloid area xref: BM:Tel-Cx-PAM ! periamygdaloid area is_a: UBERON:0011300 {source="FMA"} ! gray matter of telencephalon relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus +xref: UMLS:C0458328 {source="NIF_GrossAnatomy:birnlex_1291"} [Term] id: UBERON:0014537 @@ -80046,6 +80431,7 @@ xref: FMA:67966 ! Posterior parahippocampal gyrus xref: NIF_GrossAnatomy:birnlex_1295 ! Posterior parahippocampal gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus +xref: UMLS:C0694597 {source="NIF_GrossAnatomy:birnlex_1295"} [Term] id: UBERON:0002658 @@ -80058,6 +80444,7 @@ is_a: UBERON:0003002 ! medial lemniscus intersection_of: UBERON:0003002 ! medial lemniscus intersection_of: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum +xref: UMLS:C0175406 {source="NIF_GrossAnatomy:birnlex_1296"} [Term] id: UBERON:0002659 @@ -80073,6 +80460,7 @@ is_a: UBERON:0003035 ! regional part of cerebellar white matter xref: SCTID:369269006 ! Entire superior medullary velum synonym: "velum medullare superius" RELATED LATIN [Wikipedia:Superior_medullary_velum] xref: http://upload.wikimedia.org/wikipedia/commons/9/9b/Gray701.png +xref: UMLS:C0152284 {source="NIF_GrossAnatomy:birnlex_1300"} [Term] id: UBERON:0002660 @@ -80085,6 +80473,7 @@ is_a: UBERON:0002309 ! medial longitudinal fasciculus intersection_of: UBERON:0002309 ! medial longitudinal fasciculus intersection_of: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum +xref: UMLS:C0262284 {source="NIF_GrossAnatomy:birnlex_1302"} [Term] id: UBERON:0002661 @@ -80107,6 +80496,7 @@ synonym: "gyrus frontalis superior" RELATED LATIN [Wikipedia:Superior_frontal_gy xref: http://upload.wikimedia.org/wikipedia/commons/5/50/Superior_frontal_gyrus.png xref: UMLS:C0152296 subset: efo_slim +xref: UMLS:C0152296 {source="NIF_GrossAnatomy:birnlex_1303"} [Term] id: UBERON:0002662 @@ -80116,6 +80506,7 @@ xref: FMA:72460 ! Medial pes lemniscus xref: NIF_GrossAnatomy:birnlex_1310 ! Medial pes lemniscus is_a: UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0001943 ! midbrain tegmentum +xref: UMLS:C0175410 {source="NIF_GrossAnatomy:birnlex_1310"} [Term] id: UBERON:0002664 @@ -80129,6 +80520,7 @@ xref: FMA:62346 ! Lateral part of medial mammillary nucleus xref: NIF_GrossAnatomy:birnlex_1314 ! Lateral part of medial mammillary nucleus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0001939 {source="NIFSTD"} ! medial mammillary nucleus +xref: UMLS:C0694606 {source="NIF_GrossAnatomy:birnlex_1314"} [Term] id: UBERON:0002665 @@ -80144,6 +80536,7 @@ xref: BTO:0003738 ! tenia tecta is_a: UBERON:0000200 ! gyrus xref: SCTID:369231001 ! Entire supracallosal gyrus is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0152333 {source="NIF_GrossAnatomy:birnlex_1316"} [Term] id: UBERON:0002669 @@ -80158,6 +80551,7 @@ xref: FMA:83760 ! Anterior horizontal limb of lateral sulcus xref: NIF_GrossAnatomy:birnlex_1327 ! Anterior horizontal limb of lateral sulcus is_a: UBERON:0000464 ! anatomical space synonym: "ramus anterior sulci lateralis cerebri" EXACT LATIN [FMA:TA, FMA:83760] +xref: UMLS:C0262190 {source="NIF_GrossAnatomy:birnlex_1327"} [Term] id: UBERON:0002670 @@ -80173,6 +80567,7 @@ xref: FMA:83759 ! Anterior ascending limb of lateral sulcus xref: NIF_GrossAnatomy:birnlex_1330 ! Anterior ascending limb of lateral sulcus is_a: UBERON:0000464 ! anatomical space synonym: "ramus ascendens sulci lateralis cerebri" EXACT LATIN [FMA:TA, FMA:83759] +xref: UMLS:C0262186 {source="NIF_GrossAnatomy:birnlex_1330"} [Term] id: UBERON:0002671 @@ -80182,6 +80577,7 @@ xref: FMA:72458 ! Pallidotegmental fasciculus xref: NIF_GrossAnatomy:birnlex_1331 ! Pallidotegmental fasciculus is_a: UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0001943 ! midbrain tegmentum +xref: UMLS:C0175407 {source="NIF_GrossAnatomy:birnlex_1331"} [Term] id: UBERON:0002672 @@ -80197,6 +80593,7 @@ xref: FMA:83758 ! Diagonal sulcus xref: NIF_GrossAnatomy:birnlex_1344 ! Diagonal sulcus is_a: UBERON:0000093 ! sulcus is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0694582 {source="NIF_GrossAnatomy:birnlex_1344"} [Term] id: UBERON:0002676 @@ -80222,6 +80619,7 @@ synonym: "commissura supraoptica ventralis" EXACT LATIN [FMA:TA, FMA:62052] synonym: "commissura supraoptica ventralis" RELATED LATIN [Wikipedia:Ventral_supraoptic_decussation] xref: http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png synonym: "ventral supraoptic decussation of gudden" RELATED [FMA:62052] +xref: UMLS:C0175339 {source="NIF_GrossAnatomy:birnlex_1347"} [Term] id: UBERON:0002677 @@ -80274,6 +80672,7 @@ relationship: spatially_disjoint_from UBERON:0002681 {source="ABA"} ! anteromedi relationship: spatially_disjoint_from UBERON:0002685 {source="ABA"} ! anteroventral nucleus relationship: spatially_disjoint_from UBERON:0002984 {source="ABA"} ! lateral dorsal nucleus xref: SCTID:279127002 ! Entire anterodorsal nucleus of thalamus +xref: UMLS:C0228318 {source="NIF_GrossAnatomy:birnlex_1358"} [Term] id: UBERON:0014521 @@ -80320,6 +80719,7 @@ relationship: spatially_disjoint_from UBERON:0002679 {source="ABA"} ! anterodors relationship: spatially_disjoint_from UBERON:0002685 {source="ABA"} ! anteroventral nucleus relationship: spatially_disjoint_from UBERON:0002984 {source="ABA"} ! lateral dorsal nucleus xref: SCTID:279128007 ! Entire anteromedial nucleus of thalamus +xref: UMLS:C0228319 {source="NIF_GrossAnatomy:birnlex_1365"} [Term] id: UBERON:0002682 @@ -80365,6 +80765,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png property_value: external_definition "Hindbrain motor nucleus which is the origin of motor axons of cranial nerve VI. From Neuroanatomy of the Zebrafish Brain.[TAO]" xsd:string {ontology="TAO", external_class="TAO:0000713", date_retrieved="2012-08-14", source="ISBN:3764351209"} synonym: "abducens motor nuclei" EXACT PLURAL [TAO:0000713] xref: UMLS:C0152407 +xref: UMLS:C0152407 {source="NIF_GrossAnatomy:birnlex_1366"} [Term] id: UBERON:0002683 @@ -80383,6 +80784,7 @@ is_a: UBERON:0000093 ! sulcus xref: SCTID:279357002 ! Entire rhinal sulcus synonym: "sulcus rhinalis; fissura rhinalis" RELATED LATIN [Wikipedia:Rhinal_sulcus] xref: http://upload.wikimedia.org/wikipedia/commons/c/ce/Gehirn,_basal_-_beschriftet_lat.svg +xref: UMLS:C0228254 {source="NIF_GrossAnatomy:birnlex_1368"} [Term] id: UBERON:0002685 @@ -80410,6 +80812,7 @@ relationship: spatially_disjoint_from UBERON:0002681 {source="ABA"} ! anteromedi relationship: spatially_disjoint_from UBERON:0002984 {source="ABA"} ! lateral dorsal nucleus xref: SCTID:279130009 ! Entire anteroventral nucleus of thalamus relationship: part_of UBERON:0002788 {source="NIFSTD"} ! anterior nuclear group +xref: UMLS:C0752050 {source="NIF_GrossAnatomy:birnlex_1372"} [Term] id: UBERON:0002686 @@ -80428,6 +80831,7 @@ xref: SCTID:279186009 ! Entire angular gyrus synonym: "gyrus angularis" RELATED LATIN [Wikipedia:Angular_gyrus] xref: http://upload.wikimedia.org/wikipedia/commons/8/86/Surfacegyri.JPG xref: UMLS:C0152305 +xref: UMLS:C0152305 {source="NIF_GrossAnatomy:birnlex_1376"} [Term] id: UBERON:0002687 @@ -80443,6 +80847,7 @@ xref: FMA:62198 ! area X xref: NIF_GrossAnatomy:birnlex_1379 ! Area X is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0001925 {source="FMA"} ! ventral lateral nucleus +xref: UMLS:C0262201 {source="NIF_GrossAnatomy:birnlex_1379"} [Term] id: UBERON:0002689 @@ -80469,6 +80874,7 @@ relationship: spatially_disjoint_from UBERON:0007626 {source="ABA"} ! subparaven relationship: spatially_disjoint_from UBERON:0002034 {source="ABA"} ! suprachiasmatic nucleus relationship: spatially_disjoint_from UBERON:0002219 {source="ABA"} ! subfornical organ synonym: "organum vasculosum laminae terminalis" EXACT LATIN [FMA:TA, FMA:62315] +xref: UMLS:C0175316 {source="NIF_GrossAnatomy:birnlex_1400"} [Term] id: UBERON:0001929 @@ -80502,6 +80908,7 @@ xref: SCTID:369130007 ! Entire supraoptic nucleus synonym: "nucleus supraopticus" RELATED LATIN [Wikipedia:Supraoptic_nucleus] xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/SONss.jpg subset: efo_slim +xref: UMLS:C0038869 {source="NIF_GrossAnatomy:birnlex_1411"} [Term] id: UBERON:0002690 @@ -80516,6 +80923,7 @@ relationship: spatially_disjoint_from UBERON:0002689 {source="ABA"} ! supraoptic relationship: spatially_disjoint_from UBERON:0007626 {source="ABA"} ! subparaventricular zone relationship: spatially_disjoint_from UBERON:0002034 {source="ABA"} ! suprachiasmatic nucleus relationship: spatially_disjoint_from UBERON:0002219 {source="ABA"} ! subfornical organ +xref: UMLS:C0262200 {source="NIF_GrossAnatomy:birnlex_1401"} [Term] id: UBERON:0002691 @@ -80552,6 +80960,7 @@ relationship: spatially_disjoint_from UBERON:0002438 {source="ABA"} ! ventral te xref: http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray712.png subset: efo_slim property_value: external_definition "Region of the mesencephalon that arises from a small area of the neural plate, spanning the midline immediately adjacent, and being slightly posterior to the dorsal tegmentum area[XAO:0004226, PMID:2351962]." xsd:string {source="XAO:0004226, PMID:2351962"} +xref: UMLS:C0175405 {source="NIF_GrossAnatomy:birnlex_1415"} [Term] id: UBERON:0013737 @@ -80598,6 +81007,7 @@ xref: NIF_GrossAnatomy:birnlex_4038 ! Medial parabrachial nucleus is_a: UBERON:0007634 ! parabrachial nucleus relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum synonym: "nucleus parabrachialis medialis" RELATED LATIN [Wikipedia:Medial_parabrachial_nucleus] +xref: UMLS:C0175446 {source="NIF_GrossAnatomy:birnlex_4038"} [Term] id: UBERON:0003007 @@ -80609,6 +81019,7 @@ xref: FMA:72481 ! Lateral parabrachial nucleus xref: NIF_GrossAnatomy:birnlex_897 ! Lateral parabrachial nucleus is_a: UBERON:0007634 ! parabrachial nucleus relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum +xref: UMLS:C0175445 {source="NIF_GrossAnatomy:birnlex_897"} [Term] id: UBERON:0002693 @@ -80626,6 +81037,7 @@ xref: NIF_GrossAnatomy:birnlex_1422 ! Occipitotemporal sulcus xref: BM:Tel-Cx-OTS ! occipito-temporal sulcus is_a: UBERON:0000093 ! sulcus xref: SCTID:369220009 ! Entire occipitotemporal sulcus +xref: UMLS:C0228245 {source="NIF_GrossAnatomy:birnlex_1422"} [Term] id: UBERON:0011590 @@ -80645,6 +81057,7 @@ synonym: "anterior hypothalamic decussation of Ganser" EXACT [FMA:62053] xref: FMA:62053 ! Anterior hypothalamic commissure xref: NIF_GrossAnatomy:birnlex_1424 ! Anterior hypothalamic commissure is_a: UBERON:0011590 {source="FMA"} ! commissure of diencephalon +xref: UMLS:C0175337 {source="NIF_GrossAnatomy:birnlex_1424"} [Term] id: UBERON:0002695 @@ -80675,6 +81088,7 @@ synonym: "sulcus parietooccipitalis" RELATED LATIN [Wikipedia:Parieto-occipital_ synonym: "fissura parietooccipitalis" RELATED LATIN [Wikipedia:Parieto-occipital_sulcus] xref: http://upload.wikimedia.org/wikipedia/commons/5/5d/Gray726_parieto-occipital_sulcus.png xref: UMLS:C1744592 +xref: UMLS:C0228191 {source="NIF_GrossAnatomy:birnlex_1428"} [Term] id: UBERON:0002696 @@ -80696,6 +81110,7 @@ relationship: spatially_disjoint_from UBERON:0001966 {source="ABA"} ! substantia relationship: spatially_disjoint_from UBERON:0002691 {source="ABA"} ! ventral tegmental area relationship: spatially_disjoint_from UBERON:0002438 {source="ABA"} ! ventral tegmental nucleus relationship: part_of UBERON:0002639 {source="NIFSTD"} ! midbrain reticular formation +xref: UMLS:C0175396 {source="NIF_GrossAnatomy:birnlex_1430"} [Term] id: UBERON:0002697 @@ -80716,6 +81131,7 @@ xref: NIF_GrossAnatomy:birnlex_1433 ! Dorsal supraoptic decussation is_a: UBERON:0001020 ! commissure relationship: part_of UBERON:0002550 {source="NIF_GrossAnatomy"} ! anterior hypothalamic region synonym: "commissura supraoptica dorsalis" EXACT LATIN [FMA:TA, FMA:62051] +xref: UMLS:C0175338 {source="NIF_GrossAnatomy:birnlex_1433"} [Term] id: UBERON:0002698 @@ -80730,6 +81146,7 @@ xref: FMA:83739 ! Preoccipital notch xref: NIF_GrossAnatomy:birnlex_1436 ! Preoccipital notch is_a: UBERON:0000464 ! anatomical space xref: SCTID:369229005 ! Entire preoccipital notch +xref: UMLS:C0228192 {source="NIF_GrossAnatomy:birnlex_1436"} [Term] id: UBERON:0002699 @@ -80740,6 +81157,7 @@ xref: FMA:62054 ! Supraopticohypophysial tract xref: NIF_GrossAnatomy:birnlex_1440 ! Supraopticohypophysial tract is_a: UBERON:0002316 ! white matter of neuraxis synonym: "tractus supraopticohypophysialis" EXACT LATIN [FMA:TA, FMA:62054] +xref: UMLS:C0228368 {source="NIF_GrossAnatomy:birnlex_1440"} [Term] id: UBERON:0002700 @@ -80749,6 +81167,7 @@ xref: FMA:72428 ! Subcuneiform nucleus xref: NIF_GrossAnatomy:birnlex_1441 ! Subcuneiform nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002639 {source="NIFSTD"} ! midbrain reticular formation +xref: UMLS:C0175397 {source="NIF_GrossAnatomy:birnlex_1441"} [Term] @@ -80770,6 +81189,7 @@ synonym: "gyrus frontalis medialis" EXACT LATIN [FMA:TA, FMA:61859] xref: SCTID:362332009 ! Entire middle frontal gyrus synonym: "gyrus frontalis medius" RELATED LATIN [Wikipedia:Middle_frontal_gyrus] xref: http://upload.wikimedia.org/wikipedia/commons/7/7f/Middle_frontal_gyrus.png +xref: UMLS:C0152297 {source="NIF_GrossAnatomy:birnlex_1451"} [Term] id: UBERON:0002703 @@ -80788,6 +81208,7 @@ is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001870 ! frontal lobe xref: UMLS:C0152299 subset: efo_slim +xref: UMLS:C0152299 {source="NIF_GrossAnatomy:birnlex_1455"} [Term] id: UBERON:0002704 @@ -80833,6 +81254,7 @@ relationship: spatially_disjoint_from UBERON:0001935 {source="ABA"} ! ventromedi synonym: "area hypothalamica posterior" EXACT LATIN [FMA:TA, FMA:62350] xref: SCTID:362385002 ! Entire caudal area of hypothalamus relationship: part_of UBERON:0002770 {source="NIFSTD"} ! posterior hypothalamic region +xref: UMLS:C0228385 {source="NIF_GrossAnatomy:birnlex_1463"} [Term] id: UBERON:0002707 @@ -80850,6 +81272,7 @@ is_a: UBERON:0007702 ! tract of brain relationship: part_of UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0001896 ! medulla oblongata xref: SCTID:362325000 ! Entire pyramidal tract +xref: UMLS:C0034229 {source="NIF_GrossAnatomy:birnlex_1464"} [Term] id: UBERON:0002708 @@ -80864,6 +81287,7 @@ xref: NIF_GrossAnatomy:birnlex_1466 ! Posterior periventricular nucleus xref: BTO:0002479 ! posterior periventricular nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002770 {source="NIFSTD"} ! posterior hypothalamic region +xref: UMLS:C0262317 {source="NIF_GrossAnatomy:birnlex_1466"} [Term] id: UBERON:0002709 @@ -80888,6 +81312,7 @@ relationship: spatially_disjoint_from UBERON:0003033 {source="ABA"} ! supragenic xref: SCTID:424395006 ! Entire nucleus of posterior nuclear group of thalamus xref: TAO:0000325 ! caudal thalamic nucleus (also: UBERON:0003030 'posterior nucleus of thalamus') synonym: "caudal thalamic nucleus" RELATED [TAO:0000325] +xref: UMLS:C0175298 {source="NIF_GrossAnatomy:birnlex_1467"} [Term] id: UBERON:0002710 @@ -80911,6 +81336,7 @@ relationship: adjacent_to UBERON:0002967 ! cingulate gyrus xref: SCTID:279350000 ! Entire cingulate sulcus synonym: "sulcus cinguli" RELATED LATIN [Wikipedia:Cingulate_sulcus] xref: http://upload.wikimedia.org/wikipedia/commons/2/2e/Gray727_cingulate_sulcus.svg +xref: UMLS:C0228189 {source="NIF_GrossAnatomy:birnlex_1468"} [Term] id: UBERON:0002711 @@ -80925,6 +81351,7 @@ relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: spatially_disjoint_from UBERON:0002996 {source="ABA"} ! nucleus of optic tract relationship: spatially_disjoint_from UBERON:0002565 {source="ABA"} ! olivary pretectal nucleus relationship: spatially_disjoint_from UBERON:0006848 {source="ABA"} ! posterior pretectal nucleus +xref: UMLS:C0175386 {source="NIF_GrossAnatomy:birnlex_1470"} [Term] id: UBERON:0002712 ! premammillary nucleus @@ -80934,6 +81361,7 @@ xref: FMA:62348 ! Premammillary nucleus xref: NIF_GrossAnatomy:birnlex_1473 ! Premammillary nucleus is_a: UBERON:0006568 {source="FMA"} ! hypothalamic nucleus relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region +xref: UMLS:C0262317 {source="NIF_GrossAnatomy:birnlex_1473"} [Term] id: UBERON:0007767 @@ -81024,6 +81452,7 @@ xref: NIF_GrossAnatomy:birnlex_1475 ! Circular sulcus of insula is_a: UBERON:0002912 ! marginal sulcus intersection_of: UBERON:0002912 ! marginal sulcus intersection_of: part_of UBERON:0002022 ! insula +xref: UMLS:C0228258 {source="NIF_GrossAnatomy:birnlex_1475"} [Term] id: UBERON:0002714 @@ -81042,6 +81471,7 @@ relationship: part_of UBERON:0001896 ! medulla oblongata xref: SCTID:369264001 ! Entire rubrospinal tract synonym: "tractus rubrospinalis" RELATED LATIN [Wikipedia:Rubrospinal_tract] xref: http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg +xref: UMLS:C0152377 {source="NIF_GrossAnatomy:birnlex_1476"} [Term] id: UBERON:0002716 @@ -81063,6 +81493,7 @@ synonym: "sulcus collateralis" RELATED LATIN [Wikipedia:Collateral_fissure] synonym: "fissura collateralis" RELATED LATIN [Wikipedia:Collateral_fissure] xref: http://upload.wikimedia.org/wikipedia/commons/9/93/Gray738.png xref: UMLS:C0228226 +xref: UMLS:C0228226 {source="NIF_GrossAnatomy:birnlex_1480"} [Term] id: UBERON:0002717 @@ -81080,6 +81511,7 @@ relationship: part_of UBERON:0001943 {source="FMA", source="NIF"} ! midbrain teg relationship: overlaps UBERON:0002660 ! medial longitudinal fasciculus of midbrain synonym: "nucleus interstitialis" RELATED LATIN [Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus] xref: http://upload.wikimedia.org/wikipedia/commons/9/90/Gray710.png +xref: UMLS:C0175403 {source="NIF_GrossAnatomy:birnlex_1481"} [Term] id: UBERON:2000815 @@ -81109,6 +81541,7 @@ relationship: part_of UBERON:0001896 ! medulla oblongata relationship: has_function_in GO:0019230 {source="Wikipedia"} ! proprioception xref: SCTID:362607001 ! Entire spino-olivary tract synonym: "tractus spinoolivaris" RELATED LATIN [Wikipedia:Spino-olivary_tract] +xref: UMLS:C0175562 {source="NIF_GrossAnatomy:birnlex_1484"} [Term] id: UBERON:0002720 @@ -81119,6 +81552,8 @@ xref: NIF_GrossAnatomy:birnlex_1486 ! Mammillary peduncle is_a: UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region xref: SCTID:369146004 ! Entire mammillary peduncle +xref: UMLS:C0152358 {source="NIF_GrossAnatomy:birnlex_1486"} +xref: UMLS:C1289573 {source="NIF_GrossAnatomy:birnlex_1486"} [Term] id: UBERON:0002722 @@ -81159,6 +81594,7 @@ xref: SCTID:280163001 ! Entire trochlear nucleus xref: TAO:0000450 ! trochlear motor nucleus synonym: "nucleus nervi trochlearis" RELATED LATIN [Wikipedia:Trochlear_nucleus] xref: http://upload.wikimedia.org/wikipedia/commons/c/c6/Drn.png +xref: UMLS:C0152406 {source="NIF_GrossAnatomy:birnlex_1488"} [Term] id: UBERON:0002723 @@ -81169,6 +81605,7 @@ synonym: "principal mammillary tract" EXACT [NIF_GrossAnatomy:birnlex_1492] xref: FMA:62057 ! Mammillary princeps fasciculus xref: NIF_GrossAnatomy:birnlex_1492 ! Mammillary princeps fasciculus is_a: UBERON:0002316 ! white matter of neuraxis +xref: UMLS:C0175331 {source="NIF_GrossAnatomy:birnlex_1492"} [Term] id: UBERON:0002724 @@ -81181,6 +81618,7 @@ xref: FMA:75266 ! Limen of insula xref: NIF_GrossAnatomy:birnlex_1493 ! Limen of insula is_a: UBERON:0000464 ! anatomical space xref: SCTID:369215009 ! Entire limen insulae +xref: UMLS:C0228263 {source="NIF_GrossAnatomy:birnlex_1493"} [Term] id: UBERON:0002730 @@ -81222,6 +81660,7 @@ relationship: part_of UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0002567 {source="NIF_GrossAnatomy"} ! basal part of pons synonym: "fibrae pontis longitudinales" EXACT LATIN [FMA:TA, FMA:72513] xref: SCTID:361544009 ! Entire longitudinal fasciculus of pons +xref: UMLS:C0228450 {source="NIF_GrossAnatomy:birnlex_1523"} [Term] id: UBERON:0002733 @@ -81259,6 +81698,7 @@ xref: FMA:62164 ! Rostral intralaminar nuclear group xref: NIF_GrossAnatomy:birnlex_794 ! Rostral intralaminar nuclei is_a: UBERON:0007692 {source="FMA"} ! nucleus of thalamus relationship: part_of UBERON:0002733 {source="FMA"} ! intralaminar nuclear group +xref: UMLS:C0175263 {source="NIF_GrossAnatomy:birnlex_794"} [Term] id: UBERON:0002734 @@ -81274,6 +81714,7 @@ is_a: UBERON:0000093 ! sulcus xref: SCTID:279344005 ! Entire superior temporal sulcus xref: UMLS:C0228237 is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0228237 {source="NIF_GrossAnatomy:birnlex_1534"} [Term] id: UBERON:0002735 @@ -81290,6 +81731,7 @@ relationship: part_of UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0002567 {source="NIF_GrossAnatomy"} ! basal part of pons synonym: "fibrae pontis transversae" EXACT LATIN [FMA:TA, FMA:72514] xref: SCTID:79836003 ! Superficial transverse fibers of pons +xref: UMLS:C0228446 {source="NIF_GrossAnatomy:birnlex_1535"} [Term] id: UBERON:0002736 @@ -81335,6 +81777,7 @@ xref: NIF_GrossAnatomy:birnlex_1541 ! Isthmus of cingulate gyrus is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002967 ! cingulate gyrus def: "Component of the cingulate cortex. The rostral and caudal boundaries were the posterior division of the cingulate cortex and the parahippocampal gyrus respectively. The medial and lateral boundaries were the medial wall (area unknown) and the precuneus respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1541] +xref: UMLS:C0175192 {source="NIF_GrossAnatomy:birnlex_1541"} [Term] id: UBERON:0002739 ! medial dorsal nucleus @@ -81389,6 +81832,7 @@ xref: NIF_GrossAnatomy:birnlex_1546 ! Posterior cingulate gyrus xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray727.svg/200px-Gray727.svg.png is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0002967 ! cingulate gyrus +xref: UMLS:C0175191 {source="NIF_GrossAnatomy:birnlex_1546"} [Term] id: UBERON:0002741 @@ -81416,6 +81860,7 @@ xref: MESH:A08.186.211.730.885.380 ! diagonal band of broca is_a: UBERON:0002316 ! white matter of neuraxis synonym: "stria diagonalis" RELATED LATIN [Wikipedia:Diagonal_band_of_Broca] xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray724.png +xref: UMLS:C0175226 {source="NIF_GrossAnatomy:birnlex_1551"} [Term] id: UBERON:0002742 @@ -81430,6 +81875,7 @@ xref: NIF_GrossAnatomy:birnlex_1554 ! Lamina of septum pellucidum is_a: UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0004714 {source="FMA"} ! septum pellucidum xref: SCTID:12164006 ! Lamina septum pellucidum +xref: UMLS:C0152278 {source="NIF_GrossAnatomy:birnlex_1554"} [Term] id: UBERON:0009857 @@ -81476,6 +81922,7 @@ synonym: "ventral amygdalofugal pathway" EXACT [NIF_GrossAnatomy:birnlex_1563] xref: FMA:61977 ! Ventral amygdalofugal projection xref: NIF_GrossAnatomy:birnlex_1563 ! Ventral amygdalofugal projection is_a: UBERON:0002316 ! white matter of neuraxis +xref: UMLS:C0175242 {source="NIF_GrossAnatomy:birnlex_1563"} [Term] id: UBERON:0002746 @@ -81486,6 +81933,7 @@ xref: FMA:62328 ! Intermediate periventricular nucleus xref: NIF_GrossAnatomy:birnlex_1564 ! Intermediate periventricular nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002555 {source="NIFSTD"} ! intermediate hypothalamic region +xref: UMLS:C0694604 {source="NIF_GrossAnatomy:birnlex_1564"} [Term] id: UBERON:0002747 @@ -81495,6 +81943,7 @@ xref: FMA:72539 ! Neodentate part of dentate nucleus xref: NIF_GrossAnatomy:birnlex_1567 ! Neodentate part of dentate nucleus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0002132 ! dentate nucleus +xref: UMLS:C0175485 {source="NIF_GrossAnatomy:birnlex_1567"} [Term] id: UBERON:0002748 @@ -81507,6 +81956,7 @@ is_a: UBERON:0003002 ! medial lemniscus intersection_of: UBERON:0003002 ! medial lemniscus intersection_of: part_of UBERON:0001896 ! medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata +xref: UMLS:C0228534 {source="NIF_GrossAnatomy:birnlex_1570"} [Term] id: UBERON:0002749 @@ -81533,6 +81983,7 @@ is_a: UBERON:0002309 ! medial longitudinal fasciculus intersection_of: UBERON:0002309 ! medial longitudinal fasciculus intersection_of: part_of UBERON:0001896 ! medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata +xref: UMLS:C0228536 {source="NIF_GrossAnatomy:birnlex_1574"} [Term] id: UBERON:0002751 @@ -81568,6 +82019,7 @@ relationship: part_of UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0001896 ! medulla oblongata synonym: "t. olivocerebellaris" RELATED LATIN [Wikipedia:Olivocerebellar_tract] xref: http://upload.wikimedia.org/wikipedia/commons/9/93/Gray695.png +xref: UMLS:C0175557 {source="NIF_GrossAnatomy:birnlex_1579"} [Term] id: UBERON:0005413 ! spinocerebellar tract @@ -81601,6 +82053,7 @@ relationship: has_function_in GO:0019230 {source="Wikipedia"} ! proprioception xref: SCTID:369285001 ! Entire ventral spinocerebellar tract xref: http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg property_value: external_definition "The ventral spinocerebellar tract conveys proprioceptive information from the body to the cerebellum. It is part of the somatosensory system and runs in parallel with the dorsal spinocerebellar tract. Both these tracts involve two neurons and end up on the same side of the body. The ventral tract (under L2/L3) gets its proprioceptive/fine touch/vibration information from a first order neuron, with its cell body in a dorsal ganglion. The axon runs via the fila radicularia to the dorsal horn of the grey matter. There it makes a synapse with the dendrites of two neurons: they send their axons bilaterally to the ventral border of the lateral funiculi. The ventral spinocerebellar tract then enters the cerebellum via the superior cerebellar peduncle. This is in contrast with the dorsal spinocerebellar tract (C8 - L2/L3), which only has 1 unilateral axon that has its cell body in the Clarke's nuclei (only at the level of C8 - L2/L3). The fibers of the ventral spinocerebellar tract then eventually enter the cerebellum via the superior cerebellar peduncle. This is one of the few afferent tracts through the superior cerebellar peduncle. Originates from ventral horn at lumbosacral spinal levels. Axons first cross midline in the spinal cord and run in the ventral border of the lateral funiculi. These axons ascend up to the pons where they join the superior cerebellar peduncle to enter the cerebellum. Once in the deep white matter of the cerebellum, the axons recross the midline, give off collaterals to the globose and emboliform nuclei, and terminate in the cortex of the anterior lobe and vermis of the posterior lobe. [WP,unvetted][Wikipedia:Ventral_spinocerebellar_tract]." xsd:string {source="Wikipedia:Ventral_spinocerebellar_tract"} +xref: UMLS:C0175561 {source="NIF_GrossAnatomy:birnlex_848"} [Term] id: UBERON:0002753 @@ -81620,6 +82073,7 @@ relationship: has_function_in GO:0019230 {source="Wikipedia"} ! proprioception xref: SCTID:369284002 ! Entire dorsal spinocerebellar tract xref: http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg property_value: external_definition "The dorsal spinocerebellar tract (posterior spinocerebellar tract, Flechsig's fasciculus, Flechsig's tract) conveys proprioceptive information from the body to the cerebellum. It is part of the somatosensory system and runs in parallel with the ventral spinocerebellar tract. Proprioceptive information is taken to the via central processes of dorsal root ganglia (first order neurons). These central processes travel through the dorsal horn where they synapse with second order neurons of Clarke's nucleus. Axon fibers from Clarke's Nucleus convey this proprioceptive information in the spinal cord in the peripheral region of the posteriolateral funiculus ipsilaterally until it reaches the cerebellum, where unconscious proprioceptive information is processed. This tract involves two neurons and ends up on the same side of the body. [WP,unvetted][Wikipedia:Dorsal_spinocerebellar_tract]." xsd:string {source="Wikipedia:Dorsal_spinocerebellar_tract"} +xref: UMLS:C0175560 {source="NIF_GrossAnatomy:birnlex_1585"} [Term] id: UBERON:0002640 @@ -81634,6 +82088,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/98/Gray699.png/200px is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0001896 ! medulla oblongata +xref: UMLS:C0175556 {source="NIF_GrossAnatomy:birnlex_1238"} [Term] id: UBERON:0002754 @@ -81646,6 +82101,7 @@ xref: NIF_GrossAnatomy:birnlex_1590 ! Predorsal bundle is_a: UBERON:0005838 {source="FMA"} ! fasciculus of brain relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata relationship: part_of UBERON:0002316 {source="NIF_GrossAnatomy"} ! white matter +xref: UMLS:C0175542 {source="NIF_GrossAnatomy:birnlex_1590"} [Term] id: UBERON:0002755 @@ -81672,6 +82128,7 @@ synonym: "decussatio pyramidum medullae oblongatae" EXACT LATIN [FMA:TA, FMA:726 synonym: "decussatio pyramidum" EXACT LATIN [FMA:TA, FMA:72633] xref: SCTID:369058001 ! Entire pyramidal decussation xref: http://upload.wikimedia.org/wikipedia/commons/a/ac/Gray684.png +xref: UMLS:C0011128 {source="NIF_GrossAnatomy:birnlex_1594"} [Term] id: UBERON:0002756 @@ -81683,6 +82140,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gray727_anterior_ is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0002967 ! cingulate gyrus relationship: part_of UBERON:0009835 ! anterior cingulate cortex +xref: UMLS:C0175190 {source="NIF_GrossAnatomy:birnlex_1603"} [Term] id: UBERON:0009835 ! anterior cingulate cortex @@ -81747,6 +82205,7 @@ is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0001896 ! medulla oblongata xref: SCTID:369092003 ! Entire ventral corticospinal tract +xref: UMLS:C0152403 {source="NIF_GrossAnatomy:birnlex_1618"} [Term] id: UBERON:0002761 @@ -81776,6 +82235,7 @@ xref: FMA:83764 ! Inferior precentral sulcus xref: NIF_GrossAnatomy:birnlex_1627 ! Inferior precentral sulcus is_a: UBERON:0000093 ! sulcus is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0262257 {source="NIF_GrossAnatomy:birnlex_1627"} [Term] id: UBERON:0014530 @@ -81811,6 +82271,7 @@ intersection_of: UBERON:0014530 ! lamina of neuraxis intersection_of: part_of UBERON:0002129 ! cerebellar cortex xref: NIF_GrossAnatomy:birnlex_1105 ! White laminae of cerebellum xref: SCTID:362413004 ! Entire laminae albae of cerebellar cortex +xref: UMLS:C0228472 {source="NIF_GrossAnatomy:birnlex_1105"} [Term] id: UBERON:0002727 @@ -81833,6 +82294,7 @@ relationship: part_of UBERON:0001875 {source="NIF_GrossAnatomy", source="FMA"} ! synonym: "lamina medullaris interna corporis striati" EXACT LATIN [FMA:TA, FMA:62470] synonym: "lamina medullaris medialis corporis striati" EXACT LATIN [FMA:TA, FMA:62470] xref: SCTID:369205003 ! Entire medial medullary lamina +xref: UMLS:C0152340 {source="NIF_GrossAnatomy:birnlex_1501"} [Term] id: UBERON:0002765 @@ -81860,6 +82322,7 @@ relationship: part_of UBERON:0001875 {source="NIF_GrossAnatomy", source="FMA"} ! synonym: "lamina medullaris externa corporis striati" EXACT LATIN [FMA:TA, FMA:62469] synonym: "lamina medullaris lateralis corporis striati" EXACT LATIN [FMA:TA, FMA:62469] xref: SCTID:369204004 ! Entire lateral medullary lamina +xref: UMLS:C0152339 {source="NIF_GrossAnatomy:birnlex_1634"} [Term] id: UBERON:0002763 @@ -81875,6 +82338,7 @@ xref: NIF_GrossAnatomy:birnlex_1626 ! Accessory medullary lamina is_a: UBERON:0014532 {source="FMA"} ! lamina of cerebral hemisphere relationship: part_of UBERON:0001875 {source="FMA"} ! globus pallidus synonym: "lamina medullaris accessoria corporis striati" EXACT LATIN [FMA:TA, FMA:62471] +xref: UMLS:C0175213 {source="NIF_GrossAnatomy:birnlex_1626"} [Term] id: UBERON:0014533 ! medullary lamina of thalamus @@ -81899,6 +82363,7 @@ xref: NIF_GrossAnatomy:birnlex_1621 ! Internal medullary lamina of thalamus is_a: UBERON:0014533 ! medullary lamina of thalamus synonym: "lamina medullaris medialis thalami" EXACT LATIN [FMA:TA, FMA:62079] xref: SCTID:369161003 ! Entire internal medullary lamina of thalamus +xref: UMLS:C0228322 {source="NIF_GrossAnatomy:birnlex_1621"} [Term] id: UBERON:0014534 @@ -81927,6 +82392,7 @@ synonym: "gyrus occipitotemporalis lateralis" EXACT LATIN [FMA:TA, FMA:61908] xref: SCTID:110678003 ! Fusiform gyrus synonym: "gyrus fusiformis" RELATED LATIN [Wikipedia:Fusiform_gyrus] xref: http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray727.svg +xref: UMLS:C0152313 {source="NIF_GrossAnatomy:birnlex_1641"} [Term] id: UBERON:0002767 @@ -81936,6 +82402,7 @@ xref: FMA:83767 ! Inferior rostral sulcus xref: NIF_GrossAnatomy:birnlex_1642 ! Inferior rostral sulcus is_a: UBERON:0000093 ! sulcus is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0694584 {source="NIF_GrossAnatomy:birnlex_1642"} [Term] id: UBERON:0002768 @@ -81956,6 +82423,7 @@ xref: SCTID:369289007 ! Entire vestibulospinal tract xref: TAO:0000709 ! vestibulo-spinal tract synonym: "tractus vestibulospinalis" RELATED LATIN [Wikipedia:Vestibulospinal_tract] xref: http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg +xref: UMLS:C0152404 {source="NIF_GrossAnatomy:birnlex_1643"} [Term] id: UBERON:0002769 @@ -81976,6 +82444,7 @@ xref: SCTID:362345008 ! Entire superior temporal gyrus synonym: "gyrus temporalis superior" RELATED LATIN [Wikipedia:Superior_temporal_gyrus] xref: http://upload.wikimedia.org/wikipedia/commons/1/1d/Superior_temporal_gyrus.png subset: efo_slim +xref: UMLS:C0152309 {source="NIF_GrossAnatomy:birnlex_1648"} [Term] id: UBERON:0002770 @@ -81990,6 +82459,7 @@ xref: GAID:651 ! posterior hypothalamus xref: MESH:A08.186.211.730.385.357.362 ! posterior hypothalamus is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001898 ! hypothalamus +xref: UMLS:C0020670 {source="NIF_GrossAnatomy:birnlex_1651"} [Term] id: UBERON:0002771 @@ -82010,6 +82480,7 @@ relationship: part_of UBERON:0001871 ! temporal lobe xref: SCTID:279190006 ! Entire middle temporal gyrus xref: http://upload.wikimedia.org/wikipedia/commons/4/49/WOROI_60_loc.png subset: efo_slim +xref: UMLS:C0152310 {source="NIF_GrossAnatomy:birnlex_1653"} [Term] id: UBERON:0002772 @@ -82030,6 +82501,8 @@ synonym: "sulcus olfactorius lobi frontalis" RELATED LATIN [Wikipedia:Olfactory_ xref: http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray729_olfactory_sulcus.png xref: UMLS:C0228205 is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0228205 {source="NIF_GrossAnatomy:birnlex_1655"} +xref: UMLS:C1281082 {source="NIF_GrossAnatomy:birnlex_1655"} [Term] id: UBERON:0002773 @@ -82042,6 +82515,7 @@ xref: FMA:61909 ! Anterior transverse temporal gyrus xref: NIF_GrossAnatomy:birnlex_1657 ! Anterior transverse temporal gyrus is_a: UBERON:0003939 ! transverse gyrus of Heschl xref: SCTID:279192003 ! Entire anterior transverse temporal gyrus +xref: UMLS:C0262198 {source="NIF_GrossAnatomy:birnlex_1657"} [Term] id: UBERON:0003939 ! transverse gyrus of Heschl @@ -82063,6 +82537,7 @@ xref: FMA:61910 ! Posterior transverse temporal gyrus xref: NIF_GrossAnatomy:birnlex_1661 ! Posterior transverse temporal gyrus is_a: UBERON:0003939 ! transverse gyrus of Heschl xref: SCTID:279193008 ! Entire posterior transverse temporal gyrus +xref: UMLS:C0262320 {source="NIF_GrossAnatomy:birnlex_1661"} [Term] id: UBERON:0002775 @@ -82076,6 +82551,7 @@ xref: NIF_GrossAnatomy:birnlex_1666 ! Olivocochlear bundle is_a: UBERON:0002316 ! white matter of neuraxis synonym: "tractus olivocochlearis" EXACT LATIN [FMA:TA, FMA:72485] xref: SCTID:369030009 ! Entire tractus olivocochlearis +xref: UMLS:C0228447 {source="NIF_GrossAnatomy:birnlex_1666"} [Term] id: UBERON:0002776 @@ -82106,6 +82582,7 @@ relationship: spatially_disjoint_from UBERON:0002144 {source="ABA"} ! peripedunc xref: SCTID:279125005 ! Entire nucleus of ventral nuclear group of thalamus xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png property_value: external_definition "The ventral nuclear group is a collection of nuclei on the ventral side of the thalamus. According to MeSH, it consists of the following: ventral anterior nucleus ventral lateral nucleus ventral posterior nucleus [WP,unvetted][Wikipedia:Ventral_nuclear_group]." xsd:string {source="Wikipedia:Ventral_nuclear_group"} +xref: UMLS:C0228333 {source="NIF_GrossAnatomy:birnlex_1669"} [Term] id: UBERON:0002780 @@ -82128,6 +82605,7 @@ is_a: UBERON:0001018 ! axon tract relationship: part_of UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0009643 ! central tegmental tract relationship: part_of UBERON:0003023 ! pontine tegmentum +xref: UMLS:C0228443 {source="NIF_GrossAnatomy:birnlex_1683"} [Term] id: UBERON:0002784 @@ -82166,6 +82644,7 @@ xref: NIF_GrossAnatomy:birnlex_1689 ! Abducens nerve fibers xref: NIF_GrossAnatomy:birnlex_1277 ! Abducens nerve root is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve relationship: overlaps UBERON:0001896 {source="ZFA-abduced"} ! medulla oblongata +xref: UMLS:C0175450 {source="NIF_GrossAnatomy:birnlex_1689"} [Term] id: UBERON:0009908 @@ -82192,6 +82671,7 @@ synonym: "trochlear neural decussation" EXACT [FMA:72488] xref: FMA:72488 ! Decussation of trochlear nerve xref: NIF_GrossAnatomy:birnlex_1690 ! Decussation of trochlear nerve is_a: UBERON:0007418 ! decussation of neuraxis +xref: UMLS:C0175448 {source="NIF_GrossAnatomy:birnlex_1690"} [Term] id: UBERON:0002788 @@ -82225,6 +82705,7 @@ relationship: part_of UBERON:0004703 {source="MA"} ! dorsal thalamus xref: SCTID:279124009 ! Entire nucleus of anterior nuclear group of thalamus xref: TAO:0000427 ! rostral thalamic nucleus synonym: "rostral thalamic nucleus" RELATED [TAO:0000427] +xref: UMLS:C0228316 {source="NIF_GrossAnatomy:birnlex_1692"} [Term] id: UBERON:0002789 @@ -82247,6 +82728,7 @@ xref: FMA:72496 ! Dorsal acoustic stria xref: NIF_GrossAnatomy:birnlex_1698 ! Dorsal acoustic stria is_a: UBERON:0002316 ! white matter of neuraxis synonym: "stria cochlearis posterior" EXACT LATIN [FMA:TA, FMA:72496] +xref: UMLS:C0175454 {source="NIF_GrossAnatomy:birnlex_1698"} [Term] id: UBERON:0002791 @@ -82270,6 +82752,7 @@ is_a: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: part_of UBERON:0000988 ! pons def: "A dorsal longitudinal fasciculus that is part of a pons." [OBOL:automatic] +xref: UMLS:C0262223 {source="NIF_GrossAnatomy:birnlex_1707"} [Term] id: UBERON:0002794 @@ -82284,6 +82767,7 @@ is_a: UBERON:0002309 ! medial longitudinal fasciculus intersection_of: UBERON:0002309 ! medial longitudinal fasciculus intersection_of: part_of UBERON:0000988 ! pons relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum +xref: UMLS:C0228440 {source="NIF_GrossAnatomy:birnlex_1708"} [Term] id: UBERON:0002796 @@ -82300,6 +82784,7 @@ xref: SCTID:280189001 ! Entire motor root of trigeminal nerve xref: ZFA:0000650 ! dorsal motor root of V xref: TAO:0000650 ! dorsal motor root of V synonym: "dorsal motor root of v" RELATED [TAO:0000650] +xref: UMLS:C0228707 {source="NIF_GrossAnatomy:birnlex_1717"} [Term] id: UBERON:0009907 @@ -82330,6 +82815,7 @@ relationship: adjacent_to UBERON:0002921 ! longitudinal fissure relationship: spatially_disjoint_from UBERON:0002803 ! right parietal lobe xref: SCTID:314147009 ! Entire left parietal lobe def: "A parietal lobe that is part of a left cerebral hemisphere." [OBOL:automatic] +xref: UMLS:C1281960 {source="NIF_GrossAnatomy:birnlex_1728"} [Term] id: UBERON:0002803 @@ -82341,6 +82827,7 @@ intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere relationship: adjacent_to UBERON:0002921 ! longitudinal fissure xref: SCTID:314146000 ! Entire right parietal lobe def: "A parietal lobe that is part of a right cerebral hemisphere." [OBOL:automatic] +xref: UMLS:C1281959 {source="NIF_GrossAnatomy:birnlex_1729"} [Term] id: UBERON:0002804 @@ -82371,6 +82858,7 @@ relationship: adjacent_to UBERON:0002921 ! longitudinal fissure relationship: spatially_disjoint_from UBERON:0002807 ! right occipital lobe xref: SCTID:314150007 ! Entire left occipital lobe def: "An occipital lobe that is part of a left cerebral hemisphere." [OBOL:automatic] +xref: UMLS:C1281963 {source="NIF_GrossAnatomy:birnlex_1782"} [Term] id: UBERON:0002807 @@ -82383,6 +82871,7 @@ intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere relationship: adjacent_to UBERON:0002921 ! longitudinal fissure xref: SCTID:314149007 ! Entire right occipital lobe def: "An occipital lobe that is part of a right cerebral hemisphere." [OBOL:automatic] +xref: UMLS:C1281962 {source="NIF_GrossAnatomy:birnlex_1783"} [Term] id: UBERON:0002808 @@ -82394,6 +82883,7 @@ intersection_of: UBERON:0001871 ! temporal lobe intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere xref: SCTID:314158000 ! Entire left temporal lobe def: "A temporal lobe that is part of a left cerebral hemisphere." [OBOL:automatic] +xref: UMLS:C1281971 {source="NIF_GrossAnatomy:birnlex_1784"} [Term] id: UBERON:0002809 @@ -82405,6 +82895,7 @@ intersection_of: UBERON:0001871 ! temporal lobe intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere xref: SCTID:314157005 ! Entire right temporal lobe def: "A temporal lobe that is part of a right cerebral hemisphere." [OBOL:automatic] +xref: UMLS:C1281970 {source="NIF_GrossAnatomy:birnlex_1785"} [Term] id: UBERON:0002810 @@ -82416,6 +82907,7 @@ intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere relationship: adjacent_to UBERON:0002921 ! longitudinal fissure xref: SCTID:314141005 ! Entire right frontal lobe def: "A frontal cortex that is part of a right cerebral hemisphere." [OBOL:automatic] +xref: UMLS:C1281954 {source="NIF_GrossAnatomy:birnlex_1786"} [Term] id: UBERON:0002811 @@ -82428,6 +82920,7 @@ relationship: adjacent_to UBERON:0002921 ! longitudinal fissure relationship: spatially_disjoint_from UBERON:0002810 ! right frontal lobe xref: SCTID:314142003 ! Entire left frontal lobe def: "A frontal cortex that is part of a left cerebral hemisphere." [OBOL:automatic] +xref: UMLS:C1281955 {source="NIF_GrossAnatomy:birnlex_1787"} [Term] id: UBERON:0014466 @@ -82603,6 +83096,9 @@ xref: NIF_GrossAnatomy:birnlex_2555 ! Apex of the cochlear canal is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0006106 ! cochlear canal relationship: has_function_in GO:0019230 {source="Wikipedia"} ! proprioception +xref: UMLS:C1184827 {source="NIF_GrossAnatomy:birnlex_2523"} +xref: UMLS:C0458765 {source="NIF_GrossAnatomy:birnlex_2555"} +xref: UMLS:C0458764 {source="NIF_GrossAnatomy:birnlex_2557"} [Term] id: UBERON:0002820 @@ -82612,6 +83108,7 @@ xref: FMA:75709 ! Zona arcuata of basilar membrane of cochlea xref: NIF_GrossAnatomy:birnlex_2528 ! Zona arcuata of basilar membrane of cochlea is_a: UBERON:0005764 ! acellular membrane relationship: part_of UBERON:0002226 ! basilar membrane of cochlea +xref: UMLS:C1184862 {source="NIF_GrossAnatomy:birnlex_2528"} [Term] id: UBERON:0002822 @@ -82620,6 +83117,7 @@ xref: FMA:58671 ! Macula lutea proper xref: NIF_GrossAnatomy:birnlex_2542 ! Macula lutea proper is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000053 ! macula lutea +xref: UMLS:C0934637 {source="NIF_GrossAnatomy:birnlex_2542"} [Term] id: UBERON:0002823 @@ -82631,6 +83129,8 @@ xref: FMA:58674 ! Clivus of fovea centralis xref: NIF_GrossAnatomy:birnlex_2544 ! Clivus of fovea centralis is_a: UBERON:0000466 ! immaterial anatomical entity relationship: part_of UBERON:0001786 ! fovea centralis +xref: UMLS:C0929757 {source="NIF_GrossAnatomy:birnlex_2544"} +xref: UMLS:C0929760 {source="NIF_GrossAnatomy:birnlex_2544"} [Term] id: UBERON:0002825 @@ -82642,6 +83142,7 @@ xref: NIF_GrossAnatomy:birnlex_2551 ! Superior part of vestibular ganglion xref: MA:0002778 ! vestibular ganglion superior part is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002824 ! vestibular ganglion +xref: UMLS:C1186166 {source="NIF_GrossAnatomy:birnlex_2551"} [Term] id: UBERON:0002826 @@ -82652,6 +83153,7 @@ xref: NIF_GrossAnatomy:birnlex_2552 ! Inferior part of vestibular ganglion xref: MA:0002779 ! vestibular ganglion inferior part is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002824 ! vestibular ganglion +xref: UMLS:C1186167 {source="NIF_GrossAnatomy:birnlex_2552"} [Term] id: UBERON:0002828 @@ -82670,6 +83172,7 @@ xref: BM:CV ! ventral cochlear nucleus is_a: UBERON:0001720 ! cochlear nucleus xref: SCTID:280178008 ! Entire ventral cochlear nucleus relationship: part_of UBERON:0002610 {source="NIFSTD"} ! cochlear nuclear complex +xref: UMLS:C0175500 {source="NIF_GrossAnatomy:birnlex_2567"} [Term] id: UBERON:0002829 @@ -82693,6 +83196,8 @@ synonym: "nucleus cochlearis posterior" RELATED LATIN [Wikipedia:Dorsal_cochlear xref: http://upload.wikimedia.org/wikipedia/commons/b/bb/Gray760.png xref: UMLS:C0175499 relationship: part_of UBERON:0002610 {source="NIFSTD"} ! cochlear nuclear complex +xref: UMLS:C0175499 {source="NIF_GrossAnatomy:birnlex_2569"} +xref: UMLS:C1281210 {source="NIF_GrossAnatomy:birnlex_2569"} [Term] id: UBERON:0002830 @@ -82704,6 +83209,7 @@ xref: FMA:72571 ! Anteroventral cochlear nucleus xref: NIF_GrossAnatomy:birnlex_2572 ! Anteroventral cochlear nucleus is_a: UBERON:0001720 ! cochlear nucleus relationship: part_of UBERON:0002828 {source="NIFSTD"} ! ventral cochlear nucleus +xref: UMLS:C0926557 {source="NIF_GrossAnatomy:birnlex_2572"} [Term] id: UBERON:0002831 @@ -82713,6 +83219,7 @@ xref: FMA:72572 ! Posteroventral cochlear nucleus xref: NIF_GrossAnatomy:birnlex_2573 ! Posteroventral cochlear nucleus is_a: UBERON:0001720 ! cochlear nucleus relationship: part_of UBERON:0002828 {source="NIFSTD"} ! ventral cochlear nucleus +xref: UMLS:C0926558 {source="NIF_GrossAnatomy:birnlex_2573"} [Term] id: UBERON:0007633 ! nucleus of trapezoid body @@ -82736,6 +83243,8 @@ xref: NIF_GrossAnatomy:birnlex_745 ! Trapezoid nuclear complex synonym: "set of nuclei of trapezoid body" RELATED [FMA:84023] synonym: "nuclei of trapezoid body" RELATED [FMA:84023] relationship: part_of UBERON:0002128 {source="NIFSTD"} ! superior olivary complex +xref: UMLS:C0228436 {source="NIF_GrossAnatomy:birnlex_745"} +xref: UMLS:C1289449 {source="NIF_GrossAnatomy:birnlex_745"} [Term] id: UBERON:0002832 @@ -82748,6 +83257,8 @@ is_a: UBERON:0007633 ! nucleus of trapezoid body relationship: part_of UBERON:0002128 ! superior olivary complex synonym: "nucleus anterior corporis trapezoidei" EXACT LATIN [FMA:TA, FMA:72477] xref: SCTID:369020000 ! Entire ventral nucleus of trapezoid body +xref: UMLS:C0228437 {source="NIF_GrossAnatomy:birnlex_2576"} +xref: UMLS:C1289449 {source="NIF_GrossAnatomy:birnlex_2576"} [Term] id: UBERON:0002833 @@ -82764,6 +83275,8 @@ synonym: "dorsal nucleus of trapezoid body" EXACT [NIF_GrossAnatomy:birnlex_257 xref: NIF_GrossAnatomy:birnlex_2575 ! Dorsal nucleus of trapezoid body xref: SCTID:369021001 ! Entire dorsal nucleus of trapezoid body is_a: UBERON:0007633 ! nucleus of trapezoid body +xref: UMLS:C0228438 {source="NIF_GrossAnatomy:birnlex_2575"} +xref: UMLS:C1289450 {source="NIF_GrossAnatomy:birnlex_2575"} [Term] id: UBERON:0002834 @@ -82774,6 +83287,7 @@ xref: FMA:6005 ! Cervical spinal ganglion xref: NIF_GrossAnatomy:birnlex_2599 ! Cervical dorsal root ganglion is_a: UBERON:0000044 ! dorsal root ganglion xref: SCTID:278325008 ! Cervical spinal ganglion +xref: UMLS:C0457466 {source="NIF_GrossAnatomy:birnlex_2599"} [Term] id: UBERON:0002835 @@ -82794,6 +83308,7 @@ is_a: UBERON:0000961 ! thoracic ganglion intersection_of: UBERON:0000044 ! dorsal root ganglion intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk xref: SCTID:278326009 ! Thoracic spinal ganglion +xref: UMLS:C0457467 {source="NIF_GrossAnatomy:birnlex_2600"} [Term] id: UBERON:0002836 @@ -82805,6 +83320,7 @@ xref: FMA:6007 ! Lumbar spinal ganglion xref: NIF_GrossAnatomy:birnlex_2601 ! Lumbar dorsal root ganglion is_a: UBERON:0000044 ! dorsal root ganglion xref: SCTID:278327000 ! Lumbar spinal ganglion +xref: UMLS:C0457468 {source="NIF_GrossAnatomy:birnlex_2601"} [Term] id: UBERON:0002837 @@ -82815,6 +83331,7 @@ xref: FMA:6008 ! Sacral spinal ganglion xref: NIF_GrossAnatomy:birnlex_2602 ! Sacral dorsal root ganglion is_a: UBERON:0000044 ! dorsal root ganglion xref: SCTID:278328005 ! Sacral spinal ganglion +xref: UMLS:C0457469 {source="NIF_GrossAnatomy:birnlex_2602"} [Term] id: UBERON:0002838 @@ -82826,6 +83343,7 @@ xref: FMA:6010 ! First cervical spinal ganglion xref: NIF_GrossAnatomy:birnlex_2603 ! First cervical dorsal root ganglion xref: EMAPA:25144 ! C1 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002834 ! cervical dorsal root ganglion +xref: UMLS:C0501468 {source="NIF_GrossAnatomy:birnlex_2603"} [Term] id: UBERON:0002839 @@ -82837,6 +83355,7 @@ xref: FMA:6315 ! Second cervical spinal ganglion xref: NIF_GrossAnatomy:birnlex_2604 ! Second cervical dorsal root ganglion xref: EMAPA:25155 ! C2 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002834 ! cervical dorsal root ganglion +xref: UMLS:C0501693 {source="NIF_GrossAnatomy:birnlex_2604"} [Term] id: UBERON:0002840 @@ -82848,6 +83367,7 @@ xref: FMA:6316 ! Third cervical spinal ganglion xref: NIF_GrossAnatomy:birnlex_2605 ! Third cervical dorsal root ganglion xref: EMAPA:25156 ! C3 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002834 ! cervical dorsal root ganglion +xref: UMLS:C0501694 {source="NIF_GrossAnatomy:birnlex_2605"} [Term] id: UBERON:0002841 @@ -82859,6 +83379,7 @@ xref: FMA:6317 ! Fourth cervical spinal ganglion xref: NIF_GrossAnatomy:birnlex_2606 ! Fourth cervical dorsal root ganglion xref: EMAPA:25157 ! C4 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002834 ! cervical dorsal root ganglion +xref: UMLS:C0501695 {source="NIF_GrossAnatomy:birnlex_2606"} [Term] id: UBERON:0002842 @@ -82870,6 +83391,7 @@ xref: FMA:6318 ! Fifth cervical spinal ganglion xref: NIF_GrossAnatomy:birnlex_2607 ! Fifth cervical dorsal root ganglion xref: EMAPA:25158 ! C5 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002834 ! cervical dorsal root ganglion +xref: UMLS:C0501696 {source="NIF_GrossAnatomy:birnlex_2607"} [Term] id: UBERON:0007711 @@ -82892,6 +83414,7 @@ xref: FMA:6360 ! Seventh cervical spinal ganglion xref: NIF_GrossAnatomy:birnlex_2609 ! Seventh cervical dorsal root ganglion xref: EMAPA:25160 ! C7 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002834 ! cervical dorsal root ganglion +xref: UMLS:C0501737 {source="NIF_GrossAnatomy:birnlex_2609"} [Term] id: UBERON:0002844 @@ -82902,6 +83425,7 @@ synonym: "eighth cervical spinal ganglion" EXACT [FMA:6361] xref: FMA:6361 ! Eighth cervical spinal ganglion xref: NIF_GrossAnatomy:birnlex_2610 ! Eighth cervical dorsal root ganglion is_a: UBERON:0002834 ! cervical dorsal root ganglion +xref: UMLS:C0501738 {source="NIF_GrossAnatomy:birnlex_2610"} [Term] id: UBERON:0002845 @@ -82913,6 +83437,7 @@ xref: FMA:6321 ! First thoracic spinal ganglion xref: NIF_GrossAnatomy:birnlex_2611 ! First thoracic dorsal root ganglion xref: EMAPA:25174 ! T1 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002835 ! thoracic dorsal root ganglion +xref: UMLS:C0501699 {source="NIF_GrossAnatomy:birnlex_2611"} [Term] id: UBERON:0002846 @@ -82924,6 +83449,7 @@ xref: FMA:6322 ! Second thoracic spinal ganglion xref: NIF_GrossAnatomy:birnlex_2612 ! Second thoracic dorsal root ganglion xref: EMAPA:25175 ! T2 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002835 ! thoracic dorsal root ganglion +xref: UMLS:C0501700 {source="NIF_GrossAnatomy:birnlex_2612"} [Term] id: UBERON:0002847 @@ -82935,6 +83461,7 @@ xref: FMA:6323 ! Third thoracic spinal ganglion xref: NIF_GrossAnatomy:birnlex_2613 ! Third thoracic dorsal root ganglion xref: EMAPA:25176 ! T3 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002835 ! thoracic dorsal root ganglion +xref: UMLS:C0501701 {source="NIF_GrossAnatomy:birnlex_2613"} [Term] id: UBERON:0007712 @@ -82947,6 +83474,7 @@ xref: FMA:6324 ! fourth thoracic spinal ganglion xref: NIF_GrossAnatomy:birnlex_2614 ! Forth thoracic dorsal root ganglion xref: EMAPA:25177 ! T4 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002835 {source="FMA"} ! thoracic dorsal root ganglion +xref: UMLS:C0501702 {source="NIF_GrossAnatomy:birnlex_2614"} [Term] id: UBERON:0002848 @@ -82958,6 +83486,7 @@ xref: FMA:6325 ! Fifth thoracic spinal ganglion xref: NIF_GrossAnatomy:birnlex_2615 ! Fifth thoracic dorsal root ganglion xref: EMAPA:25179 ! T5 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002835 ! thoracic dorsal root ganglion +xref: UMLS:C0501703 {source="NIF_GrossAnatomy:birnlex_2615"} [Term] id: UBERON:0002849 @@ -82969,6 +83498,7 @@ xref: FMA:6326 ! Sixth thoracic spinal ganglion xref: NIF_GrossAnatomy:birnlex_2616 ! Sixth thoracic dorsal root ganglion xref: EMAPA:25178 ! T6 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002835 ! thoracic dorsal root ganglion +xref: UMLS:C0501704 {source="NIF_GrossAnatomy:birnlex_2616"} [Term] id: UBERON:0002850 @@ -82980,6 +83510,7 @@ xref: FMA:6327 ! Seventh thoracic spinal ganglion xref: NIF_GrossAnatomy:birnlex_2617 ! Seventh thoracic dorsal root ganglion xref: EMAPA:25180 ! T7 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002835 ! thoracic dorsal root ganglion +xref: UMLS:C0501705 {source="NIF_GrossAnatomy:birnlex_2617"} [Term] id: UBERON:0002851 @@ -82991,6 +83522,7 @@ xref: FMA:6328 ! Eighth thoracic spinal ganglion xref: NIF_GrossAnatomy:birnlex_2618 ! Eighth thoracic dorsal root ganglion xref: EMAPA:25181 ! T8 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002835 ! thoracic dorsal root ganglion +xref: UMLS:C0501706 {source="NIF_GrossAnatomy:birnlex_2618"} [Term] id: UBERON:0002852 @@ -83002,6 +83534,7 @@ xref: FMA:6329 ! Ninth thoracic spinal ganglion xref: NIF_GrossAnatomy:birnlex_2619 ! Ninth thoracic dorsal root ganglion xref: EMAPA:25182 ! T9 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002835 ! thoracic dorsal root ganglion +xref: UMLS:C0501707 {source="NIF_GrossAnatomy:birnlex_2619"} [Term] id: UBERON:0002853 @@ -83013,6 +83546,7 @@ xref: FMA:6330 ! Tenth thoracic spinal ganglion xref: NIF_GrossAnatomy:birnlex_2620 ! Tenth thoracic dorsal root ganglion xref: EMAPA:25183 ! T10 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002835 ! thoracic dorsal root ganglion +xref: UMLS:C0501708 {source="NIF_GrossAnatomy:birnlex_2620"} [Term] id: UBERON:0002854 @@ -83024,6 +83558,7 @@ xref: FMA:6331 ! Eleventh thoracic spinal ganglion xref: NIF_GrossAnatomy:birnlex_2621 ! Eleventh thoracic dorsal root ganglion xref: EMAPA:25184 ! T11 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002835 ! thoracic dorsal root ganglion +xref: UMLS:C0501709 {source="NIF_GrossAnatomy:birnlex_2621"} [Term] id: UBERON:0002855 @@ -83035,6 +83570,7 @@ xref: FMA:6332 ! Twelfth thoracic spinal ganglion xref: NIF_GrossAnatomy:birnlex_2622 ! Twelfth thoracic dorsal root ganglion xref: EMAPA:25185 ! T12 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002835 ! thoracic dorsal root ganglion +xref: UMLS:C0501710 {source="NIF_GrossAnatomy:birnlex_2622"} [Term] id: UBERON:0002857 @@ -83046,6 +83582,7 @@ xref: FMA:6335 ! First lumbar spinal ganglion xref: NIF_GrossAnatomy:birnlex_2624 ! First lumbar dorsal root ganglion xref: EMAPA:25164 ! L1 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002836 ! lumbar dorsal root ganglion +xref: UMLS:C0501713 {source="NIF_GrossAnatomy:birnlex_2624"} [Term] id: UBERON:0002856 @@ -83057,6 +83594,7 @@ xref: FMA:6336 ! Second lumbar spinal ganglion xref: NIF_GrossAnatomy:birnlex_2623 ! Second lumbar dorsal root ganglion xref: EMAPA:25165 ! L2 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002836 ! lumbar dorsal root ganglion +xref: UMLS:C0501714 {source="NIF_GrossAnatomy:birnlex_2623"} [Term] id: UBERON:0002858 @@ -83068,6 +83606,7 @@ xref: EMAPA:25166 ! L3 of dorsal root ganglion of ganglion of spinal xref: FMA:6337 ! Third lumbar spinal ganglion xref: NIF_GrossAnatomy:birnlex_2625 ! Third lumbar dorsal root ganglion is_a: UBERON:0002836 ! lumbar dorsal root ganglion +xref: UMLS:C0501715 {source="NIF_GrossAnatomy:birnlex_2625"} [Term] id: UBERON:0003943 @@ -83084,6 +83623,7 @@ xref: EMAPA:25167 ! L4 of dorsal root ganglion of ganglion of spinal xref: FMA:6338 ! fourth lumbar spinal ganglion xref: NIF_GrossAnatomy:birnlex_2626 ! Forth lumbar dorsal root ganglion is_a: UBERON:0002836 {source="FMA"} ! lumbar dorsal root ganglion +xref: UMLS:C0501716 {source="NIF_GrossAnatomy:birnlex_2626"} [Term] id: UBERON:0002859 @@ -83099,6 +83639,7 @@ xref: FMA:6339 ! Fifth lumbar spinal ganglion xref: NIF_GrossAnatomy:birnlex_2627 ! Fifth lumbar dorsal root ganglion xref: EMAPA:25168 ! L5 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002836 ! lumbar dorsal root ganglion +xref: UMLS:C0501717 {source="NIF_GrossAnatomy:birnlex_2627"} [Term] id: UBERON:0002860 @@ -83110,6 +83651,7 @@ xref: FMA:6342 ! First sacral spinal ganglion xref: NIF_GrossAnatomy:birnlex_2628 ! First sacral dorsal root ganglion xref: EMAPA:25170 ! S1 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002837 ! sacral dorsal root ganglion +xref: UMLS:C0501720 {source="NIF_GrossAnatomy:birnlex_2628"} [Term] id: UBERON:0002861 @@ -83121,6 +83663,7 @@ xref: FMA:6343 ! Second sacral spinal ganglion xref: NIF_GrossAnatomy:birnlex_2629 ! Second sacral dorsal root ganglion xref: EMAPA:25171 ! S2 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002837 ! sacral dorsal root ganglion +xref: UMLS:C0501721 {source="NIF_GrossAnatomy:birnlex_2629"} [Term] id: UBERON:0002862 @@ -83132,6 +83675,7 @@ xref: FMA:6344 ! Third sacral spinal ganglion xref: NIF_GrossAnatomy:birnlex_2630 ! Third sacral dorsal root ganglion xref: EMAPA:25172 ! S3 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002837 ! sacral dorsal root ganglion +xref: UMLS:C0501722 {source="NIF_GrossAnatomy:birnlex_2630"} [Term] id: UBERON:0007713 @@ -83143,6 +83687,7 @@ xref: FMA:6345 ! fourth sacral spinal ganglion xref: NIF_GrossAnatomy:birnlex_2631 ! Forth sacral dorsal root ganglion xref: EMAPA:25173 ! S4 of dorsal root ganglion of ganglion of spinal is_a: UBERON:0002837 {source="FMA"} ! sacral dorsal root ganglion +xref: UMLS:C0501723 {source="NIF_GrossAnatomy:birnlex_2631"} [Term] id: UBERON:0002863 @@ -83153,6 +83698,7 @@ synonym: "fifth sacral spinal ganglion" EXACT [FMA:6346] xref: FMA:6346 ! Fifth sacral spinal ganglion xref: NIF_GrossAnatomy:birnlex_2632 ! Fifth sacral dorsal root ganglion is_a: UBERON:0002837 ! sacral dorsal root ganglion +xref: UMLS:C0501724 {source="NIF_GrossAnatomy:birnlex_2632"} [Term] id: UBERON:0002864 @@ -83181,6 +83727,7 @@ xref: SCTID:15575006 ! Entire accessory cuneate nucleus synonym: "nucleus cuneatus accessorius" RELATED LATIN [Wikipedia:Accessory_cuneate_nucleus] xref: http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata +xref: UMLS:C0152397 {source="NIF_GrossAnatomy:birnlex_2634"} [Term] id: UBERON:0002866 @@ -83202,6 +83749,7 @@ relationship: spatially_disjoint_from UBERON:0007633 {source="ABA"} ! nucleus of relationship: spatially_disjoint_from UBERON:0002126 {source="ABA"} ! solitary tract nuclear complex relationship: spatially_disjoint_from UBERON:0002873 {source="ABA"} ! interpolar part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0002591 {source="ABA"} ! oral part of spinal trigeminal nucleus +xref: UMLS:C0040994 {source="NIF_GrossAnatomy:birnlex_2637"} [Term] id: UBERON:0011777 @@ -83229,6 +83777,7 @@ synonym: "kolloker-fuse nucleus" EXACT [NIF_GrossAnatomy:birnlex_2641] xref: FMA:72598 ! Diffuse reticular nucleus xref: NIF_GrossAnatomy:birnlex_2641 ! Diffuse reticular nucleus is_a: UBERON:0002308 ! nucleus of brain +xref: UMLS:C0175530 {source="NIF_GrossAnatomy:birnlex_2641"} [Term] id: UBERON:0002871 @@ -83269,6 +83818,7 @@ synonym: "nucleus nervi hypoglossi" RELATED LATIN [Wikipedia:Hypoglossal_nucleus xref: http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png xref: UMLS:C0228802 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001358"} ! Vertebrata +xref: UMLS:C0228802 {source="NIF_GrossAnatomy:birnlex_2644"} [Term] id: UBERON:0004133 ! salivatory nucleus @@ -83315,6 +83865,7 @@ relationship: immediate_transformation_of UBERON:0010124 {evidence="definitional synonym: "nucleus salivatorius inferior" RELATED LATIN [Wikipedia:Inferior_salivatory_nucleus] xref: http://upload.wikimedia.org/wikipedia/commons/a/a0/Gray843.png relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata +xref: UMLS:C0175534 {source="NIF_GrossAnatomy:birnlex_2645"} [Term] id: UBERON:0002873 @@ -83331,6 +83882,7 @@ relationship: spatially_disjoint_from UBERON:0007633 {source="ABA"} ! nucleus of relationship: spatially_disjoint_from UBERON:0002126 {source="ABA"} ! solitary tract nuclear complex relationship: spatially_disjoint_from UBERON:0002866 {source="ABA"} ! caudal part of spinal trigeminal nucleus relationship: spatially_disjoint_from UBERON:0002591 {source="ABA"} ! oral part of spinal trigeminal nucleus +xref: UMLS:C0175418 {source="NIF_GrossAnatomy:birnlex_2646"} [Term] id: UBERON:0002874 @@ -83339,6 +83891,7 @@ xref: FMA:72604 ! Lateral pericuneate nucleus xref: NIF_GrossAnatomy:birnlex_2647 ! Lateral pericuneate nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata +xref: UMLS:C0262271 {source="NIF_GrossAnatomy:birnlex_2647"} [Term] id: UBERON:0002875 @@ -83347,6 +83900,7 @@ xref: FMA:72605 ! Medial pericuneate nucleus xref: NIF_GrossAnatomy:birnlex_2648 ! Medial pericuneate nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata +xref: UMLS:C0262288 {source="NIF_GrossAnatomy:birnlex_2648"} [Term] id: UBERON:0002877 @@ -83385,6 +83939,10 @@ xref: EV:0100291 ! nucleus intercalatus is_a: UBERON:0002308 ! nucleus of brain xref: SCTID:369077004 ! Entire nucleus intercalatus relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata +xref: UMLS:C0152398 {source="NIF_GrossAnatomy:birnlex_2651"} +xref: UMLS:C1289504 {source="NIF_GrossAnatomy:birnlex_2651"} +xref: UMLS:C0152398 {source="NIF_GrossAnatomy:birnlex_2654"} +xref: UMLS:C1289504 {source="NIF_GrossAnatomy:birnlex_2654"} [Term] id: UBERON:0002879 @@ -83393,6 +83951,7 @@ xref: FMA:72600 ! Peritrigeminal nucleus xref: NIF_GrossAnatomy:birnlex_2655 ! Peritrigeminal nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata +xref: UMLS:C0262307 {source="NIF_GrossAnatomy:birnlex_2655"} [Term] id: UBERON:0002880 @@ -83403,6 +83962,7 @@ xref: FMA:72608 ! Pontobulbar nucleus xref: NIF_GrossAnatomy:birnlex_2656 ! Pontobulbar nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata +xref: UMLS:C0175532 {source="NIF_GrossAnatomy:birnlex_2656"} [Term] id: UBERON:0002882 @@ -83413,6 +83973,7 @@ xref: EV:0100282 ! supraspinal nucleus xref: BM:SSp ! supraspinal nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata +xref: UMLS:C0175538 {source="NIF_GrossAnatomy:birnlex_2658"} [Term] id: UBERON:0002883 @@ -83429,6 +83990,7 @@ xref: EV:0100191 ! central amygdaloid nucleus xref: BM:Tel-Am-ACE ! central nucleus of amygdala is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001876 ! amygdala +xref: UMLS:C0175219 {source="NIF_GrossAnatomy:birnlex_2682"} [Term] id: UBERON:0002884 @@ -83446,6 +84008,7 @@ xref: MA:0002925 ! intercalated amygdaloid nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001876 ! amygdala def: "Discrete clusters of cells intercalated among the major amygdaloid nuclei. They stain darkly in Nissl stains and have been identified in all mammals. The main groups lie between the lateral-basolateral nuclear coplex and the central and medial nuclei. Additional cell groups have been described by some in other locations (Millhouse, O. E. The intercalated cells of the amygdala. J Comp Neurol 247: 246-271, 1986)., Groups of cells located between the lateral basolateral amygaloid nuclear complex and the central nucleus of the amygdala. They stain darkly in Nissl stains and have been identified in all mammals. (Millhouse, O. E. The intercalated cells of the amygdala. J Comp Neurol 247: 246-271, 1986)" [NIF_GrossAnatomy:birnlex_2683] +xref: UMLS:C0262259 {source="NIF_GrossAnatomy:birnlex_2683"} [Term] id: UBERON:0002885 @@ -83458,6 +84021,7 @@ xref: NIF_GrossAnatomy:birnlex_2686 ! Accessory basal amygdaloid nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001876 ! amygdala relationship: part_of UBERON:0006107 {source="NIFSTD"} ! basolateral amygdaloid nuclear complex +xref: UMLS:C0175223 {source="NIF_GrossAnatomy:birnlex_2686"} [Term] id: UBERON:0002886 @@ -83474,6 +84038,7 @@ xref: ABA:LA ! Lateral amygdalar nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001876 ! amygdala relationship: part_of UBERON:0006107 {source="NIFSTD"} ! basolateral amygdaloid nuclear complex +xref: UMLS:C0175221 {source="NIF_GrossAnatomy:birnlex_2687"} [Term] id: UBERON:0006107 @@ -83496,6 +84061,7 @@ xref: NIF_GrossAnatomy:birnlex_2679 ! Basolateral amygdaloid nuclear complex is_a: UBERON:0007245 ! nuclear complex of neuraxis relationship: part_of UBERON:0001876 ! amygdala relationship: spatially_disjoint_from UBERON:0002023 {source="ABA"} ! claustrum +xref: UMLS:C0175220 {source="NIF_GrossAnatomy:birnlex_2679"} [Term] id: UBERON:0002887 ! basal amygdaloid nucleus @@ -83514,6 +84080,7 @@ relationship: part_of UBERON:0001876 ! amygdala relationship: spatially_disjoint_from UBERON:0002023 {source="ABA"} ! claustrum synonym: "nucleus amygdalae basalis lateralis" EXACT LATIN [FMA:TA, FMA:68855] relationship: part_of UBERON:0006107 {source="NIFSTD"} ! basolateral amygdaloid nuclear complex +xref: UMLS:C0175222 {source="NIF_GrossAnatomy:birnlex_2692"} [Term] id: UBERON:0002888 @@ -83526,6 +84093,7 @@ xref: FMA:68857 ! Lateral part of basal amygdaloid nucleus xref: NIF_GrossAnatomy:birnlex_2695 ! Lateral part of basal amygdaloid nucleus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0002887 ! basal amygdaloid nucleus +xref: UMLS:C0694601 {source="NIF_GrossAnatomy:birnlex_2695"} [Term] id: UBERON:0002889 @@ -83541,6 +84109,7 @@ xref: ABA:BMA ! Basomedial amygdalar nucleus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0002887 ! basal amygdaloid nucleus synonym: "nucleus amygdalae basalis medialis" EXACT LATIN [FMA:TA, FMA:68858] +xref: UMLS:C1134422 {source="NIF_GrossAnatomy:birnlex_2696"} [Term] id: UBERON:0002890 @@ -83555,6 +84124,7 @@ xref: BM:Tel-Am-AAA ! anterior amygdaloid area is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0001876 ! amygdala relationship: part_of UBERON:0006108 {source="NIFSTD"} ! corticomedial nuclear complex +xref: UMLS:C0175215 {source="NIF_GrossAnatomy:birnlex_2698"} [Term] id: UBERON:0002891 @@ -83570,6 +84140,7 @@ xref: EV:0100193 ! cortical amygdaloid nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001876 ! amygdala relationship: part_of UBERON:0006108 {source="NIFSTD"} ! corticomedial nuclear complex +xref: UMLS:C0175216 {source="NIF_GrossAnatomy:birnlex_2700"} [Term] id: UBERON:0002892 @@ -83586,6 +84157,7 @@ xref: BM:Tel-Am-AME ! medial nucleus of amygdala is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001876 ! amygdala relationship: part_of UBERON:0006108 {source="NIFSTD"} ! corticomedial nuclear complex +xref: UMLS:C0175217 {source="NIF_GrossAnatomy:birnlex_2701"} [Term] id: UBERON:0013201 ! olfactory pathway @@ -83637,6 +84209,7 @@ property_value: homology_notes " (In mammals) Odorant detection is mediated by m property_value: external_definition "That portion of the cerebral cortex that, with the palaeocortex, develops in association with the olfactory system, and which is phylogenetically older than the neocortex and lacks its layered structure. The embryonic archaeocortex corresponds to the cortex of the dentate gyrus and hippocampus in mature mammals[BTO:0001446]." xsd:string {source="BTO:0001446"} relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000325"} ! Vertebrata property_value: external_definition "The olfactory cortex is involved in the perception of smell. It receives input from the olfactory bulb and is responsible for the identification of odors[GO][GO:0021989]." xsd:string {source="GO:0021989"} +xref: UMLS:C0162434 {source="NIF_GrossAnatomy:birnlex_2707"} [Term] id: UBERON:0002264 @@ -83683,6 +84256,7 @@ property_value: external_definition "Part of the rostral part of the cerebrum wh xref: UMLS:C0028936 relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000033"} ! Vertebrata xref: CALOHA:TS-0702 +xref: UMLS:C0028936 {source="NIF_GrossAnatomy:birnlex_1137"} [Term] id: UBERON:0009951 @@ -83756,6 +84330,7 @@ xref: ncithesaurus:Trigonum_Olfactorium ! Trigonum Olfactorium xref: SCTID:369102007 ! Entire olfactory trigone xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png xref: UMLS:C0228279 +xref: UMLS:C0228279 {source="NIF_GrossAnatomy:birnlex_4042"} [Term] id: UBERON:0005387 @@ -83801,6 +84376,7 @@ xref: ncithesaurus:Entorhinal_Cortex ! entorhinal cortex xref: http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray-Brodman-Entorhinal_Cortex_EC_.png xref: UMLS:C0175196 subset: efo_slim +xref: UMLS:C0175196 {source="NIF_GrossAnatomy:birnlex_1508"} [Term] id: UBERON:0007224 @@ -83838,6 +84414,7 @@ synonym: "telo-diencephalic fissure" EXACT [FMA:83726] xref: FMA:83726 ! Telodiencephalic fissure xref: NIF_GrossAnatomy:birnlex_4001 ! Telodiencephalic fissure is_a: UBERON:0000464 ! anatomical space +xref: UMLS:C0262340 {source="NIF_GrossAnatomy:birnlex_4001"} [Term] id: UBERON:0002897 @@ -83850,6 +84427,7 @@ xref: ncithesaurus:Lamina_Terminalis_Cistern ! Lamina Terminalis Cistern is_a: UBERON:0004050 ! subarachnoid cistern xref: SCTID:12692002 ! Entire cisterna lamina terminalis xref: UMLS:C0228153 +xref: UMLS:C0228153 {source="NIF_GrossAnatomy:birnlex_4002"} [Term] id: UBERON:0002898 @@ -83869,6 +84447,7 @@ is_a: UBERON:0004050 ! subarachnoid cistern xref: SCTID:47947006 ! Entire cisterna chiasmatica synonym: "cisterna chiasmatica" RELATED LATIN [Wikipedia:Chiasmatic_cistern] xref: UMLS:C0228152 +xref: UMLS:C0228152 {source="NIF_GrossAnatomy:birnlex_4003"} [Term] id: UBERON:0002899 @@ -83891,6 +84470,7 @@ synonym: "sulcus hippocampalis" RELATED LATIN [Wikipedia:Hippocampal_sulcus] synonym: "sulcus hippocampi" RELATED LATIN [Wikipedia:Hippocampal_sulcus] xref: http://upload.wikimedia.org/wikipedia/commons/3/31/Hippocampus_%28brain%29.jpg xref: UMLS:C0228251 +xref: UMLS:C0228251 {source="NIF_GrossAnatomy:birnlex_4004"} [Term] id: UBERON:0002900 @@ -83900,6 +84480,7 @@ xref: FMA:83786 ! Transverse occipital sulcus xref: NIF_GrossAnatomy:birnlex_4013 ! Transverse occipital sulcus xref: BTO:0003786 ! transverse occipital sulcus is_a: UBERON:0000093 ! sulcus +xref: UMLS:C0262348 {source="NIF_GrossAnatomy:birnlex_4013"} [Term] id: UBERON:0002901 @@ -83911,6 +84492,7 @@ synonym: "sulcus calcarinus posterior" EXACT [NIF_GrossAnatomy:birnlex_4015] xref: FMA:83787 ! Posterior calcarine sulcus xref: NIF_GrossAnatomy:birnlex_4015 ! Posterior calcarine sulcus is_a: UBERON:0000093 ! sulcus +xref: UMLS:C0262311 {source="NIF_GrossAnatomy:birnlex_4015"} [Term] id: UBERON:0002903 @@ -83924,6 +84506,7 @@ xref: ncithesaurus:Lunate_Sulcus ! Lunate Sulcus xref: BM:Tel-Cx-LUS ! lunate sulcus is_a: UBERON:0000093 ! sulcus xref: UMLS:C0262278 +xref: UMLS:C0262278 {source="NIF_GrossAnatomy:birnlex_4017"} [Term] id: UBERON:0002904 @@ -83940,6 +84523,8 @@ is_a: UBERON:0000093 ! sulcus xref: SCTID:369219003 ! Entire lateral occipital sulcus xref: http://upload.wikimedia.org/wikipedia/commons/2/2c/Gray727_lateral-occipital_sulcus.svg xref: UMLS:C0228229 +xref: UMLS:C0228229 {source="NIF_GrossAnatomy:birnlex_4018"} +xref: UMLS:C1289641 {source="NIF_GrossAnatomy:birnlex_4018"} [Term] id: UBERON:0002905 @@ -83948,6 +84533,7 @@ synonym: "sulcus intralingualis" EXACT [NIF_GrossAnatomy:birnlex_4019] xref: FMA:83789 ! Intralingual sulcus xref: NIF_GrossAnatomy:birnlex_4019 ! Intralingual sulcus is_a: UBERON:0000093 ! sulcus +xref: UMLS:C0694595 {source="NIF_GrossAnatomy:birnlex_4019"} [Term] id: UBERON:0002906 @@ -83960,6 +84546,7 @@ synonym: "sulcus annectans" EXACT [NIF_GrossAnatomy:birnlex_4023] xref: FMA:75758 ! Anterior occipital sulcus xref: NIF_GrossAnatomy:birnlex_4023 ! Anterior occipital sulcus is_a: UBERON:0000093 ! sulcus +xref: UMLS:C0262194 {source="NIF_GrossAnatomy:birnlex_4023"} [Term] id: UBERON:0002907 @@ -83970,6 +84557,7 @@ xref: FMA:83775 ! Superior postcentral sulcus xref: NIF_GrossAnatomy:birnlex_4025 ! Superior postcentral sulcus is_a: UBERON:0000093 ! sulcus is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0262337 {source="NIF_GrossAnatomy:birnlex_4025"} [Term] id: UBERON:0002908 @@ -83983,6 +84571,8 @@ xref: BM:Tel-Cx-SPS ! subparietal sulcus is_a: UBERON:0000093 ! sulcus xref: SCTID:279352008 ! Entire subparietal sulcus is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0228216 {source="NIF_GrossAnatomy:birnlex_4026"} +xref: UMLS:C1281079 {source="NIF_GrossAnatomy:birnlex_4026"} [Term] id: UBERON:0002909 @@ -83992,6 +84582,7 @@ xref: FMA:83778 ! Posterior subcentral sulcus xref: NIF_GrossAnatomy:birnlex_4027 ! Posterior subcentral sulcus is_a: UBERON:0000093 ! sulcus is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0262318 {source="NIF_GrossAnatomy:birnlex_4027"} [Term] id: UBERON:0002910 @@ -84005,6 +84596,7 @@ xref: NIF_GrossAnatomy:birnlex_4028 ! Posterior ascending limb of lateral sulcus is_a: UBERON:0000464 ! anatomical space synonym: "ramus posterior sulci lateralis cerebri" EXACT LATIN [FMA:TA, FMA:83761] is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0262310 {source="NIF_GrossAnatomy:birnlex_4028"} [Term] id: UBERON:0002912 @@ -84024,6 +84616,7 @@ xref: SCTID:279351001 ! Marginal sulcus synonym: "ramus marginalis; sulcus marginalis" RELATED LATIN [Wikipedia:Marginal_sulcus] xref: http://upload.wikimedia.org/wikipedia/commons/d/d0/Gray727_marginal_sulcus.svg is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0259792 {source="NIF_GrossAnatomy:birnlex_4030"} [Term] id: UBERON:0002913 @@ -84049,6 +84642,8 @@ synonym: "sulcus intraparietalis" RELATED LATIN [Wikipedia:Intraparietal_sulcus] xref: http://upload.wikimedia.org/wikipedia/commons/2/2a/Gray726_intraparietal_sulcus.svg xref: UMLS:C0228213 is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0228213 {source="NIF_GrossAnatomy:birnlex_4031"} +xref: UMLS:C1281069 {source="NIF_GrossAnatomy:birnlex_4031"} [Term] id: UBERON:0002914 @@ -84058,6 +84653,7 @@ xref: FMA:83776 ! Inferior postcentral sulcus xref: NIF_GrossAnatomy:birnlex_4032 ! Inferior postcentral sulcus is_a: UBERON:0000093 ! sulcus is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0262256 {source="NIF_GrossAnatomy:birnlex_4032"} [Term] id: UBERON:0002915 @@ -84080,6 +84676,8 @@ synonym: "sulcus postcentralis" RELATED LATIN [Wikipedia:Postcentral_sulcus] xref: http://upload.wikimedia.org/wikipedia/commons/6/6c/Postcentral_sulcus.png xref: UMLS:C0228212 is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0228212 {source="NIF_GrossAnatomy:birnlex_4033"} +xref: UMLS:C1281070 {source="NIF_GrossAnatomy:birnlex_4033"} [Term] id: UBERON:0002916 @@ -84106,6 +84704,8 @@ is_a: UBERON:0000093 ! sulcus xref: SCTID:279340001 ! Entire central sulcus synonym: "sulcus centralis cerebri" RELATED LATIN [Wikipedia:Central_sulcus] xref: http://upload.wikimedia.org/wikipedia/commons/8/8e/Gray726_central_sulcus.svg +xref: UMLS:C0228188 {source="NIF_GrossAnatomy:birnlex_4035"} +xref: UMLS:C1281071 {source="NIF_GrossAnatomy:birnlex_4035"} [Term] id: UBERON:0002917 @@ -84129,6 +84729,7 @@ synonym: "sulcus parolfactorius anterior" EXACT [NIF_GrossAnatomy:birnlex_4039] xref: FMA:83744 ! Anterior parolfactory sulcus xref: NIF_GrossAnatomy:birnlex_4039 ! Anterior parolfactory sulcus is_a: UBERON:0000093 ! sulcus +xref: UMLS:C0262196 {source="NIF_GrossAnatomy:birnlex_4039"} [Term] id: UBERON:0002920 @@ -84145,6 +84746,7 @@ is_a: UBERON:0000093 ! sulcus xref: SCTID:279349000 ! Callosal sulcus synonym: "sulcus corporis callosi" RELATED LATIN [Wikipedia:Callosal_sulcus] xref: http://upload.wikimedia.org/wikipedia/commons/4/43/Gray727_sulcus_of_the_corpus_callosum.svg +xref: UMLS:C0262204 {source="NIF_GrossAnatomy:birnlex_4040"} [Term] id: UBERON:0002921 @@ -84173,6 +84775,7 @@ is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000315 ! subarachnoid space xref: SCTID:369225004 ! Entire longitudinal cerebral fissure xref: UMLS:C0228186 +xref: UMLS:C0228186 {source="NIF_GrossAnatomy:birnlex_4041"} [Term] id: UBERON:0002923 @@ -84180,6 +84783,7 @@ name: posterior parolfactory sulcus xref: FMA:83745 ! Posterior parolfactory sulcus xref: NIF_GrossAnatomy:birnlex_4043 ! Posterior parolfactory sulcus is_a: UBERON:0000093 ! sulcus +xref: UMLS:C0262316 {source="NIF_GrossAnatomy:birnlex_4043"} [Term] id: UBERON:0002924 @@ -84198,6 +84802,8 @@ is_a: UBERON:0001785 {source="ZFA"} ! cranial nerve xref: TAO:0001356 ! terminal nerve property_value: external_definition "The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest. Whitlock 2004. Also see Grens, Greenwood and Fernald, Brain Behav Evol 2005; 66(1):1-9.[TAO]" xsd:string {ontology="TAO", external_class="TAO:0001356", date_retrieved="2012-08-14", source="ZFIN:curator"} subset: efo_slim +xref: UMLS:C0262346 {source="NIF_GrossAnatomy:birnlex_4044"} +xref: UMLS:C1185749 {source="NIF_GrossAnatomy:birnlex_4044"} [Term] id: UBERON:0002304 @@ -84256,6 +84862,7 @@ relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum relationship: part_of UBERON:0002316 ! white matter of neuraxis synonym: "fibrae tectopontinae" EXACT LATIN [FMA:TA, FMA:72505] xref: SCTID:3301002 ! Tectopontine fibers +xref: UMLS:C0228403 {source="NIF_GrossAnatomy:birnlex_701"} [Term] id: UBERON:0002931 @@ -84264,6 +84871,7 @@ xref: FMA:61877 ! Dorsal septal nucleus xref: NIF_GrossAnatomy:birnlex_704 ! Dorsal septal nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002663 {source="NIFSTD"} ! septal nuclear complex +xref: UMLS:C0262226 {source="NIF_GrossAnatomy:birnlex_704"} [Term] id: UBERON:0002932 @@ -84279,6 +84887,7 @@ is_a: UBERON:0002316 ! white matter of neuraxis xref: SCTID:369019006 ! Entire trapezoid body synonym: "corpus trapezoideum" RELATED LATIN [Wikipedia:Trapezoid_body] xref: http://upload.wikimedia.org/wikipedia/commons/b/bb/Gray760.png +xref: UMLS:C0152379 {source="NIF_GrossAnatomy:birnlex_707"} [Term] id: UBERON:0002933 @@ -84292,6 +84901,7 @@ xref: ABA:BAC ! Bed nucleus of the anterior commissure xref: BM:Tel-ACN ! nucleus of anterior commissure is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002663 ! septal nuclear complex +xref: UMLS:C0262292 {source="NIF_GrossAnatomy:birnlex_712"} [Term] id: UBERON:0002647 @@ -84309,6 +84919,7 @@ xref: NIF_GrossAnatomy:birnlex_1262 ! Magnocellular part of medial dorsal nucleu is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0002739 {source="FMA"} ! medial dorsal nucleus synonym: "pars magnocellularis nuclei mediodorsalis thalami" EXACT LATIN [FMA:TA, FMA:62161] +xref: UMLS:C0228331 {source="NIF_GrossAnatomy:birnlex_1262"} [Term] id: UBERON:0002759 @@ -84332,6 +84943,7 @@ is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001927 ! medial geniculate body relationship: spatially_disjoint_from UBERON:0002758 {source="ABA"} ! dorsal nucleus of medial geniculate body relationship: spatially_disjoint_from UBERON:0002985 {source="ABA"} ! ventral nucleus of medial geniculate body +xref: UMLS:C0175296 {source="NIF_GrossAnatomy:birnlex_1612"} [Term] id: UBERON:0002935 @@ -84353,6 +84965,7 @@ xref: BM:Die-Th-VA-VAmc ! ventral anterior nucleus of thalamus, magnocellular di is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0002637 {source="FMA"} ! ventral anterior nucleus synonym: "pars magnocellularis nuclei ventralis anterior thalami" EXACT LATIN [FMA:TA, FMA:62192] +xref: UMLS:C0228335 {source="NIF_GrossAnatomy:birnlex_716"} [Term] id: UBERON:0002937 @@ -84366,6 +84979,7 @@ xref: FMA:62191 ! Parvicellular part of ventral anterior nucleus xref: NIF_GrossAnatomy:birnlex_722 ! Parvicellular part of ventral anterior nucleus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0002637 {source="FMA"} ! ventral anterior nucleus +xref: UMLS:C0228334 {source="NIF_GrossAnatomy:birnlex_722"} [Term] id: UBERON:0002936 @@ -84376,6 +84990,7 @@ xref: FMA:72431 ! Magnocellular part of red nucleus xref: NIF_GrossAnatomy:birnlex_720 ! Magnocellular part of red nucleus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0001947 ! red nucleus +xref: UMLS:C0175402 {source="NIF_GrossAnatomy:birnlex_720"} [Term] id: UBERON:0002938 @@ -84386,6 +85001,7 @@ xref: FMA:72430 ! Parvocellular part of red nucleus xref: NIF_GrossAnatomy:birnlex_725 ! Parvocellular part of red nucleus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0001947 ! red nucleus +xref: UMLS:C0175401 {source="NIF_GrossAnatomy:birnlex_725"} [Term] id: UBERON:0002939 @@ -84414,6 +85030,7 @@ xref: FMA:61966 ! Anterior column of fornix xref: NIF_GrossAnatomy:birnlex_731 ! Anterior column of fornix is_a: UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0000052 {source="NIFSTD"} ! fornix of brain +xref: UMLS:C0175236 {source="NIF_GrossAnatomy:birnlex_731"} [Term] id: UBERON:0002941 @@ -84424,6 +85041,7 @@ xref: NIF_GrossAnatomy:birnlex_732 ! Capsule of red nucleus is_a: UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0001947 ! red nucleus xref: SCTID:369245007 ! Entire capsule of red nucleus +xref: UMLS:C0152369 {source="NIF_GrossAnatomy:birnlex_732"} [Term] id: UBERON:0002781 @@ -84435,6 +85053,7 @@ xref: FMA:62206 ! Caudal part of ventral posterolateral nucleus xref: NIF_GrossAnatomy:birnlex_1681 ! Caudal part of ventral posterolateral nucleus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0002942 {source="NIFSTD"} ! ventral posterolateral nucleus +xref: UMLS:C0175287 {source="NIF_GrossAnatomy:birnlex_1681"} [Term] id: UBERON:0002942 @@ -84461,6 +85080,7 @@ relationship: spatially_disjoint_from UBERON:0002945 {source="ABA"} ! ventral po xref: SCTID:369171001 ! Entire ventral posterolateral nucleus of thalamus synonym: "nucleus ventralis posterolateralis thalami" RELATED LATIN [Wikipedia:Ventral_posterolateral_nucleus] xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png +xref: UMLS:C0228337 {source="NIF_GrossAnatomy:birnlex_737"} [Term] id: UBERON:0002943 @@ -84481,6 +85101,7 @@ xref: SCTID:279203007 ! Entire medial occipitotemporal gyrus synonym: "gyrus lingualis" RELATED LATIN [Wikipedia:Lingual_gyrus] xref: http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray727_lingual_gyrus.png is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0152308 {source="NIF_GrossAnatomy:birnlex_740"} [Term] id: UBERON:0007703 ! spinothalamic tract @@ -84503,6 +85124,7 @@ is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0001943 ! midbrain tegmentum relationship: part_of UBERON:0007703 ! spinothalamic tract xref: SCTID:369090006 ! Entire spinothalamic tract of midbrain +xref: UMLS:C0152376 {source="NIF_GrossAnatomy:birnlex_1150"} [Term] id: UBERON:0002798 @@ -84521,6 +85143,7 @@ is_a: UBERON:0007702 {source="FMA"} ! tract of brain relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum relationship: part_of UBERON:0007703 ! spinothalamic tract xref: SCTID:369026006 ! Entire spinothalamic tract of pons +xref: UMLS:C0152380 {source="NIF_GrossAnatomy:birnlex_1719"} [Term] id: UBERON:0002944 @@ -84538,6 +85161,7 @@ relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata relationship: has_function_in GO:0019233 {source="GO"} ! nociception relationship: part_of UBERON:0007703 ! spinothalamic tract xref: SCTID:360570003 ! Spinothalamic tract of medulla +xref: UMLS:C0037953 {source="NIF_GrossAnatomy:birnlex_741"} [Term] id: UBERON:0002945 @@ -84576,6 +85200,7 @@ relationship: spatially_disjoint_from UBERON:0002942 {source="ABA"} ! ventral po xref: SCTID:369172008 ! Entire ventral posteromedial nucleus of thalamus synonym: "nucleus ventralis posteromedialis thalami" RELATED LATIN [Wikipedia:Ventral_posteromedial_nucleus] xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png +xref: UMLS:C0752056 {source="NIF_GrossAnatomy:birnlex_743"} [Term] id: UBERON:0002946 @@ -84599,6 +85224,7 @@ is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0002021 ! occipital lobe xref: SCTID:279182006 ! Entire superior occipital gyrus is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0228230 {source="NIF_GrossAnatomy:birnlex_758"} [Term] id: UBERON:0002949 @@ -84617,6 +85243,7 @@ relationship: part_of UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0001896 ! medulla oblongata synonym: "tractus tectospinalis" RELATED LATIN [Wikipedia:Tectospinal_tract] xref: http://upload.wikimedia.org/wikipedia/commons/b/be/Gray670.png +xref: UMLS:C0228553 {source="NIF_GrossAnatomy:birnlex_759"} [Term] id: UBERON:0002950 @@ -84653,6 +85280,7 @@ synonym: "intermediate acoustic stria (held)" EXACT [NIF_GrossAnatomy:birnlex_76 xref: FMA:72497 ! Intermediate acoustic stria xref: NIF_GrossAnatomy:birnlex_768 ! Intermediate acoustic stria is_a: UBERON:0002316 ! white matter of neuraxis +xref: UMLS:C0175455 {source="NIF_GrossAnatomy:birnlex_768"} [Term] id: UBERON:0002953 @@ -84671,6 +85299,7 @@ is_a: UBERON:0003001 ! lemniscus xref: SCTID:362399003 ! Entire lateral lemniscus synonym: "lemniscus lateralis" RELATED LATIN [Wikipedia:Lateral_lemniscus] xref: http://upload.wikimedia.org/wikipedia/commons/4/44/Lateral_lemniscus.PNG +xref: UMLS:C0152375 {source="NIF_GrossAnatomy:birnlex_976"} [Term] id: UBERON:0002955 @@ -84689,6 +85318,7 @@ relationship: spatially_disjoint_from UBERON:0001923 {source="ABA"} ! central me relationship: spatially_disjoint_from UBERON:0001924 {source="ABA"} ! paracentral nucleus relationship: spatially_disjoint_from UBERON:0001922 {source="ABA"} ! parafascicular nucleus relationship: part_of UBERON:0002705 {source="NIFSTD"} ! midline nuclear group +xref: UMLS:C0228326 {source="NIF_GrossAnatomy:birnlex_778"} [Term] id: UBERON:0002957 @@ -84714,6 +85344,7 @@ xref: NIF_GrossAnatomy:birnlex_781 ! Medial lemniscus of pons is_a: UBERON:0003002 ! medial lemniscus intersection_of: UBERON:0003002 ! medial lemniscus intersection_of: part_of UBERON:0000988 ! pons +xref: UMLS:C0228439 {source="NIF_GrossAnatomy:birnlex_781"} [Term] id: UBERON:0002959 @@ -84722,6 +85353,7 @@ xref: FMA:62155 ! Subfascicular nucleus xref: NIF_GrossAnatomy:birnlex_783 ! Subfascicular nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002705 {source="NIFSTD"} ! midline nuclear group +xref: UMLS:C0175256 {source="NIF_GrossAnatomy:birnlex_783"} [Term] id: UBERON:0002960 @@ -84733,6 +85365,7 @@ xref: FMA:72425 ! Central oculomotor nucleus xref: NIF_GrossAnatomy:birnlex_786 ! Central oculomotor nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001715 {source="NIFSTD"} ! oculomotor nuclear complex +xref: UMLS:C0175384 {source="NIF_GrossAnatomy:birnlex_786"} [Term] id: UBERON:0002961 @@ -84803,6 +85436,7 @@ xref: SCTID:279208003 ! Entire cingulate gyrus xref: ncithesaurus:Cingulate_Gyrus ! cingulate gyrus xref: UMLS:C0018427 is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0018427 {source="NIF_GrossAnatomy:birnlex_798"} [Term] id: UBERON:0002969 @@ -84819,6 +85453,7 @@ is_a: UBERON:0000093 ! sulcus xref: SCTID:279346007 ! Entire inferior temporal sulcus xref: UMLS:C0228242 is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0228242 {source="NIF_GrossAnatomy:birnlex_800"} [Term] id: UBERON:0002971 @@ -84831,6 +85466,7 @@ xref: FMA:72475 ! dorsal periolivary nucleus is_a: UBERON:0002680 ! regional part of metencephalon relationship: part_of UBERON:0002128 ! superior olivary complex synonym: "nuclei periolivares" EXACT LATIN [FMA:TA, FMA:72475] +xref: UMLS:C0175432 {source="NIF_GrossAnatomy:birnlex_804"} [Term] id: UBERON:0002972 @@ -84861,6 +85497,7 @@ xref: ncithesaurus:Centromedian_Nucleus_of_the_Thalamus ! Centromedian Nucleus o xref: SCTID:279162007 ! Entire centromedian nucleus of thalamus synonym: "nucleus centromedianus thalami" RELATED LATIN [Wikipedia:Centromedian_nucleus] xref: UMLS:C0920328 +xref: UMLS:C0228351 {source="NIF_GrossAnatomy:birnlex_805"} [Term] id: UBERON:0002973 @@ -84888,6 +85525,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterio xref: UMLS:C0228249 xref: CALOHA:TS-2038 is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0228249 {source="NIF_GrossAnatomy:birnlex_807"} [Term] id: UBERON:0006083 @@ -84913,6 +85551,7 @@ xref: FMA:72474 ! Preolivary nucleus xref: NIF_GrossAnatomy:birnlex_814 ! Preolivary nucleus is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002128 ! superior olivary complex +xref: UMLS:C0175431 {source="NIF_GrossAnatomy:birnlex_814"} [Term] id: UBERON:0002977 @@ -84927,6 +85566,7 @@ is_a: UBERON:0002308 ! nucleus of brain relationship: spatially_disjoint_from UBERON:0007629 {source="ABA"} ! medial septal complex synonym: "nucleus triangularis septi" EXACT LATIN [FMA:TA, FMA:61880] relationship: part_of UBERON:0002663 {source="NIFSTD"} ! septal nuclear complex +xref: UMLS:C0262351 {source="NIF_GrossAnatomy:birnlex_816"} [Term] id: UBERON:0002978 @@ -84943,6 +85583,7 @@ xref: FMA:62193 ! Oral part of ventral lateral nucleus xref: NIF_GrossAnatomy:birnlex_817 ! Oral part of ventral lateral nucleus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0001925 ! ventral lateral nucleus +xref: UMLS:C0175280 {source="NIF_GrossAnatomy:birnlex_817"} [Term] id: UBERON:0002980 @@ -84953,6 +85594,7 @@ synonym: "pars opercularis gyri frontalis inferioris" EXACT [NIF_GrossAnatomy:bi xref: FMA:61981 ! Opercular part of inferior frontal gyrus xref: NIF_GrossAnatomy:birnlex_823 ! Opercular part of inferior frontal gyrus is_a: UBERON:0000064 ! organ part +xref: UMLS:C0262296 {source="NIF_GrossAnatomy:birnlex_823"} [Term] id: UBERON:0002981 @@ -84976,6 +85618,7 @@ relationship: part_of UBERON:0002736 {source="FMA"} ! lateral nuclear group synonym: "nuclei pulvinares" EXACT LATIN [FMA:TA, FMA:62178] xref: SCTID:279157006 ! Entire pulvinar xref: http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png +xref: UMLS:C0152347 {source="NIF_GrossAnatomy:birnlex_824"} [Term] id: UBERON:0002982 @@ -84988,6 +85631,7 @@ xref: NIF_GrossAnatomy:birnlex_830 ! Inferior pulvinar nucleus xref: BM:Die-Th-Pl-Pli ! inferior nucleus of pulvinar is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002981 ! pulvinar nucleus +xref: UMLS:C0228346 {source="NIF_GrossAnatomy:birnlex_830"} [Term] id: UBERON:0002983 @@ -85015,6 +85659,7 @@ xref: ncithesaurus:Lateral_Posterior_Nucleus_of_the_Thalamus ! Lateral Posterior xref: SCTID:279155003 ! Entire lateral posterior nucleus of thalamus xref: UMLS:C0228341 relationship: part_of UBERON:0002736 {source="NIFSTD"} ! lateral nuclear group +xref: UMLS:C0228341 {source="NIF_GrossAnatomy:birnlex_835"} [Term] id: UBERON:0002984 @@ -85045,6 +85690,7 @@ relationship: spatially_disjoint_from UBERON:0002685 {source="ABA"} ! anterovent synonym: "nucleus dorsalis lateralis thalami" EXACT LATIN [FMA:TA, FMA:62176] xref: SCTID:279154004 ! Entire lateral dorsal nucleus of thalamus relationship: part_of UBERON:0002736 {source="NIFSTD"} ! lateral nuclear group +xref: UMLS:C0228342 {source="NIF_GrossAnatomy:birnlex_838"} [Term] id: UBERON:0002985 @@ -85068,6 +85714,7 @@ relationship: spatially_disjoint_from UBERON:0002758 {source="ABA"} ! dorsal nuc relationship: spatially_disjoint_from UBERON:0002759 {source="ABA"} ! magnocellular nucleus of medial geniculate body synonym: "nucleus ventralis corporis geniculati medialis" EXACT LATIN [FMA:TA, FMA:62217] def: "Ventral division of medial geniculate body, first described by Morest (1964) in the cat, but found in primate, mouse and rat as well. It begins midway in the posterior third of the medial geniculate in the cat and is prominant anteriorly. The boundary between the dorsal and ventral divisions is demarcated in rat by a thick horizontally oriented axon bundle, the midgeniculate bundle (Webster, 1995, fig 16)." [NIF_GrossAnatomy:birnlex_845] +xref: UMLS:C0175295 {source="NIF_GrossAnatomy:birnlex_845"} [Term] id: UBERON:0002986 @@ -85096,6 +85743,7 @@ xref: NIF_GrossAnatomy:birnlex_859 ! Supramammillary commissure is_a: UBERON:0011590 {source="FMA"} ! commissure of diencephalon relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region xref: SCTID:369148003 ! Entire supramammillary decussation +xref: UMLS:C0228379 {source="NIF_GrossAnatomy:birnlex_859"} [Term] id: UBERON:0002992 @@ -85115,6 +85763,7 @@ relationship: part_of UBERON:0002705 {source="FMA", source="NIF", source="ABA"} relationship: spatially_disjoint_from UBERON:0001920 {source="ABA"} ! paraventricular nucleus of thalamus synonym: "nucleus parataenialis" EXACT LATIN [FMA:TA, FMA:62151] xref: SCTID:422800004 ! Entire paratenial nucleus of thalamus +xref: UMLS:C0175252 {source="NIF_GrossAnatomy:birnlex_860"} [Term] id: UBERON:0002994 @@ -85125,6 +85774,7 @@ xref: NIF_GrossAnatomy:birnlex_864 ! Nucleus of pretectal area is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum relationship: part_of UBERON:0001944 ! pretectal region +xref: UMLS:C0175358 {source="NIF_GrossAnatomy:birnlex_864"} [Term] id: UBERON:0002995 @@ -85168,6 +85818,7 @@ relationship: spatially_disjoint_from UBERON:0002711 {source="ABA"} ! nucleus of relationship: spatially_disjoint_from UBERON:0002565 {source="ABA"} ! olivary pretectal nucleus relationship: spatially_disjoint_from UBERON:0006848 {source="ABA"} ! posterior pretectal nucleus def: "Predominantly gray matter structure consisting of large multipoloar cells lying aong axons of the brachium of the superior colliculus, lyaing adjaent to the dorsal terminal nucleus of the accessory optic system. In several species, cells of this nucleus receive inpu from the contralateral retina (Sefton and Dreher in Paxinos, G. The rat nervous system, 1995, pg. 862)." [NIF_GrossAnatomy:birnlex_868] +xref: UMLS:C0175356 {source="NIF_GrossAnatomy:birnlex_868"} [Term] id: UBERON:0002997 @@ -85197,6 +85848,7 @@ xref: SCTID:362333004 ! Entire inferior frontal gyrus synonym: "gyrus frontalis inferior" RELATED LATIN [Wikipedia:Inferior_frontal_gyrus] xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Inferior_frontal_gyrus.png xref: UMLS:C0152298 +xref: UMLS:C0152298 {source="NIF_GrossAnatomy:birnlex_873"} [Term] id: UBERON:0002999 @@ -85346,6 +85998,7 @@ relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei synonym: "raphe medullae oblongatae" EXACT LATIN [FMA:TA, FMA:68874] xref: SCTID:362420006 ! Entire raphe of medulla oblongata +xref: UMLS:C0175514 {source="NIF_GrossAnatomy:birnlex_1420"} [Term] id: UBERON:0003004 @@ -85411,6 +86064,7 @@ synonym: "nucleus raphe posterior" RELATED LATIN [Wikipedia:Dorsal_raphe_nucleus synonym: "nucleus raphe dorsalis" RELATED LATIN [Wikipedia:Dorsal_raphe_nucleus] xref: http://upload.wikimedia.org/wikipedia/commons/c/c6/Drn.png subset: efo_slim +xref: UMLS:C0175392 {source="NIF_GrossAnatomy:birnlex_982"} [Term] id: UBERON:0002993 @@ -85442,6 +86096,7 @@ is_a: UBERON:0002308 ! nucleus of brain relationship: spatially_disjoint_from UBERON:0002160 {source="ABA"} ! nucleus prepositus synonym: "nucleus sublingualis" RELATED LATIN [Wikipedia:Sublingual_nucleus] relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata +xref: UMLS:C0228552 {source="NIF_GrossAnatomy:birnlex_2657"} [Term] id: UBERON:0007413 @@ -85475,6 +86130,7 @@ relationship: spatially_disjoint_from UBERON:0002267 {source="ABA"} ! laterodors relationship: spatially_disjoint_from UBERON:0002587 {source="ABA"} ! nucleus subceruleus synonym: "raphe pontis" EXACT LATIN [FMA:TA, FMA:68875] synonym: "nucleus raphes pontis" RELATED LATIN [Wikipedia:Pontine_raphe_nucleus] +xref: UMLS:C0175423 {source="NIF_GrossAnatomy:birnlex_1110"} [Term] id: UBERON:0007635 @@ -85509,6 +86165,7 @@ synonym: "nucleus raphes magnus" EXACT LATIN [FMA:TA, FMA:72584] synonym: "nucleus raphes magnus" RELATED LATIN [Wikipedia:Nucleus_raphe_magnus] xref: http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png subset: efo_slim +xref: UMLS:C0175515 {source="NIF_GrossAnatomy:birnlex_1363"} [Term] id: UBERON:0002157 @@ -85531,6 +86188,7 @@ relationship: spatially_disjoint_from UBERON:0002684 {source="ABA"} ! nucleus ra synonym: "nucleus raphes pallidus" EXACT LATIN [FMA:TA, FMA:72586] synonym: "nucleus raphes pallidus" RELATED LATIN [Wikipedia:Nucleus_raphe_pallidus] xref: http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png +xref: UMLS:C0175517 {source="NIF_GrossAnatomy:birnlex_1375"} [Term] id: UBERON:0002684 @@ -85552,6 +86210,7 @@ relationship: spatially_disjoint_from UBERON:0002157 {source="ABA"} ! nucleus ra synonym: "nucleus raphes obscurus" EXACT LATIN [FMA:TA, FMA:72585] synonym: "nucleus raphes obscurus" RELATED LATIN [Wikipedia:Nucleus_raphe_obscurus] xref: http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png +xref: UMLS:C0175516 {source="NIF_GrossAnatomy:birnlex_1369"} [Term] id: UBERON:0003005 @@ -85570,6 +86229,7 @@ is_a: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum +xref: UMLS:C0262222 {source="NIF_GrossAnatomy:birnlex_893"} [Term] id: UBERON:0006840 ! nucleus of lateral lemniscus @@ -85609,6 +86269,7 @@ xref: ABA:NLLv ! nucleus of the lateral lemniscus, ventral part is_a: UBERON:0006840 ! nucleus of lateral lemniscus relationship: part_of UBERON:0003023 {source="FMA", source="NIF"} ! pontine tegmentum synonym: "nucleus anterior lemnisci lateralis" EXACT LATIN [FMA:TA, FMA:72484] +xref: UMLS:C0175444 {source="NIF_GrossAnatomy:birnlex_1140"} [Term] id: UBERON:0003006 @@ -85622,6 +86283,7 @@ xref: BM:LLD ! dorsal nucleus of lateral lemniscus xref: ABA:NLLd ! nucleus of the lateral lemniscus, dorsal part is_a: UBERON:0006840 ! nucleus of lateral lemniscus synonym: "nucleus posterior lemnisci lateralis" EXACT LATIN [FMA:TA, FMA:72483] +xref: UMLS:C0175443 {source="NIF_GrossAnatomy:birnlex_894"} [Term] id: UBERON:0007710 @@ -85666,6 +86328,7 @@ is_a: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: part_of UBERON:0001898 ! hypothalamus relationship: part_of UBERON:0002430 ! lateral hypothalamic area +xref: UMLS:C0262221 {source="NIF_GrossAnatomy:birnlex_898"} [Term] id: UBERON:0003009 @@ -85680,6 +86343,7 @@ is_a: UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0001943 ! midbrain tegmentum synonym: "decussatio tegmentalis posterior" EXACT LATIN [FMA:TA, FMA:72451] xref: SCTID:369248009 ! Entire dorsal tegmental decussation +xref: UMLS:C0152370 {source="NIF_GrossAnatomy:birnlex_901"} [Term] id: UBERON:0007425 @@ -85703,6 +86367,7 @@ xref: FMA:72459 ! Lateral pes lemniscus xref: NIF_GrossAnatomy:birnlex_902 ! Lateral pes lemniscus is_a: UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0001943 ! midbrain tegmentum +xref: UMLS:C0175409 {source="NIF_GrossAnatomy:birnlex_902"} [Term] id: UBERON:0010123 @@ -85770,6 +86435,7 @@ relationship: spatially_disjoint_from UBERON:0002682 {source="ABA"} ! abducens n xref: TAO:0000206 ! facial nerve motor nucleus synonym: "n. nervi facialis" RELATED LATIN [Wikipedia:Facial_motor_nucleus] xref: http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray788.png +xref: UMLS:C0175442 {source="NIF_GrossAnatomy:birnlex_903"} [Term] id: UBERON:0003013 @@ -85808,6 +86474,7 @@ xref: FMA:62062 ! Postcommissural fornix xref: NIF_GrossAnatomy:birnlex_914 ! Postcommissural fornix is_a: UBERON:0000052 ! fornix of brain relationship: part_of UBERON:0002430 ! lateral hypothalamic area +xref: UMLS:C0175340 {source="NIF_GrossAnatomy:birnlex_914"} [Term] id: UBERON:0003017 @@ -85832,6 +86499,7 @@ relationship: part_of UBERON:0002743 {source="WP"} ! basal forebrain relationship: part_of UBERON:0002778 {source="ABA"} ! ventral pallidum relationship: spatially_disjoint_from UBERON:0007627 {source="ABA"} ! magnocellular nucleus xref: http://upload.wikimedia.org/wikipedia/commons/3/36/Substantia_innominata_MRI.PNG +xref: UMLS:C0038589 {source="NIF_GrossAnatomy:birnlex_915"} [Term] id: UBERON:0003018 @@ -85850,6 +86518,7 @@ xref: ABA:VPMpc ! Ventral posteromedial nucleus of the thalamus, parvicellular p is_a: UBERON:0002020 ! gray matter of neuraxis synonym: "pars parvicellularis nuclei ventralis posteromedialis thalami" EXACT LATIN [FMA:TA, FMA:62207] relationship: part_of UBERON:0002945 {source="NIFSTD"} ! ventral posteromedial nucleus +xref: UMLS:C0175290 {source="NIF_GrossAnatomy:birnlex_917"} [Term] id: UBERON:0003019 @@ -85868,6 +86537,7 @@ xref: FMA:62205 ! Oral part of ventral posterolateral nucleus xref: NIF_GrossAnatomy:birnlex_918 ! Oral part of ventral posterolateral nucleus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0002942 {source="NIFSTD"} ! ventral posterolateral nucleus +xref: UMLS:C0175286 {source="NIF_GrossAnatomy:birnlex_918"} [Term] id: UBERON:0003020 @@ -85887,6 +86557,7 @@ xref: SCTID:362357004 ! Entire parolfactory area synonym: "area subcallosa" RELATED LATIN [Wikipedia:Subcallosal_area] synonym: "area parolfactoria" RELATED LATIN [Wikipedia:Subcallosal_area] xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png +xref: UMLS:C0228282 {source="NIF_GrossAnatomy:birnlex_919"} [Term] id: UBERON:0003022 @@ -85921,6 +86592,7 @@ synonym: "tegmentum pontis" EXACT LATIN [FMA:TA, FMA:71108] xref: SCTID:362401009 ! Entire tegmental portion of pons synonym: "tegmentum pontis" RELATED LATIN [Wikipedia:Pontine_tegmentum] xref: http://upload.wikimedia.org/wikipedia/commons/9/9c/Brainstem_Abducens.png +xref: UMLS:C0228426 {source="NIF_GrossAnatomy:birnlex_923"} [Term] id: UBERON:0003024 @@ -85930,6 +86602,7 @@ xref: FMA:62208 ! Principal part of ventral posteromedial nucleus xref: NIF_GrossAnatomy:birnlex_927 ! Principal part of ventral posteromedial nucleus is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0002945 {source="NIFSTD"} ! ventral posteromedial nucleus +xref: UMLS:C0175289 {source="NIF_GrossAnatomy:birnlex_927"} [Term] id: UBERON:0003026 @@ -85943,6 +86616,7 @@ xref: NIF_GrossAnatomy:birnlex_931 ! Limitans nucleus xref: BM:Die-Th-L ! limitans nucleus of thalamus is_a: UBERON:0002308 ! nucleus of brain xref: SCTID:369181002 ! Entire limitans nucleus +xref: UMLS:C0175299 {source="NIF_GrossAnatomy:birnlex_931"} [Term] id: UBERON:0003027 @@ -85963,6 +86637,7 @@ synonym: "gyrus cinguli" RELATED PLURAL [] xref: http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray727_cingulate_gyrus.png xref: UMLS:C0598179 subset: efo_slim +xref: UMLS:C0598179 {source="NIF_GrossAnatomy:birnlex_934"} [Term] id: UBERON:0003028 @@ -85984,6 +86659,7 @@ intersection_of: UBERON:0001020 ! commissure intersection_of: part_of UBERON:0001946 ! inferior colliculus relationship: part_of UBERON:0001946 ! inferior colliculus xref: SCTID:369260005 ! Entire commissure of inferior colliculus +xref: UMLS:C0152367 {source="NIF_GrossAnatomy:birnlex_935"} [Term] id: UBERON:0003029 ! stria terminalis @@ -86002,6 +86678,7 @@ xref: BM:STr ! stria terminalis is_a: UBERON:0002316 ! white matter of neuraxis synonym: "stria terminalis" RELATED LATIN [Wikipedia:Stria_terminalis] xref: http://upload.wikimedia.org/wikipedia/commons/e/ed/Gray683.png +xref: UMLS:C0175243 {source="NIF_GrossAnatomy:birnlex_937"} [Term] id: UBERON:0003030 @@ -86019,6 +86696,7 @@ xref: TAO:0000325 ! caudal thalamic nucleus (also: UBERON:0002709 'posterior nuc synonym: "caudal thalamic nucleus" RELATED [TAO:0000325] xref: UMLS:C0262315 relationship: part_of UBERON:0002709 {source="NIFSTD"} ! posterior nuclear complex +xref: UMLS:C0262315 {source="NIF_GrossAnatomy:birnlex_939"} [Term] id: UBERON:0003031 @@ -86037,6 +86715,7 @@ relationship: spatially_disjoint_from UBERON:0002739 {source="ABA"} ! medial dor synonym: "nucleus submedialis thalami" EXACT LATIN [FMA:TA, FMA:62223] xref: SCTID:279151007 ! Entire submedial nucleus of thalamus relationship: part_of UBERON:0001897 {source="NIFSTD"} ! thalamus +xref: UMLS:C0175301 {source="NIF_GrossAnatomy:birnlex_946"} [Term] id: UBERON:0003033 @@ -86051,6 +86730,7 @@ is_a: UBERON:0002308 ! nucleus of brain relationship: spatially_disjoint_from UBERON:0002983 {source="ABA"} ! lateral posterior nucleus relationship: spatially_disjoint_from UBERON:0002709 {source="ABA"} ! posterior nuclear complex xref: SCTID:369180001 ! Entire suprageniculate nucleus +xref: UMLS:C0152346 {source="NIF_GrossAnatomy:birnlex_953"} [Term] id: UBERON:0003034 @@ -86064,6 +86744,7 @@ xref: NIF_GrossAnatomy:birnlex_956 ! Central dorsal nucleus xref: ABA:NC ! Nucleus circularis is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002965 {source="NIFSTD"} ! rostral intralaminar nuclei +xref: UMLS:C0752053 {source="NIF_GrossAnatomy:birnlex_956"} [Term] id: UBERON:0003035 @@ -86096,6 +86777,7 @@ relationship: spatially_disjoint_from UBERON:0001922 {source="ABA"} ! parafascic relationship: spatially_disjoint_from UBERON:0002955 {source="ABA"} ! rhomboidal nucleus xref: SCTID:279153005 ! Entire central lateral nucleus of thalamus relationship: part_of UBERON:0002965 {source="NIFSTD"} ! rostral intralaminar nuclei +xref: UMLS:C0228355 {source="NIF_GrossAnatomy:birnlex_961"} [Term] id: UBERON:0000446 ! septum of telencephalon @@ -86114,6 +86796,7 @@ is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001869 ! cerebral hemisphere synonym: "area septalis" EXACT LATIN [FMA:TA, FMA:61842] property_value: external_definition "Subdivision of the telencephalon on the midline between the lateral ventricles which contains the septum pellucidum and the septal nuclei[FMA][FMA:61842]." xsd:string {source="FMA:61842"} +xref: UMLS:C0752060 {source="NIF_GrossAnatomy:birnlex_963"} [Term] id: UBERON:0003037 @@ -86162,6 +86845,7 @@ xref: FMA:61964 ! Posterior part of anterior commissure xref: NIF_GrossAnatomy:birnlex_977 ! Posterior part of anterior commissure is_a: UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0000935 ! anterior commissure +xref: UMLS:C0175210 {source="NIF_GrossAnatomy:birnlex_977"} [Term] id: UBERON:0002968 @@ -86190,6 +86874,7 @@ synonym: "central gray matter" EXACT [NIF_GrossAnatomy:birnlex_2638] xref: FMA:72595 ! Central gray substance of medulla xref: NIF_GrossAnatomy:birnlex_2638 ! Central gray substance of medulla is_a: UBERON:0002308 ! nucleus of brain +xref: UMLS:C0262207 {source="NIF_GrossAnatomy:birnlex_2638"} [Term] id: UBERON:0003040 @@ -86241,6 +86926,7 @@ synonym: "periaqueductal grey" EXACT [MA:0002895] synonym: "midbrain periaqueductal grey" EXACT [MA:0000209] synonym: "central grey" RELATED [MA:0000209] subset: efo_slim +xref: UMLS:C0228398 {source="NIF_GrossAnatomy:birnlex_973"} [Term] id: UBERON:0003041 @@ -86251,6 +86937,7 @@ synonym: "trigeminal nerve tract" EXACT [FMA:72501] xref: FMA:72501 ! Trigeminal nerve tract xref: NIF_GrossAnatomy:birnlex_974 ! Trigeminal nerve fibers is_a: UBERON:0000064 ! organ part +xref: UMLS:C0175452 {source="NIF_GrossAnatomy:birnlex_974"} [Term] id: UBERON:0003044 @@ -86267,6 +86954,7 @@ relationship: part_of UBERON:0003023 {source="NIF_GrossAnatomy"} ! pontine tegme relationship: part_of UBERON:0002316 {source="NIF_GrossAnatomy"} ! white matter xref: SCTID:369083001 ! Entire uncinate fasciculus xref: http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray751.png +xref: UMLS:C0228271 {source="NIF_GrossAnatomy:birnlex_983"} [Term] id: UBERON:0003045 @@ -86296,6 +86984,7 @@ xref: FMA:72498 ! Ventral acoustic stria xref: NIF_GrossAnatomy:birnlex_991 ! Ventral acoustic stria is_a: UBERON:0002316 ! white matter of neuraxis synonym: "stria cochlearis anterior" EXACT LATIN [FMA:TA, FMA:72498] +xref: UMLS:C0175456 {source="NIF_GrossAnatomy:birnlex_991"} [Term] id: UBERON:0003047 @@ -88384,6 +89073,7 @@ relationship: homologous_in NCBITaxon:7742 {source="VHOG:0000558"} ! Vertebrata id: UBERON:0004874 ! somatopleure name: somatopleure def: "a structure created during embryogenesis when the lateral mesoderm splits into two layers - the outer (or somatic) layer becomes applied to the inner surface of the ectoderm, and with it forms the somatopleure.[WP]." [Wikipedia:Somatopleure] +comment: Gives rise to the paired appendages in jawed vertebrates. a persistent somatopleure through the redistribution and expansion of the lateral plate mesoderm is a synapomorphy for gnathostomes and a critical step in generating a novel developmental module with dramatic evolutionary potentia (Tulenko et al. 2012) http://burkelab.research.wesleyan.edu/current-projects/lamprey/ xref: Wikipedia:Somatopleure comment: todo - check relationship to LPM xref: EHDAA:381 ! somatopleure @@ -103369,6 +104059,7 @@ xref: NIF_GrossAnatomy:birnlex_1482 ! Hilus of dentate gyrus is_a: UBERON:0002744 ! hilum of dentate nucleus relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C1134421 {source="NIF_GrossAnatomy:birnlex_1482"} [Term] id: UBERON:0002744 @@ -103379,6 +104070,7 @@ xref: NIF_GrossAnatomy:birnlex_1561 ! Hilum of dentate nucleus is_a: UBERON:0002316 ! white matter of neuraxis xref: SCTID:369055003 ! Entire hilum of dentate nucleus relationship: part_of UBERON:0002132 {source="NIFSTD"} ! dentate nucleus +xref: UMLS:C1289484 {source="NIF_GrossAnatomy:birnlex_1561"} [Term] id: UBERON:0001152 @@ -104848,6 +105540,7 @@ relationship: spatially_disjoint_from UBERON:0002129 {source="ABA"} ! cerebellar synonym: "nuclei cerebelli" EXACT LATIN [FMA:TA, FMA:72249] synonym: "nuclei cerebelli" RELATED LATIN [Wikipedia:Deep_cerebellar_nuclei] xref: http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png +xref: UMLS:C0007763 {source="NIF_GrossAnatomy:birnlex_1568"} [Term] id: UBERON:0004008 ! cerebellar plate @@ -106047,6 +106740,7 @@ synonym: "vermis cerebelli" RELATED LATIN [Wikipedia:Cerebellar_vermis] xref: http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png xref: UMLS:C0228482 xref: CALOHA:TS-2059 +xref: UMLS:C0228482 {source="NIF_GrossAnatomy:birnlex_1106"} [Term] id: UBERON:0003941 @@ -108334,6 +109028,7 @@ synonym: "orbito-frontal gyrus" EXACT [] xref: NIF_GrossAnatomy:birnlex_1243 ! Fronto-orbital gyrus is_a: UBERON:0007193 {source="NIF"} ! orbital gyrus relationship: part_of UBERON:0004167 ! orbitofrontal cortex +xref: UMLS:C0262239 {source="NIF_GrossAnatomy:birnlex_1243"} [Term] id: UBERON:0002799 @@ -108347,6 +109042,7 @@ xref: BM:Tel-Cx-OFS ! orbitofrontal sulcus (also: UBERON:0002772 'olfactory sulc is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus relationship: part_of UBERON:0004167 ! orbitofrontal cortex is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0262240 {source="NIF_GrossAnatomy:birnlex_1724"} [Term] id: UBERON:0004167 ! orbitofrontal cortex @@ -108363,6 +109059,7 @@ is_a: UBERON:0002619 ! region of cerebral cortex relationship: part_of UBERON:0000349 {source="MP"} ! limbic system relationship: part_of UBERON:0001870 {source="GO", source="MP"} ! frontal lobe subset: efo_slim +xref: UMLS:C0152301 {source="NIF_GrossAnatomy:birnlex_1049"} [Term] id: UBERON:0008882 @@ -108396,6 +109093,7 @@ is_a: UBERON:0002315 {source="FMA"} ! gray matter of spinal cord synonym: "commissura grisea anaterior medullae spinalis" RELATED LATIN [Wikipedia:Gray_commissure] synonym: "commissura grisea posterior medulla spinalis" RELATED LATIN [Wikipedia:Gray_commissure] xref: http://upload.wikimedia.org/wikipedia/commons/c/c0/Medulla_spinalis_-_Substantia_grisea_-_English.svg +xref: UMLS:C1512274 {source="NIF_GrossAnatomy:birnlex_2669"} [Term] id: UBERON:0004170 ! spinal cord ventral commissure @@ -116291,6 +116989,7 @@ is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0001870 ! frontal lobe relationship: part_of UBERON:0001950 ! neocortex xref: SCTID:279206004 ! Entire gyrus rectus +xref: UMLS:C0152300 {source="NIF_GrossAnatomy:birnlex_1103"} [Term] id: UBERON:0004672 @@ -116309,6 +117008,7 @@ xref: ncithesaurus:Occipital_Horn_of_the_Lateral_Ventricle ! Occipital Horn of t xref: SCTID:362314009 ! Entire posterior horn of lateral ventricle xref: UMLS:C0152282 def: "Part of the lateral ventricle that extends posteriorly into the occipital lobe." [NIF_GrossAnatomy:birnlex_1297] +xref: UMLS:C0152282 {source="NIF_GrossAnatomy:birnlex_1297"} [Term] id: UBERON:0014641 @@ -116421,6 +117121,7 @@ synonym: "columna fornicis" EXACT LATIN [FMA:TA, FMA:61968] synonym: "columna fornicis" RELATED LATIN [Wikipedia:Columns_of_fornix] xref: http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png property_value: external_definition "The columns (anterior pillars; fornicolumns) of the fornix arch downward in front of the interventricular foramen and behind the anterior commissure, and each descends through the gray substance in the lateral wall of the third ventricle to the base of the brain, where it ends in the corpus mammillare. [WP,unvetted][Wikipedia:Columns_of_fornix]." xsd:string {source="Wikipedia:Columns_of_fornix"} +xref: UMLS:C0228289 {source="NIF_GrossAnatomy:birnlex_739"} [Term] id: UBERON:0004682 @@ -116801,6 +117502,7 @@ xref: SCTID:362313003 ! Entire septum pellucidum xref: NIF_GrossAnatomy:birnlex_1315 ! Septal pellucidum xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png xref: UMLS:C0036700 +xref: UMLS:C0036700 {source="NIF_GrossAnatomy:birnlex_1315"} [Term] id: UBERON:0006444 ! annulus fibrosus @@ -117122,6 +117824,7 @@ relationship: spatially_disjoint_from UBERON:0002266 {source="ABA"} ! anterior o relationship: spatially_disjoint_from UBERON:0002893 {source="ABA"} ! nucleus of lateral olfactory tract synonym: "gyrus olfactorius lateralis" EXACT LATIN [FMA:TA, FMA:62484] xref: SCTID:369104008 ! Entire lateral olfactory gyrus +xref: UMLS:C0228280 {source="NIF_GrossAnatomy:birnlex_1097"} [Term] id: UBERON:0004725 @@ -117145,6 +117848,7 @@ relationship: part_of UBERON:0001893 ! telencephalon synonym: "cortex piriformis" RELATED LATIN [Wikipedia:Piriform_cortex] xref: http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG xref: SCTID:369098004 ! Entire piriform area +xref: UMLS:C0228280 {source="NIF_GrossAnatomy:birnlex_1097"} [Term] id: UBERON:0004726 @@ -129395,6 +130099,7 @@ relationship: present_in_taxon NCBITaxon:7742 {source="ISBN10:0471888893"} ! Ver relationship: overlaps UBERON:0001904 ! habenula xref: SCTID:362368004 ! Entire stria medullaris property_value: external_definition "Stria medullaris of thalamus is a slender fiber bundle on the dorsal surface of the diencephalon which terminates posteriorly in the habenular nuclei[FMA:62080]." xsd:string {source="FMA:62080"} +xref: UMLS:C0228321 {source="NIF_GrossAnatomy:birnlex_1066"} [Term] id: UBERON:0006087 @@ -129410,6 +130115,7 @@ is_a: UBERON:0000122 ! nerve fiber bundle relationship: part_of UBERON:0002316 {source="NIF_GrossAnatomy"} ! white matter relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata synonym: "fibrae arcuatae internae" EXACT LATIN [FMA:TA, FMA:72629] +xref: UMLS:C0228533 {source="NIF_GrossAnatomy:birnlex_1091"} [Term] id: UBERON:0006088 @@ -129425,6 +130131,7 @@ is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003022 ! lobe parts of cerebral cortex xref: SCTID:362336007 ! Entire inferior parietal lobule subset: efo_slim +xref: UMLS:C0152304 {source="NIF_GrossAnatomy:birnlex_1194"} [Term] id: UBERON:0006089 @@ -129440,6 +130147,7 @@ xref: FMA:72630 ! dorsal external arcuate tract xref: NIF_GrossAnatomy:birnlex_1250 ! Dorsal external arcuate fiber bundle is_a: UBERON:0000122 ! nerve fiber bundle relationship: part_of UBERON:0001896 ! medulla oblongata +xref: UMLS:C0175552 {source="NIF_GrossAnatomy:birnlex_1250"} [Term] id: UBERON:0006090 @@ -129456,6 +130164,7 @@ xref: FMA:72627 ! glossopharyngeal nerve tract xref: NIF_GrossAnatomy:birnlex_1274 ! Glossopharyngeal nerve fiber bundle is_a: UBERON:0002678 ! regional part of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata +xref: UMLS:C0175550 {source="NIF_GrossAnatomy:birnlex_1274"} [Term] id: UBERON:0006091 @@ -129470,6 +130179,7 @@ is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002285 ! telencephalic ventricle synonym: "cornu inferius ventriculi lateralis" EXACT LATIN [FMA:TA, FMA:83701] xref: SCTID:362315005 ! Entire inferior horn of lateral ventricle +xref: UMLS:C0152283 {source="NIF_GrossAnatomy:birnlex_1292"} [Term] id: UBERON:0006092 @@ -129490,6 +130200,7 @@ is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0001950 ! neocortex relationship: part_of UBERON:0002021 ! occipital lobe xref: SCTID:279199007 ! Entire cuneus +xref: UMLS:C0152307 {source="NIF_GrossAnatomy:birnlex_1396"} [Term] id: UBERON:0006093 @@ -129508,6 +130219,7 @@ is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0001872 ! parietal lobe relationship: part_of UBERON:0001950 ! neocortex xref: SCTID:279200005 ! Entire precuneus +xref: UMLS:C0152306 {source="NIF_GrossAnatomy:birnlex_1446"} [Term] id: UBERON:0006094 @@ -129526,6 +130238,7 @@ is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0001872 ! parietal lobe relationship: part_of UBERON:0001950 ! neocortex xref: SCTID:279168006 ! Entire superior parietal lobule +xref: UMLS:C0152303 {source="NIF_GrossAnatomy:birnlex_1450"} [Term] id: UBERON:0006097 @@ -129539,6 +130252,7 @@ xref: NIF_GrossAnatomy:birnlex_1628 ! Ventral external arcuate fiber bundle is_a: UBERON:0000122 ! nerve fiber bundle is_a: UBERON:0002678 ! regional part of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata +xref: UMLS:C0175553 {source="NIF_GrossAnatomy:birnlex_1628"} [Term] id: UBERON:0013529 @@ -129570,6 +130284,7 @@ xref: FMA:68597 ! Brodmann area 1 xref: NIF_GrossAnatomy:birnlex_1732 ! Brodmann (1909) area 1 is_a: UBERON:0013529 {source="FMA"} ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex +xref: UMLS:C1272523 {source="NIF_GrossAnatomy:birnlex_1732"} [Term] id: UBERON:0006100 @@ -129589,6 +130304,7 @@ xref: FMA:68599 ! Brodmann area 3 xref: NIF_GrossAnatomy:birnlex_1734 ! Brodmann (1909) area 3 is_a: UBERON:0013529 {source="FMA"} ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex +xref: UMLS:C1272525 {source="NIF_GrossAnatomy:birnlex_1734"} [Term] id: UBERON:0006101 @@ -129606,6 +130322,7 @@ xref: FMA:68621 ! Brodmann area 24 xref: NIF_GrossAnatomy:birnlex_1755 ! Brodmann (1909) area 24 is_a: UBERON:0013529 {source="FMA"} ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex +xref: UMLS:C1272542 {source="NIF_GrossAnatomy:birnlex_1755"} [Term] id: UBERON:0006102 @@ -129626,6 +130343,7 @@ xref: NIF_GrossAnatomy:birnlex_1768 ! Brodmann (1909) area 35 xref: BTO:0004356 ! Brodmann area 35 is_a: UBERON:0013529 {source="FMA"} ! Brodmann area xref: SCTID:384790006 ! Entire Brodmann area 35, perirhinal +xref: UMLS:C1272496 {source="NIF_GrossAnatomy:birnlex_1768"} [Term] id: UBERON:0006104 @@ -129644,6 +130362,7 @@ xref: FMA:68633 ! Brodmann area 36 xref: NIF_GrossAnatomy:birnlex_1769 ! Brodmann (1909) area 36 xref: BTO:0004357 ! Brodmann area 36 is_a: UBERON:0013529 {source="FMA"} ! Brodmann area +xref: UMLS:C1272497 {source="NIF_GrossAnatomy:birnlex_1769"} [Term] id: UBERON:0013528 @@ -129662,6 +130381,7 @@ synonym: "brodmann (1909) area 11" EXACT [NIF_GrossAnatomy:birnlex_1742] is_a: UBERON:0013529 {source="FMA"} ! Brodmann area xref: FMA:68608 ! brodmann area 11 xref: NIF_GrossAnatomy:birnlex_1742 ! Brodmann (1909) area 11 +xref: UMLS:C1272533 {source="NIF_GrossAnatomy:birnlex_1742"} [Term] id: UBERON:0004717 @@ -129682,6 +130402,7 @@ xref: FMA:68626 ! Brodmann area 29 xref: NIF_GrossAnatomy:birnlex_1763 ! Brodmann (1909) area 29 is_a: UBERON:0013529 {source="FMA"} ! Brodmann area property_value: external_definition "A cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. In the human it is a narrow band located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the ectosplenial area 26 and externally by the agranular retrolimbic area 30[BTO:0003978]." xsd:string {source="BTO:0003978"} +xref: UMLS:C1272490 {source="NIF_GrossAnatomy:birnlex_1763"} [Term] id: UBERON:0004718 @@ -129702,6 +130423,7 @@ xref: FMA:68623 ! Brodmann area 26 xref: NIF_GrossAnatomy:birnlex_1757 ! Brodmann (1909) area 26 is_a: UBERON:0013529 {source="FMA"} ! Brodmann area property_value: external_definition "In the human this area is called ectosplenial area 26. It is a cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. It is a narrow band located in the isthmus of cingulate gyrus adjacent to the fasciolar gyrus internally. It is bounded externally by the granular retrolimbic area 29[BTO:0003979]." xsd:string {source="BTO:0003979"} +xref: UMLS:C1272489 {source="NIF_GrossAnatomy:birnlex_1757"} [Term] @@ -129719,6 +130441,7 @@ synonym: "Brodmann's area 2" EXACT [FMA:68598] synonym: "Caudal postcentral area" EXACT [FMA:68598] xref: FMA:68598 ! Brodmann area 2 synonym: "Brodmann area 2" EXACT [FMA:68598] +xref: UMLS:C1272524 {source="NIF_GrossAnatomy:birnlex_1733"} [Term] id: UBERON:0013535 @@ -129735,6 +130458,7 @@ synonym: "Brodmann's area 4" EXACT [FMA:68600] synonym: "Giant pyramidal area" EXACT [FMA:68600] xref: FMA:68600 ! Brodmann area 4 synonym: "Brodmann area 4" EXACT [FMA:68600] +xref: UMLS:C1272526 {source="NIF_GrossAnatomy:birnlex_1735"} [Term] id: UBERON:0013538 @@ -129751,6 +130475,7 @@ is_a: UBERON:0013529 {source="NIF_GrossAnatomy"} ! Brodmann area xref: NIF_GrossAnatomy:birnlex_1738 ! Brodmann (1909) area 7 xref: FMA:68604 ! Brodmann area 7 synonym: "Brodmann area 7" EXACT [FMA:68604] +xref: UMLS:C1272529 {source="NIF_GrossAnatomy:birnlex_1738"} [Term] id: UBERON:0013539 @@ -129769,6 +130494,7 @@ synonym: "Area 8 of Brodmann" EXACT [FMA:68605] synonym: "Intermediate frontal area" EXACT [FMA:68605] xref: FMA:68605 ! Brodmann area 8 synonym: "Brodmann area 8" EXACT [FMA:68605] +xref: UMLS:C1272530 {source="NIF_GrossAnatomy:birnlex_1739"} [Term] id: UBERON:0013540 @@ -129787,6 +130513,7 @@ synonym: "Area 9 of Brodmann" EXACT [FMA:68606] synonym: "Granular frontal area" EXACT [FMA:68606] xref: FMA:68606 ! Brodmann area 9 synonym: "Brodmann area 9" EXACT [FMA:68606] +xref: UMLS:C1272531 {source="NIF_GrossAnatomy:birnlex_1740"} [Term] id: UBERON:0013541 @@ -129803,6 +130530,7 @@ synonym: "Area 10 of Brodmann" EXACT [FMA:68607] synonym: "Lateral orbital area" EXACT [FMA:68607] xref: FMA:68607 ! Brodmann area 10 synonym: "Brodmann area 10" EXACT [FMA:68607] +xref: UMLS:C1272532 {source="NIF_GrossAnatomy:birnlex_1741"} [Term] id: UBERON:0013543 @@ -129826,6 +130554,7 @@ synonym: "brodmann (1909) area 12" EXACT [NIF_GrossAnatomy:birnlex_1743] is_a: UBERON:0013529 {source="NIF_GrossAnatomy"} ! Brodmann area xref: NIF_GrossAnatomy:birnlex_1743 ! Brodmann (1909) area 12 xref: FMA:68609 ! brodmann area 12 +xref: UMLS:C1272534 {source="NIF_GrossAnatomy:birnlex_1743"} [Term] id: UBERON:0013544 @@ -129894,6 +130623,7 @@ synonym: "Brodmann's area 19" EXACT [FMA:68616] synonym: "Preoccipital area" EXACT [FMA:68616] xref: FMA:68616 ! Brodmann area 19 synonym: "Brodmann area 19" EXACT [FMA:68616] +xref: UMLS:C1272537 {source="NIF_GrossAnatomy:birnlex_1750"} [Term] id: UBERON:0013551 @@ -129909,6 +130639,7 @@ synonym: "Area 20 of Brodmann" EXACT [FMA:68617] synonym: "Inferior temporal area" EXACT [FMA:68617] xref: FMA:68617 ! Brodmann area 20 synonym: "Brodmann area 20" EXACT [FMA:68617] +xref: UMLS:C1272538 {source="NIF_GrossAnatomy:birnlex_1751"} [Term] id: UBERON:0004685 @@ -129939,6 +130670,7 @@ is_a: UBERON:0013529 {source="NIF_GrossAnatomy"} ! Brodmann area relationship: part_of UBERON:0004685 {notes="consider merging many sources treat as synonymous"} ! middle temporal area xref: FMA:68618 ! Brodmann area 21 xref: NIF_GrossAnatomy:birnlex_1752 ! Brodmann (1909) area 21 +xref: UMLS:C1272539 {source="NIF_GrossAnatomy:birnlex_1752"} [Term] id: UBERON:0013553 @@ -129957,6 +130689,7 @@ synonym: "Area 22 of Brodmann" EXACT [FMA:68619] synonym: "Superior temporal area" EXACT [FMA:68619] xref: FMA:68619 ! Brodmann area 22 synonym: "Brodmann area 22" EXACT [FMA:68619] +xref: UMLS:C1272540 {source="NIF_GrossAnatomy:birnlex_1753"} [Term] id: UBERON:0013554 @@ -129976,6 +130709,7 @@ synonym: "Granular cingulate area" EXACT [FMA:68620] synonym: "Posterior cingulate area" EXACT [FMA:68620] xref: FMA:68620 ! Brodmann area 23 synonym: "Brodmann area 23" EXACT [FMA:68620] +xref: UMLS:C1272541 {source="NIF_GrossAnatomy:birnlex_1754"} [Term] id: UBERON:0013556 @@ -129991,6 +130725,7 @@ synonym: "Area 25 of Brodmann" EXACT [FMA:68622] synonym: "Brodmann's area 25" EXACT [FMA:68622] xref: FMA:68622 ! Brodmann area 25 synonym: "Brodmann area 25" EXACT [FMA:68622] +xref: UMLS:C1272543 {source="NIF_GrossAnatomy:birnlex_1756"} [Term] id: UBERON:0001953 @@ -130011,6 +130746,7 @@ relationship: spatially_disjoint_from UBERON:0002728 {source="ABA"} ! entorhinal relationship: spatially_disjoint_from UBERON:0004683 {source="ABA"} ! parasubiculum relationship: spatially_disjoint_from UBERON:0002191 {source="ABA"} ! subiculum xref: http://upload.wikimedia.org/wikipedia/commons/5/5f/Brodmann_Cytoarchitectonics_27.png +xref: UMLS:C0175194 {source="NIF_GrossAnatomy:birnlex_1108"} [Term] id: UBERON:0013558 @@ -130032,6 +130768,7 @@ is_a: UBERON:0013529 {source="NIF_GrossAnatomy"} ! Brodmann area relationship: part_of UBERON:0001953 {notes="consider merging many sources treat as synonymous"} ! presubiculum xref: NIF_GrossAnatomy:birnlex_1758 ! Brodmann (1909) area 27 xref: FMA:68624 ! Brodmann area 27 +xref: UMLS:C0175194 {source="NIF_GrossAnatomy:birnlex_1758"} [Term] id: UBERON:0002895 @@ -130071,6 +130808,7 @@ relationship: part_of UBERON:0002895 {notes="consider merging many sources treat xref: NIF_GrossAnatomy:birnlex_1759 ! Brodmann (1909) area 28 xref: FMA:68625 ! Brodmann area 28 synonym: "Brodmann area 28" EXACT [] +xref: UMLS:C0598377 {source="NIF_GrossAnatomy:birnlex_1759"} [Term] id: UBERON:0013560 @@ -130089,6 +130827,7 @@ synonym: "Area 32 of Brodmann" EXACT [FMA:68629] synonym: "Prelimbic area" EXACT [FMA:68629] xref: FMA:68629 ! Brodmann area 32 synonym: "Brodmann area 32" EXACT [FMA:68629] +xref: UMLS:C1272493 {source="NIF_GrossAnatomy:birnlex_1760"} [Term] id: UBERON:0013561 @@ -130101,6 +130840,7 @@ synonym: "brodmann (1909) area 43" EXACT [NIF_GrossAnatomy:birnlex_1761] is_a: UBERON:0013529 {source="NIF_GrossAnatomy"} ! Brodmann area xref: NIF_GrossAnatomy:birnlex_1761 ! Brodmann (1909) area 43 synonym: "Brodmann area 43" EXACT [] +xref: UMLS:C1272506 {source="NIF_GrossAnatomy:birnlex_1761"} [Term] id: UBERON:0013562 @@ -130129,6 +130869,7 @@ relationship: part_of UBERON:0001872 ! parietal lobe xref: SCTID:279185008 ! Entire supramarginal gyrus xref: http://upload.wikimedia.org/wikipedia/commons/e/ec/Gehirn,_lateral_-_Hauptgyri_beschriftet.svg xref: UMLS:C0228214 +xref: UMLS:C0228214 {source="NIF_GrossAnatomy:birnlex_1381"} [Term] id: UBERON:0013573 @@ -130147,6 +130888,7 @@ synonym: "Area 40 of Brodmann" EXACT [FMA:68637] synonym: "Supramarginal area 40" EXACT [FMA:68637] xref: FMA:68637 ! Brodmann area 40 synonym: "Brodmann area 40" EXACT [FMA:68637] +xref: UMLS:C1272501 {source="NIF_GrossAnatomy:birnlex_1773"} [Term] id: UBERON:0006095 @@ -130171,6 +130913,7 @@ xref: FMA:68638 ! Brodmann area 41 xref: NIF_GrossAnatomy:birnlex_1582 ! Anterior transverse termporal area 41 is_a: UBERON:0013529 {source="NIF_GrossAnatomy"} ! Brodmann area is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C1272502 {source="NIF_GrossAnatomy:birnlex_1774"} [Term] id: UBERON:0006096 @@ -130195,6 +130938,7 @@ xref: NIF_GrossAnatomy:birnlex_1589 ! Posterior transverse termporal area 42 xref: NIF_GrossAnatomy:birnlex_1775 ! Brodmann (1909) area 42 is_a: UBERON:0013529 {source="NIF_GrossAnatomy"} ! Brodmann area is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C1272506 {source="NIF_GrossAnatomy:birnlex_1775"} [Term] id: UBERON:0013531 @@ -130227,6 +130971,8 @@ xref: NIF_GrossAnatomy:birnlex_2553 ! Cochlear canal is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001844 ! cochlea xref: SCTID:279779009 ! Entire cochlear canal +xref: UMLS:C0009198 {source="NIF_GrossAnatomy:birnlex_2553"} +xref: UMLS:C0458767 {source="NIF_GrossAnatomy:birnlex_2553"} [Term] id: UBERON:0006108 @@ -130243,6 +130989,7 @@ xref: NIF_GrossAnatomy:birnlex_2680 ! Corticomedial nuclear complex is_a: UBERON:0007245 ! nuclear complex of neuraxis relationship: part_of UBERON:0001876 ! amygdala synonym: "set of corticomedial nuclei of amygdala" EXACT [FMA:84015] +xref: UMLS:C0175214 {source="NIF_GrossAnatomy:birnlex_2680"} [Term] id: UBERON:0006114 @@ -130258,6 +131005,7 @@ is_a: UBERON:0003022 ! lobe parts of cerebral cortex relationship: part_of UBERON:0001950 ! neocortex relationship: part_of UBERON:0002021 ! occipital lobe xref: SCTID:369218006 ! Entire lateral occipital gyrus +xref: UMLS:C0228228 {source="NIF_GrossAnatomy:birnlex_735"} [Term] id: UBERON:0006115 @@ -130277,6 +131025,7 @@ is_a: UBERON:0002780 ! regional part of forebrain synonym: "crus fornicis" EXACT LATIN [FMA:TA, FMA:61969] xref: SCTID:369116002 ! Entire crus of fornix def: "Part of fornix adjacent to the fimbria comprising flattened bands of fibers that extend from the fimbria, running underneath the corpus callosum" [NIF_GrossAnatomy:birnlex_754] +xref: UMLS:C0228288 {source="NIF_GrossAnatomy:birnlex_754"} [Term] id: UBERON:0006116 @@ -130293,6 +131042,7 @@ xref: FMA:72628 ! vagal nerve tract xref: NIF_GrossAnatomy:birnlex_765 ! Vagal nerve fiber bundle is_a: UBERON:0000122 ! nerve fiber bundle relationship: part_of UBERON:0001896 ! medulla oblongata +xref: UMLS:C0175551 {source="NIF_GrossAnatomy:birnlex_765"} [Term] id: UBERON:0006117 @@ -130306,6 +131056,7 @@ xref: FMA:72626 ! accessory nerve tract xref: NIF_GrossAnatomy:birnlex_916 ! Accessory nerve fiber bundle is_a: UBERON:0000122 ! nerve fiber bundle relationship: part_of UBERON:0001896 ! medulla oblongata +xref: UMLS:C0175549 {source="NIF_GrossAnatomy:birnlex_916"} [Term] id: UBERON:0006118 @@ -132555,6 +133306,7 @@ xref: FMA:71187 ! l1 segment xref: NIF_GrossAnatomy:birnlex_1336 ! First lumbar spinal cord segment is_a: UBERON:0007716 ! lumbar subsegment of spinal cord xref: SCTID:278776009 ! First lumbar spinal cord segment +xref: UMLS:C0457872 {source="NIF_GrossAnatomy:birnlex_1336"} [Term] id: UBERON:0006450 @@ -132567,6 +133319,7 @@ xref: FMA:71188 ! l2 segment xref: NIF_GrossAnatomy:birnlex_1345 ! Second lumbar spinal cord segment is_a: UBERON:0007716 ! lumbar subsegment of spinal cord xref: SCTID:278777000 ! Second lumbar spinal cord segment +xref: UMLS:C0457873 {source="NIF_GrossAnatomy:birnlex_1345"} [Term] id: UBERON:0006449 @@ -132579,6 +133332,7 @@ xref: FMA:71189 ! l3 segment xref: NIF_GrossAnatomy:birnlex_1340 ! Third lumbar spinal cord segment is_a: UBERON:0007716 ! lumbar subsegment of spinal cord xref: SCTID:278778005 ! Third lumbar spinal cord segment +xref: UMLS:C0457874 {source="NIF_GrossAnatomy:birnlex_1340"} [Term] id: UBERON:0006451 @@ -132590,6 +133344,7 @@ xref: FMA:71190 ! l4 segment xref: NIF_GrossAnatomy:birnlex_1352 ! Forth lumbar spinal cord segment is_a: UBERON:0007716 ! lumbar subsegment of spinal cord xref: SCTID:278779002 ! Fourth lumbar spinal cord segment +xref: UMLS:C0457875 {source="NIF_GrossAnatomy:birnlex_1352"} [Term] id: UBERON:0006447 @@ -132602,6 +133357,7 @@ xref: FMA:71191 ! l5 segment xref: NIF_GrossAnatomy:birnlex_1251 ! Fifth lumbar spinal cord segment is_a: UBERON:0007716 ! lumbar subsegment of spinal cord xref: SCTID:278775008 ! Fifth lumbar spinal cord segment +xref: UMLS:C0457871 {source="NIF_GrossAnatomy:birnlex_1251"} [Term] id: UBERON:0006457 @@ -132614,6 +133370,7 @@ xref: FMA:62421 ! t1 segment xref: NIF_GrossAnatomy:birnlex_1452 ! First thoracic spinal cord segment is_a: UBERON:0007715 ! thoracic subsegment of spinal cord xref: SCTID:278762008 ! First thoracic spinal cord segment +xref: UMLS:C0457859 {source="NIF_GrossAnatomy:birnlex_1452"} [Term] id: UBERON:0006458 @@ -132626,6 +133383,7 @@ xref: FMA:62422 ! t2 segment xref: NIF_GrossAnatomy:birnlex_1454 ! Second thoracic spinal cord segment is_a: UBERON:0007715 ! thoracic subsegment of spinal cord xref: SCTID:278763003 ! Second thoracic spinal cord segment +xref: UMLS:C0457860 {source="NIF_GrossAnatomy:birnlex_1454"} [Term] id: UBERON:0006459 @@ -132638,6 +133396,7 @@ xref: FMA:71169 ! t3 segment xref: NIF_GrossAnatomy:birnlex_1458 ! Third thoracic spinal cord segment is_a: UBERON:0007715 ! thoracic subsegment of spinal cord xref: SCTID:278764009 ! Third thoracic spinal cord segment +xref: UMLS:C0457861 {source="NIF_GrossAnatomy:birnlex_1458"} [Term] id: UBERON:0006452 @@ -132649,6 +133408,7 @@ xref: FMA:71170 ! t4 segment xref: NIF_GrossAnatomy:birnlex_1378 ! Forth thoracic spinal cord segment is_a: UBERON:0007715 ! thoracic subsegment of spinal cord xref: SCTID:278766006 ! Fourth thoracic spinal cord segment +xref: UMLS:C0457862 {source="NIF_GrossAnatomy:birnlex_1378"} [Term] id: UBERON:0006453 @@ -132661,6 +133421,7 @@ xref: FMA:71171 ! t5 segment xref: NIF_GrossAnatomy:birnlex_1383 ! Fifth thoracic spinal cord segment is_a: UBERON:0007715 ! thoracic subsegment of spinal cord xref: SCTID:278767002 ! Fifth thoracic spinal cord segment +xref: UMLS:C0457863 {source="NIF_GrossAnatomy:birnlex_1383"} [Term] id: UBERON:0006454 @@ -132673,6 +133434,7 @@ xref: FMA:71172 ! t6 segment xref: NIF_GrossAnatomy:birnlex_1387 ! Sixth thoracic spinal cord segment is_a: UBERON:0007715 ! thoracic subsegment of spinal cord xref: SCTID:278768007 ! Sixth thoracic spinal cord segment +xref: UMLS:C0457864 {source="NIF_GrossAnatomy:birnlex_1387"} [Term] id: UBERON:0006455 @@ -132685,6 +133447,7 @@ xref: FMA:71173 ! t7 segment xref: NIF_GrossAnatomy:birnlex_1392 ! Seventh thoracic spinal cord segment is_a: UBERON:0007715 ! thoracic subsegment of spinal cord xref: SCTID:278769004 ! Seventh thoracic spinal cord segment +xref: UMLS:C0457865 {source="NIF_GrossAnatomy:birnlex_1392"} [Term] id: UBERON:0006456 @@ -132697,6 +133460,7 @@ xref: FMA:71174 ! t8 segment xref: NIF_GrossAnatomy:birnlex_1398 ! Eighth thoracic spinal cord segment is_a: UBERON:0007715 ! thoracic subsegment of spinal cord xref: SCTID:278770003 ! Eighth thoracic spinal cord segment +xref: UMLS:C0457866 {source="NIF_GrossAnatomy:birnlex_1398"} [Term] id: UBERON:0006465 @@ -132709,6 +133473,7 @@ xref: FMA:71175 ! t9 segment xref: NIF_GrossAnatomy:birnlex_1584 ! Ninth thoracic spinal cord segment is_a: UBERON:0007715 ! thoracic subsegment of spinal cord xref: SCTID:278771004 ! Ninth thoracic spinal cord segment +xref: UMLS:C0457867 {source="NIF_GrossAnatomy:birnlex_1584"} [Term] id: UBERON:0006466 @@ -132721,6 +133486,7 @@ xref: FMA:71176 ! t10 segment xref: NIF_GrossAnatomy:birnlex_1591 ! Tenth thoracic spinal cord segment is_a: UBERON:0007715 ! thoracic subsegment of spinal cord xref: SCTID:278772006 ! Tenth thoracic spinal cord segment +xref: UMLS:C0457868 {source="NIF_GrossAnatomy:birnlex_1591"} [Term] id: UBERON:0006467 @@ -132733,6 +133499,7 @@ xref: FMA:71177 ! t11 segment xref: NIF_GrossAnatomy:birnlex_1596 ! Eleventh thoracic spinal cord segment is_a: UBERON:0007715 ! thoracic subsegment of spinal cord xref: SCTID:278773001 ! Eleventh thoracic spinal cord segment +xref: UMLS:C0457869 {source="NIF_GrossAnatomy:birnlex_1596"} [Term] id: UBERON:0006468 @@ -132745,6 +133512,7 @@ xref: FMA:71178 ! t12 segment xref: NIF_GrossAnatomy:birnlex_1598 ! Twelfth thoracic spinal cord segment is_a: UBERON:0007715 ! thoracic subsegment of spinal cord xref: SCTID:278774007 ! Twelfth thoracic spinal cord segment +xref: UMLS:C0457870 {source="NIF_GrossAnatomy:birnlex_1598"} [Term] id: UBERON:0006460 @@ -132757,6 +133525,7 @@ xref: FMA:256625 ! s1 segment xref: NIF_GrossAnatomy:birnlex_1532 ! First sacral spinal cord segment is_a: UBERON:0007717 ! sacral subsegment of spinal cord xref: SCTID:278780004 ! First sacral spinal cord segment +xref: UMLS:C0457876 {source="NIF_GrossAnatomy:birnlex_1532"} [Term] id: UBERON:0006461 @@ -132769,6 +133538,7 @@ xref: FMA:256627 ! s2 segment xref: NIF_GrossAnatomy:birnlex_1539 ! Second sacral spinal cord segment is_a: UBERON:0007717 ! sacral subsegment of spinal cord xref: SCTID:278781000 ! Second sacral spinal cord segment +xref: UMLS:C0457877 {source="NIF_GrossAnatomy:birnlex_1539"} [Term] id: UBERON:0006462 @@ -132781,6 +133551,7 @@ xref: FMA:256629 ! s3 segment xref: NIF_GrossAnatomy:birnlex_1544 ! Third sacral spinal cord segment is_a: UBERON:0007717 ! sacral subsegment of spinal cord xref: SCTID:278782007 ! Third sacral spinal cord segment +xref: UMLS:C0457878 {source="NIF_GrossAnatomy:birnlex_1544"} [Term] id: UBERON:0006463 @@ -132792,6 +133563,7 @@ xref: FMA:256631 ! s4 segment xref: NIF_GrossAnatomy:birnlex_1548 ! Forth sacral spinal cord segment is_a: UBERON:0007717 ! sacral subsegment of spinal cord xref: SCTID:278783002 ! Fourth sacral spinal cord segment +xref: UMLS:C0457879 {source="NIF_GrossAnatomy:birnlex_1548"} [Term] id: UBERON:0006464 @@ -132804,6 +133576,7 @@ xref: FMA:256633 ! s5 segment xref: NIF_GrossAnatomy:birnlex_1553 ! Fifth sacral spinal cord segment is_a: UBERON:0007717 ! sacral subsegment of spinal cord xref: SCTID:278784008 ! Fifth sacral spinal cord segment +xref: UMLS:C0457880 {source="NIF_GrossAnatomy:birnlex_1553"} [Term] id: UBERON:0006469 @@ -132816,6 +133589,7 @@ xref: FMA:71179 ! c1 segment xref: NIF_GrossAnatomy:birnlex_1694 ! First cervical spinal cord segment is_a: UBERON:0007714 ! cervical subsegment of spinal cord xref: SCTID:278754000 ! First cervical spinal cord segment +xref: UMLS:C0457851 {source="NIF_GrossAnatomy:birnlex_1694"} [Term] id: UBERON:0006489 @@ -132828,6 +133602,7 @@ xref: FMA:71180 ! c2 segment xref: NIF_GrossAnatomy:birnlex_752 ! Second cervical spinal cord segment is_a: UBERON:0007714 ! cervical subsegment of spinal cord xref: SCTID:278755004 ! Second cervical spinal cord segment +xref: UMLS:C0457852 {source="NIF_GrossAnatomy:birnlex_752"} [Term] id: UBERON:0006488 @@ -132840,6 +133615,7 @@ xref: FMA:71181 ! c3 segment xref: NIF_GrossAnatomy:birnlex_744 ! Third cervical spinal cord segment is_a: UBERON:0007714 ! cervical subsegment of spinal cord xref: SCTID:278756003 ! Third cervical spinal cord segment +xref: UMLS:C0457853 {source="NIF_GrossAnatomy:birnlex_744"} [Term] id: UBERON:0006490 @@ -132852,6 +133628,7 @@ xref: FMA:71182 ! c4 segment xref: NIF_GrossAnatomy:birnlex_753 ! Forth cervical spinal cord segment is_a: UBERON:0007714 ! cervical subsegment of spinal cord xref: SCTID:278757007 ! Fourth cervical spinal cord segment +xref: UMLS:C0457854 {source="NIF_GrossAnatomy:birnlex_753"} [Term] id: UBERON:0006491 @@ -132864,6 +133641,7 @@ xref: FMA:71183 ! c5 segment xref: NIF_GrossAnatomy:birnlex_760 ! Fifth cervical spinal cord segment is_a: UBERON:0007714 ! cervical subsegment of spinal cord xref: SCTID:278758002 ! Fifth cervical spinal cord segment +xref: UMLS:C0457855 {source="NIF_GrossAnatomy:birnlex_760"} [Term] id: UBERON:0006492 @@ -132876,6 +133654,7 @@ xref: FMA:71184 ! c6 segment xref: NIF_GrossAnatomy:birnlex_766 ! Sixth cervical spinal cord segment is_a: UBERON:0007714 ! cervical subsegment of spinal cord xref: SCTID:278759005 ! Sixth cervical spinal cord segment +xref: UMLS:C0457856 {source="NIF_GrossAnatomy:birnlex_766"} [Term] id: UBERON:0006493 @@ -132888,6 +133667,7 @@ xref: FMA:71185 ! c7 segment xref: NIF_GrossAnatomy:birnlex_773 ! Seventh cervical spinal cord segment is_a: UBERON:0007714 ! cervical subsegment of spinal cord xref: SCTID:278760000 ! Seventh cervical spinal cord segment +xref: UMLS:C0457857 {source="NIF_GrossAnatomy:birnlex_773"} [Term] id: UBERON:0006470 @@ -132900,6 +133680,7 @@ xref: FMA:71186 ! c8 segment xref: NIF_GrossAnatomy:birnlex_1696 ! Eighth cervical spinal cord segment is_a: UBERON:0007714 ! cervical subsegment of spinal cord xref: SCTID:278761001 ! Eighth cervical spinal cord segment +xref: UMLS:C0457858 {source="NIF_GrossAnatomy:birnlex_1696"} [Term] id: UBERON:0006471 @@ -132923,6 +133704,7 @@ relationship: part_of UBERON:0000956 ! cerebral cortex xref: SCTID:384764008 ! Entire Brodmann area 5, preparietal xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Brodmann_areas_5.png is_a: UBERON:0013529 ! Brodmann area +xref: UMLS:C1272527 {source="NIF_GrossAnatomy:birnlex_1736"} [Term] id: UBERON:0006472 @@ -132947,6 +133729,7 @@ relationship: part_of UBERON:0000956 ! cerebral cortex xref: SCTID:384765009 ! Entire Brodmann area 6, agranular frontal xref: http://upload.wikimedia.org/wikipedia/commons/1/11/Brodmann_areas_6.png is_a: UBERON:0013529 ! Brodmann area +xref: UMLS:C1272528 {source="NIF_GrossAnatomy:birnlex_1737"} [Term] id: UBERON:0006473 @@ -132972,6 +133755,7 @@ is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex xref: SCTID:384773000 ! Entire Brodmann area 18, parastriate is_a: UBERON:0013529 ! Brodmann area +xref: UMLS:C1272536 {source="NIF_GrossAnatomy:birnlex_1749"} [Term] id: UBERON:0006474 @@ -132995,6 +133779,7 @@ is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex xref: SCTID:384784007 ! Entire Brodmann area 30, agranular retrolimbic is_a: UBERON:0013529 ! Brodmann area +xref: UMLS:C1272491 {source="NIF_GrossAnatomy:birnlex_1764"} [Term] id: UBERON:0006475 @@ -133020,6 +133805,7 @@ is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex xref: SCTID:384785008 ! Entire Brodmann area 31, dorsal posterior cingulate is_a: UBERON:0013529 ! Brodmann area +xref: UMLS:C1272492 {source="NIF_GrossAnatomy:birnlex_1765"} [Term] id: UBERON:0006476 @@ -133043,6 +133829,7 @@ is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex xref: SCTID:384788005 ! Entire Brodmann area 33, pregenual is_a: UBERON:0013529 ! Brodmann area +xref: UMLS:C1272494 {source="NIF_GrossAnatomy:birnlex_1766"} [Term] id: UBERON:0006477 @@ -133065,6 +133852,7 @@ is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex xref: SCTID:384789002 ! Entire Brodmann area 34, dorsal entorhinal is_a: UBERON:0013529 ! Brodmann area +xref: UMLS:C1272495 {source="NIF_GrossAnatomy:birnlex_1767"} [Term] id: UBERON:0006478 @@ -133087,6 +133875,7 @@ is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex xref: SCTID:384792003 ! Entire Brodmann area 37, occipitotemporal is_a: UBERON:0013529 ! Brodmann area +xref: UMLS:C1272498 {source="NIF_GrossAnatomy:birnlex_1770"} [Term] id: UBERON:0006479 @@ -133106,6 +133895,7 @@ is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex xref: SCTID:384793008 ! Entire Brodmann area 38, temporopolar is_a: UBERON:0013529 ! Brodmann area +xref: UMLS:C1272499 {source="NIF_GrossAnatomy:birnlex_1771"} [Term] id: UBERON:0006480 @@ -133127,6 +133917,7 @@ is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex xref: SCTID:384794002 ! Entire Brodmann area 39, angular is_a: UBERON:0013529 ! Brodmann area +xref: UMLS:C1272500 {source="NIF_GrossAnatomy:birnlex_1772"} [Term] id: UBERON:0006481 @@ -133146,6 +133937,7 @@ is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex xref: SCTID:384803008 ! Entire Brodmann area 44, opercular is_a: UBERON:0013529 ! Brodmann area +xref: UMLS:C1272509 {source="NIF_GrossAnatomy:birnlex_1776"} [Term] id: UBERON:0006482 @@ -133169,6 +133961,7 @@ relationship: part_of UBERON:0000956 ! cerebral cortex xref: SCTID:384805001 ! Entire Brodmann area 45, triangular is_a: UBERON:0013529 ! Brodmann area property_value: external_definition "Brodmann area 45 (BA45), is part of the frontal cortex in the human brain. Situated on the lateral surface, inferior to BA9 and adjacent to BA46. This area is also known as pars triangular (of the inferior frontal gyrus). In the human, it occupies the triangular part of inferior frontal gyrus (H) and, surrounding the anterior horizontal limb of lateral sulcus (H), a portion of the orbital part of inferior frontal gyrus (H). Bounded caudally by the anterior ascending limb of lateral sulcus (H), it borders on the insula in the depth of the lateral sulcus. In terms of cytoarchitecture, it is bounded caudally by the opercular area 44 (BA44), rostrodorsally by the middle frontal area 46 (BA46), and ventrally by the orbital area 47 (BA47) (Brodmann-1909)[Wikipedia:Brodmann_area_45]." xsd:string {source="Wikipedia:Brodmann_area_45"} +xref: UMLS:C1272511 {source="NIF_GrossAnatomy:birnlex_1777"} [Term] id: UBERON:0006483 ! brodmann (1909) area 46 @@ -133192,6 +133985,7 @@ relationship: part_of UBERON:0000956 ! cerebral cortex xref: SCTID:384806000 ! Entire Brodmann area 46, middle frontal xref: http://upload.wikimedia.org/wikipedia/commons/c/cd/Brodmann_area_46.png is_a: UBERON:0013529 ! Brodmann area +xref: UMLS:C1272512 {source="NIF_GrossAnatomy:birnlex_1778"} [Term] id: UBERON:0009834 ! dorsolateral prefrontal cortex @@ -133224,6 +134018,7 @@ is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex xref: SCTID:384807009 ! Entire Brodmann area 47, orbital is_a: UBERON:0013529 ! Brodmann area +xref: UMLS:C1272513 {source="NIF_GrossAnatomy:birnlex_1779"} [Term] id: UBERON:0006485 @@ -133244,6 +134039,7 @@ xref: NIF_GrossAnatomy:birnlex_1791 ! Brodmann (1909) area 48 is_a: UBERON:0002619 ! regional part of cerebral cortex xref: SCTID:384808004 ! Entire Brodmann area 48, retrosubicular is_a: UBERON:0013529 ! Brodmann area +xref: UMLS:C1272514 {source="NIF_GrossAnatomy:birnlex_1791"} [Term] id: UBERON:0006486 @@ -133261,6 +134057,7 @@ xref: NIF_GrossAnatomy:birnlex_1792 ! Brodmann (1909) area 52 is_a: UBERON:0002619 ! regional part of cerebral cortex xref: SCTID:384809007 ! Entire Brodmann area 52, parainsular is_a: UBERON:0013529 ! Brodmann area +xref: UMLS:C1272514 {source="NIF_GrossAnatomy:birnlex_1792"} [Term] id: UBERON:0006487 @@ -135158,6 +135955,8 @@ xref: TAO:0000334 ! corpus mamillare synonym: "corpus mamillare" RELATED LATIN [Wikipedia:Mammillary_body] xref: http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1180.png xref: UMLS:C0024670 +xref: UMLS:C0024670 {source="NIF_GrossAnatomy:birnlex_865"} +xref: UMLS:C1305759 {source="NIF_GrossAnatomy:birnlex_865"} [Term] id: UBERON:0006695 ! mammillary axonal complex @@ -135203,6 +136002,8 @@ relationship: part_of UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region relationship: part_of UBERON:0006695 ! mammillary axonal complex xref: SCTID:369139008 ! Entire mammillothalamic tract of hypothalamus +xref: UMLS:C0228375 {source="NIF_GrossAnatomy:birnlex_855"} +xref: UMLS:C1289566 {source="NIF_GrossAnatomy:birnlex_855"} [Term] id: UBERON:0006697 @@ -135231,6 +136032,7 @@ relationship: part_of UBERON:0006695 ! mammillary axonal complex relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region relationship: continuous_with UBERON:0000988 ! pons relationship: continuous_with UBERON:0001943 ! midbrain tegmentum +xref: UMLS:C0228376 {source="NIF_GrossAnatomy:birnlex_1497"} [Term] id: UBERON:0009635 @@ -135601,6 +136403,7 @@ is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002946 ! regional part of cerebellum relationship: part_of UBERON:0002132 ! dentate nucleus synonym: "paleodentate part of dentate nucleus" EXACT [FMA:72540] +xref: UMLS:C0175486 {source="NIF_GrossAnatomy:birnlex_1490"} [Term] id: UBERON:0006801 @@ -138565,6 +139368,7 @@ relationship: part_of UBERON:0000446 ! septum of telencephalon synonym: "nuclei septales" RELATED LATIN [Wikipedia:Septal_nuclei] relationship: part_of UBERON:0002743 {source="NIFSTD"} ! basal forebrain property_value: external_definition "The septal nuclei are structures in the middle anteroventral cerebrum that are composed of medium-size neurons grouped into medial, lateral, and posterior groups. The septal nuclei receive reciprocal connections from the olfactory bulb, hippocampus, amygdala, hypothalamus, midbrain, habenula, cingulate gyrus, and thalamus. The septal nuclei play a role in reward and reinforcement along with the nucleus accumbens. In the 1950s, Olds & Milner showed that rats with electrodes implanted in this area will self-stimulate repeatedly in order to experience a euphoric feeling (i.e. press a bar to receive electrical current that will stimulate the neurons). [WP,unvetted][Wikipedia:Septal_nuclei]." xsd:string {source="Wikipedia:Septal_nuclei"} +xref: UMLS:C0036687 {source="NIF_GrossAnatomy:birnlex_1313"} [Term] id: UBERON:0007628 ! lateral septal complex @@ -138594,6 +139398,7 @@ intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0007628 ! lateral septal complex relationship: spatially_disjoint_from UBERON:0001878 {source="ABA"} ! septofimbrial nucleus relationship: spatially_disjoint_from UBERON:0007630 {source="ABA"} ! septohippocampal nucleus +xref: UMLS:C0175232 {source="NIF_GrossAnatomy:birnlex_1321"} [Term] id: UBERON:0007629 @@ -138620,6 +139425,7 @@ intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0007629 ! medial septal complex property_value: external_definition "The medial septal nucleus is one of the septal nuclei. It plays a role in the generation of theta waves[Wikipedia:Medial_septal_nucleus]." xsd:string {source="Wikipedia:Medial_septal_nucleus"} property_value: external_definition "A nucleus in the septal area, coextensive with the diagonal band of Broca; it has afferent and cholinergic efferent connections with a variety of forebrain and brain stem areas including the hippocampus, the lateral hypothalamus, the tegmentum, and the amygdaloid bodies[BTO:0002446, Dorlands_Medical_Dictionary:MerckSource]." xsd:string {source="BTO:0002446, Dorlands_Medical_Dictionary:MerckSource"} +xref: UMLS:C0175233 {source="NIF_GrossAnatomy:birnlex_1668"} [Term] id: UBERON:0007630 @@ -142410,6 +143216,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png xref: VHOG:0001700 ! dentate nucleus property_value: homology_notes "One or more deep cerebellar nuclei appear in agnathans, sharks, ropefishes, lungfishes, Latimeria, and amphibians. Reptiles have two nuclei (a medial and a lateral), and birds and mammals have three nuclei (a medial, a lateral, and an interposed nucleus). The medial nucleus of mammals is known as the fastigial nucleus, and the lateral nucleus is known as the dentate nucleus.[well established][VHOG]" xsd:string {external_class="VHOG:0001700", ontology="VHOG", source="ISBN:978-0471210054 Butler AB\, Hodos W\, Comparative vertebrate neuroanatomy: Evolution and Adaptation (2005) p.260-261", source="http://bgee.unil.ch/", date_retrieved="2012-09-17"} relationship: homologous_in NCBITaxon:7742 {source="VHOG:0001700"} ! Vertebrata +xref: UMLS:C0086120 {source="NIF_GrossAnatomy:birnlex_1171"} [Term] id: UBERON:0008998 @@ -146826,6 +147633,7 @@ synonym: "nigrostriatal fibers" RELATED [NIF_GrossAnatomy:birnlex_4107] xref: NeuroNames:491 xref: NIF_GrossAnatomy:birnlex_4107 ! Nigrostriatal tract is_a: UBERON:0007702 {source="NIF_GrossAnatomy"} ! tract of brain +xref: UMLS:C0815010 {source="NIF_GrossAnatomy:birnlex_4107"} [Term] id: UBERON:0014277 @@ -147558,6 +148366,8 @@ xref: SCTID:425300001 ! Entire infundibular stem of neurohypophysis is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002198 {source="NIF_GrossAnatomy"} ! neurohypophysis xref: NIF_GrossAnatomy:birnlex_1248 ! Infundibular stem +xref: UMLS:C0175325 {source="NIF_GrossAnatomy:birnlex_1248"} +xref: UMLS:C0447641 {source="NIF_GrossAnatomy:birnlex_1248"} [Term] id: UBERON:0014607 @@ -147568,6 +148378,8 @@ xref: SCTID:367875001 ! Entire thoracic spinal cord lateral horn intersection_of: UBERON:0004676 ! spinal cord lateral horn intersection_of: part_of UBERON:0003038 ! thoracic spinal cord xref: NIF_GrossAnatomy:birnlex_1397 ! Thoracic spinal cord lateral horn +xref: UMLS:C0228631 {source="NIF_GrossAnatomy:birnlex_1397"} +xref: UMLS:C1288551 {source="NIF_GrossAnatomy:birnlex_1397"} [Term] id: UBERON:0014640 @@ -147576,6 +148388,7 @@ intersection_of: UBERON:0000200 ! gyrus intersection_of: part_of UBERON:0002021 ! occipital lobe xref: NIF_GrossAnatomy:birnlex_747 ! Occipital gyrus is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C1110642 {source="NIF_GrossAnatomy:birnlex_747"} [Term] id: UBERON:0014608 @@ -147585,6 +148398,7 @@ xref: SCTID:279183001 ! Entire inferior occipital gyrus is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0002021 ! occipital lobe xref: NIF_GrossAnatomy:birnlex_1399 ! Inferior occipital gyrus +xref: UMLS:C1110643 {source="NIF_GrossAnatomy:birnlex_1399"} [Term] id: UBERON:0014609 @@ -147595,6 +148409,7 @@ xref: SCTID:362442007 ! Entire thoracic spinal cord posterior horn intersection_of: UBERON:0002256 ! dorsal horn of spinal cord intersection_of: part_of UBERON:0003038 ! thoracic spinal cord xref: NIF_GrossAnatomy:birnlex_1404 ! Thoracic spinal cord dorsal horn +xref: UMLS:C0228628 {source="NIF_GrossAnatomy:birnlex_1404"} [Term] id: UBERON:0014610 @@ -147605,6 +148420,8 @@ xref: SCTID:367876000 ! Entire thoracic spinal cord ventral horn intersection_of: UBERON:0002257 ! ventral horn of spinal cord intersection_of: part_of UBERON:0003038 ! thoracic spinal cord xref: NIF_GrossAnatomy:birnlex_1410 ! Thoracic spinal cord ventral horn +xref: UMLS:C0228632 {source="NIF_GrossAnatomy:birnlex_1410"} +xref: UMLS:C1288552 {source="NIF_GrossAnatomy:birnlex_1410"} [Term] id: UBERON:0014611 @@ -147615,6 +148432,7 @@ is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0014609 ! thoracic spinal cord dorsal horn xref: SCTID:367877009 ! Entire apex of thoracic spinal cord posterior horn xref: NIF_GrossAnatomy:birnlex_1427 ! Apex of thoracic spinal cord dorsal horn +xref: UMLS:C0228629 {source="NIF_GrossAnatomy:birnlex_1427"} [Term] id: UBERON:0014612 @@ -147625,6 +148443,8 @@ intersection_of: UBERON:0002181 ! substantia gelatinosa intersection_of: part_of UBERON:0014609 ! thoracic spinal cord dorsal horn xref: SCTID:367878004 ! Entire substantia gelatinosa of thoracic spinal cord posterior horn xref: NIF_GrossAnatomy:birnlex_1432 ! Substantia gelatinosa of thoracic spinal cord dorsal horn +xref: UMLS:C0228630 {source="NIF_GrossAnatomy:birnlex_1432"} +xref: UMLS:C1288554 {source="NIF_GrossAnatomy:birnlex_1432"} [Term] id: UBERON:0014613 @@ -147634,6 +148454,7 @@ xref: SCTID:362438009 ! Entire cervical spinal cord gray matter intersection_of: UBERON:0002315 ! gray matter of spinal cord intersection_of: part_of UBERON:0002726 ! cervical spinal cord xref: NIF_GrossAnatomy:birnlex_1521 ! Cervical spinal cord gray matter +xref: UMLS:C0228610 {source="NIF_GrossAnatomy:birnlex_1521"} [Term] id: UBERON:0014614 @@ -147643,6 +148464,7 @@ xref: SCTID:174829001 ! Entire cervical spinal cord white matter intersection_of: UBERON:0002318 ! white matter of spinal cord intersection_of: part_of UBERON:0002726 ! cervical spinal cord xref: NIF_GrossAnatomy:birnlex_1531 ! Cervical spinal cord white matter +xref: UMLS:C0228616 {source="NIF_GrossAnatomy:birnlex_1531"} [Term] id: UBERON:0014615 @@ -147662,6 +148484,7 @@ synonym: "posterior nerve root of thoracic spinal cord" RELATED [NIF_GrossAnato xref: SCTID:367883007 ! Entire posterior thoracic spinal cord nerve root is_a: UBERON:0009630 {source="NIF_GrossAnatomy"} ! root of thoracic nerve xref: NIF_GrossAnatomy:birnlex_1601 ! Dorsal nerve root of thoracic spinal cord +xref: UMLS:C1288559 {source="NIF_GrossAnatomy:birnlex_1601"} [Term] id: UBERON:0014617 @@ -147671,6 +148494,7 @@ synonym: "ventral nerve root of thoracic spinal cord" EXACT HUMAN_PREFERRED [NI xref: SCTID:367882002 ! Entire anterior thoracic spinal cord nerve root is_a: UBERON:0009630 {source="NIF_GrossAnatomy"} ! root of thoracic nerve xref: NIF_GrossAnatomy:birnlex_1606 ! Ventral nerve root of thoracic spinal cord +xref: UMLS:C0228639 {source="NIF_GrossAnatomy:birnlex_1606"} [Term] id: UBERON:0014639 @@ -147692,6 +148516,7 @@ xref: NIF_GrossAnatomy:birnlex_1650 ! Middle frontal sulcus is_a: UBERON:0000093 ! sulcus relationship: part_of UBERON:0001870 ! frontal cortex is_a: UBERON:0003022 ! lobe parts of cerebral cortex +xref: UMLS:C0228199 {source="NIF_GrossAnatomy:birnlex_1650"} [Term] id: UBERON:0014619 @@ -147702,6 +148527,8 @@ xref: SCTID:174268004 ! Entire cervical spinal cord lateral horn intersection_of: UBERON:0004676 ! spinal cord lateral horn intersection_of: part_of UBERON:0002726 ! cervical spinal cord xref: NIF_GrossAnatomy:birnlex_1665 ! Cervical spinal cord lateral horn +xref: UMLS:C0228614 {source="NIF_GrossAnatomy:birnlex_1665"} +xref: UMLS:C1278739 {source="NIF_GrossAnatomy:birnlex_1665"} [Term] id: UBERON:0014620 @@ -147712,6 +148539,7 @@ xref: SCTID:362439001 ! Entire cervical spinal cord posterior horn xref: NIF_GrossAnatomy:birnlex_1673 ! Cervical spinal cord dorsal horn intersection_of: UBERON:0002256 ! dorsal horn of spinal cord intersection_of: part_of UBERON:0002726 ! cervical spinal cord +xref: UMLS:C0228611 {source="NIF_GrossAnatomy:birnlex_1673"} [Term] id: UBERON:0014621 @@ -147722,6 +148550,8 @@ intersection_of: UBERON:0002257 ! ventral horn of spinal cord intersection_of: part_of UBERON:0002726 ! cervical spinal cord xref: SCTID:174363005 ! Entire cervical spinal cord ventral horn xref: NIF_GrossAnatomy:birnlex_1680 ! Cervical spinal cord ventral horn +xref: UMLS:C0228615 {source="NIF_GrossAnatomy:birnlex_1680"} +xref: UMLS:C1278740 {source="NIF_GrossAnatomy:birnlex_1680"} [Term] id: UBERON:0014622 @@ -147732,6 +148562,7 @@ is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0014620 ! cervical spinal cord dorsal horn xref: SCTID:174452008 ! Entire apex of cervical spinal cord posterior horn xref: NIF_GrossAnatomy:birnlex_1714 ! Apex of cervical spinal cord dorsal horn +xref: UMLS:C0228612 {source="NIF_GrossAnatomy:birnlex_1714"} [Term] id: UBERON:0014623 @@ -147742,6 +148573,7 @@ xref: SCTID:174544008 ! Entire substantia gelatinosa of cervical spinal cord pos intersection_of: UBERON:0002181 ! substantia gelatinosa intersection_of: part_of UBERON:0014620 ! cervical spinal cord dorsal horn xref: NIF_GrossAnatomy:birnlex_1723 ! Substantia gelatinosa of cervical spinal cord dorsal horn +xref: UMLS:C0228613 {source="NIF_GrossAnatomy:birnlex_1723"} [Term] id: UBERON:0014624 @@ -147753,6 +148585,7 @@ xref: NIF_GrossAnatomy:birnlex_2522 ! Basis modioli is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006723 ! cochlear modiolus xref: FMA:75640 ! Base of modiolus of cochlea +xref: UMLS:C0458781 {source="NIF_GrossAnatomy:birnlex_2522"} [Term] id: UBERON:0014626 @@ -147762,6 +148595,7 @@ xref: SCTID:279778001 ! Base of the cochlear canal is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006106 ! cochlear canal xref: NIF_GrossAnatomy:birnlex_2556 ! Base of the cochlear canal +xref: UMLS:C0458766 {source="NIF_GrossAnatomy:birnlex_2556"} [Term] id: UBERON:0014628 @@ -147771,6 +148605,7 @@ xref: SCTID:279772000 ! Vestibular fissure of the cochlear canal is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006106 ! cochlear canal xref: NIF_GrossAnatomy:birnlex_2558 ! Vestibular fissure of the cochlear canal +xref: UMLS:C0458761 {source="NIF_GrossAnatomy:birnlex_2558"} [Term] id: UBERON:0014629 @@ -147780,6 +148615,7 @@ xref: SCTID:279780007 ! Terminal part of the cochlear canal xref: NIF_GrossAnatomy:birnlex_2559 ! Terminal part of the cochlear canal is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006106 ! cochlear canal +xref: UMLS:C0458768 {source="NIF_GrossAnatomy:birnlex_2559"} [Term] id: UBERON:0014630 @@ -147793,6 +148629,7 @@ relationship: part_of UBERON:0004677 {source="FMA"} ! spinal cord gray commissur xref: FMA:77038 ! ventral gray commissure of spinal cord xref: SCTID:88806005 ! Spinal cord anterior gray commissure xref: NIF_GrossAnatomy:birnlex_2676 ! Spinal cord anterior gray commissure +xref: UMLS:C0228572 {source="NIF_GrossAnatomy:birnlex_2676"} [Term] id: UBERON:0014631 @@ -147806,6 +148643,7 @@ relationship: part_of UBERON:0004677 {source="FMA"} ! spinal cord gray commissur xref: FMA:77037 ! dorsal gray commissure of spinal cord xref: SCTID:21169000 ! Spinal cord posterior gray commissure xref: NIF_GrossAnatomy:birnlex_2677 ! Spinal cord posterior gray commissure +xref: UMLS:C0228573 {source="NIF_GrossAnatomy:birnlex_2677"} [Term] id: UBERON:0014638 ! lumbar spinal cord dorsal horn @@ -147815,6 +148653,7 @@ synonym: "lumbar spinal cord posterior horn" RELATED [NIF_GrossAnatomy:birnlex_ intersection_of: UBERON:0002256 ! dorsal horn of spinal cord intersection_of: part_of UBERON:0002792 ! lumbar spinal cord xref: NIF_GrossAnatomy:birnlex_884 ! Lumbar spinal cord dorsal horn +xref: UMLS:C1282146 {source="NIF_GrossAnatomy:birnlex_884"} [Term] id: UBERON:0014632 @@ -147825,6 +148664,7 @@ is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0014638 ! lumbar spinal cord dorsal horn xref: SCTID:314425003 ! Entire apex of lumbar spinal cord posterior horn xref: NIF_GrossAnatomy:birnlex_811 ! Apex of lumbar spinal cord dorsal horn +xref: UMLS:C0228647 {source="NIF_GrossAnatomy:birnlex_811"} [Term] id: UBERON:0014633 @@ -147835,6 +148675,8 @@ xref: SCTID:314519000 ! Entire substantia gelatinosa of lumbar spinal cord poste intersection_of: UBERON:0002181 ! substantia gelatinosa intersection_of: part_of UBERON:0014638 ! lumbar spinal cord dorsal horn xref: NIF_GrossAnatomy:birnlex_819 ! Substantia gelatinosa of lumbar spinal cord dorsal horn +xref: UMLS:C0228648 {source="NIF_GrossAnatomy:birnlex_819"} +xref: UMLS:C1282211 {source="NIF_GrossAnatomy:birnlex_819"} [Term] id: UBERON:0014634 @@ -147846,6 +148688,7 @@ is_a: UBERON:0009632 {source="NIF_GrossAnatomy"} ! root of cervical nerve intersection_of: UBERON:0002260 ! ventral root of spinal cord intersection_of: overlaps UBERON:0002726 ! cervical spinal cord xref: NIF_GrossAnatomy:birnlex_958 ! Ventral nerve root of cervical spinal cord +xref: UMLS:C1278750 {source="NIF_GrossAnatomy:birnlex_958"} [Term] id: UBERON:0014635 @@ -147857,6 +148700,7 @@ is_a: UBERON:0009632 {source="NIF_GrossAnatomy"} ! root of cervical nerve intersection_of: UBERON:0002261 ! dorsal root of spinal cord intersection_of: overlaps UBERON:0002726 ! cervical spinal cord xref: NIF_GrossAnatomy:birnlex_964 ! Dorsal nerve root of cervical spinal cord +xref: UMLS:C1278751 {source="NIF_GrossAnatomy:birnlex_964"} [Term] id: UBERON:0014636 @@ -147866,6 +148710,7 @@ xref: SCTID:362441000 ! Entire thoracic spinal cord gray matter intersection_of: UBERON:0002315 ! gray matter of spinal cord intersection_of: part_of UBERON:0003038 ! thoracic spinal cord xref: NIF_GrossAnatomy:birnlex_980 ! Thoracic spinal cord gray matter +xref: UMLS:C0228627 {source="NIF_GrossAnatomy:birnlex_980"} [Term] id: UBERON:0014637 @@ -147875,6 +148720,8 @@ xref: SCTID:367881009 ! Entire thoracic spinal cord white matter intersection_of: UBERON:0002318 ! white matter of spinal cord intersection_of: part_of UBERON:0003038 ! thoracic spinal cord xref: NIF_GrossAnatomy:birnlex_999 ! Thoracic spinal cord white matter +xref: UMLS:C0228633 {source="NIF_GrossAnatomy:birnlex_999"} +xref: UMLS:C1288557 {source="NIF_GrossAnatomy:birnlex_999"} [Typedef] id: adjacent_to