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* fixed membranous urethra hierarchy to match MA, with sex-neutral p…

…arent and sex-specific subclasses

     * NTs: mucosa of urethra, ureteral orifice
     * fixed part_of hierarchy such that all muscles and part of some musculature
     * NT: limb paddle
     * Removed extraneous space characters from some text definitions
     * NTs: cloacal and anal folds
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commit e7ddb5facdad91e1445a324d1b566a05ce28cfc9 1 parent 0a7b1ec
Chris Mungall cmungall authored
Showing with 2,754 additions and 893 deletions.
  1. +3 −3 Makefile
  2. +9 −1 bridge/cl-bridge-to-aao.obo
  3. +9 −1 bridge/cl-bridge-to-aao.owl
  4. +1 −1  bridge/cl-bridge-to-bila.obo
  5. +1 −1  bridge/cl-bridge-to-bila.owl
  6. +1 −1  bridge/cl-bridge-to-bspo.obo
  7. +1 −1  bridge/cl-bridge-to-bspo.owl
  8. +1 −1  bridge/cl-bridge-to-caro.obo
  9. +1 −1  bridge/cl-bridge-to-caro.owl
  10. +1 −1  bridge/cl-bridge-to-ehdaa.obo
  11. +1 −1  bridge/cl-bridge-to-ehdaa.owl
  12. +7 −1 bridge/cl-bridge-to-ehdaa2.obo
  13. +7 −1 bridge/cl-bridge-to-ehdaa2.owl
  14. +9 −1 bridge/cl-bridge-to-emapa.obo
  15. +9 −1 bridge/cl-bridge-to-emapa.owl
  16. +7 −1 bridge/cl-bridge-to-fbbt.obo
  17. +7 −1 bridge/cl-bridge-to-fbbt.owl
  18. +8 −1 bridge/cl-bridge-to-fma.obo
  19. +8 −1 bridge/cl-bridge-to-fma.owl
  20. +1 −1  bridge/cl-bridge-to-go.obo
  21. +1 −1  bridge/cl-bridge-to-go.owl
  22. +1 −1  bridge/cl-bridge-to-hao.obo
  23. +1 −1  bridge/cl-bridge-to-hao.owl
  24. +1 −1  bridge/cl-bridge-to-kupo.obo
  25. +1 −1  bridge/cl-bridge-to-kupo.owl
  26. +8 −1 bridge/cl-bridge-to-ma.obo
  27. +8 −1 bridge/cl-bridge-to-ma.owl
  28. +1 −1  bridge/cl-bridge-to-mfo.obo
  29. +1 −1  bridge/cl-bridge-to-mfo.owl
  30. +1 −1  bridge/cl-bridge-to-ncithesaurus.obo
  31. +1 −1  bridge/cl-bridge-to-ncithesaurus.owl
  32. +1 −1  bridge/cl-bridge-to-nif_grossanatomy.obo
  33. +1 −1  bridge/cl-bridge-to-nif_grossanatomy.owl
  34. +1 −1  bridge/cl-bridge-to-og.obo
  35. +1 −1  bridge/cl-bridge-to-og.owl
  36. +1 −1  bridge/cl-bridge-to-spd.obo
  37. +1 −1  bridge/cl-bridge-to-spd.owl
  38. +1 −1  bridge/cl-bridge-to-tads.obo
  39. +1 −1  bridge/cl-bridge-to-tads.owl
  40. +8 −1 bridge/cl-bridge-to-tao.obo
  41. +8 −1 bridge/cl-bridge-to-tao.owl
  42. +1 −1  bridge/cl-bridge-to-tgma.obo
  43. +1 −1  bridge/cl-bridge-to-tgma.owl
  44. +10 −1 bridge/cl-bridge-to-vsao.obo
  45. +10 −1 bridge/cl-bridge-to-vsao.owl
  46. +1 −1  bridge/cl-bridge-to-wbbt.obo
  47. +1 −1  bridge/cl-bridge-to-wbbt.owl
  48. +8 −1 bridge/cl-bridge-to-xao.obo
  49. +8 −1 bridge/cl-bridge-to-xao.owl
  50. +9 −1 bridge/cl-bridge-to-zfa.obo
  51. +9 −1 bridge/cl-bridge-to-zfa.owl
  52. +1 −1  bridge/uberon-bridge-to-aao.obo
  53. +1 −1  bridge/uberon-bridge-to-aao.owl
  54. +1 −1  bridge/uberon-bridge-to-bila.obo
  55. +1 −1  bridge/uberon-bridge-to-bila.owl
  56. +1 −1  bridge/uberon-bridge-to-caro.obo
  57. +1 −1  bridge/uberon-bridge-to-caro.owl
  58. +1 −1  bridge/uberon-bridge-to-ehdaa.obo
  59. +1 −1  bridge/uberon-bridge-to-ehdaa.owl
  60. +11 −1 bridge/uberon-bridge-to-ehdaa2.obo
  61. +33 −1 bridge/uberon-bridge-to-ehdaa2.owl
  62. +2 −17 bridge/uberon-bridge-to-emapa.obo
  63. +1 −25 bridge/uberon-bridge-to-emapa.owl
  64. +1 −1  bridge/uberon-bridge-to-fbbt.obo
  65. +1 −1  bridge/uberon-bridge-to-fbbt.owl
  66. +42 −4 bridge/uberon-bridge-to-fma.obo
  67. +167 −9 bridge/uberon-bridge-to-fma.owl
  68. +1 −1  bridge/uberon-bridge-to-go.obo
  69. +1 −1  bridge/uberon-bridge-to-go.owl
  70. +1 −1  bridge/uberon-bridge-to-hao.obo
  71. +1 −1  bridge/uberon-bridge-to-hao.owl
  72. +15 −3 bridge/uberon-bridge-to-ma.obo
  73. +54 −2 bridge/uberon-bridge-to-ma.owl
  74. +1 −1  bridge/uberon-bridge-to-mfo.obo
  75. +1 −1  bridge/uberon-bridge-to-mfo.owl
  76. +3 −3 bridge/uberon-bridge-to-ncithesaurus.obo
  77. +9 −9 bridge/uberon-bridge-to-ncithesaurus.owl
  78. +1 −1  bridge/uberon-bridge-to-nif_grossanatomy.obo
  79. +1 −1  bridge/uberon-bridge-to-nif_grossanatomy.owl
  80. +1 −1  bridge/uberon-bridge-to-og.obo
  81. +1 −1  bridge/uberon-bridge-to-og.owl
  82. +1 −1  bridge/uberon-bridge-to-spd.obo
  83. +1 −1  bridge/uberon-bridge-to-spd.owl
  84. +1 −1  bridge/uberon-bridge-to-tads.obo
  85. +1 −1  bridge/uberon-bridge-to-tads.owl
  86. +1 −1  bridge/uberon-bridge-to-tao.owl
  87. +1 −1  bridge/uberon-bridge-to-tgma.obo
  88. +1 −1  bridge/uberon-bridge-to-tgma.owl
  89. +1 −1  bridge/uberon-bridge-to-wbbt.obo
  90. +1 −1  bridge/uberon-bridge-to-wbbt.owl
  91. +1 −1  bridge/uberon-bridge-to-xao.obo
  92. +1 −1  bridge/uberon-bridge-to-xao.owl
  93. +1 −1  bridge/uberon-bridge-to-zfa.obo
  94. +1 −1  bridge/uberon-bridge-to-zfa.owl
  95. +6 −0 external-disjoints.obo
  96. +29 −5 reference/references-edit.omn
  97. +373 −144 uberon-simple.obo
  98. +421 −140 uberon-taxmod-amniote.obo
  99. +504 −151 uberon-with-isa.obo
  100. +432 −147 uberon.obo
  101. +420 −146 uberon_edit-implied.obo
6 Makefile
View
@@ -558,7 +558,7 @@ uberon-taxmod-%.obo: uberon-taxmod-%.ids
# ----------------------------------------
# even tho the repo lives in github, release is via svn...
bridge/bridges: bridge/uberon-bridge-to-vhog.owl uberon_edit.obo
- cd mod && ../make-bridge-ontologies-from-xrefs.pl ../uberon_edit.obo && ../make-bridge-ontologies-from-xrefs.pl -b cl ../cl-core.obo && touch bridges
+ cd bridge && ../make-bridge-ontologies-from-xrefs.pl ../uberon_edit.obo && ../make-bridge-ontologies-from-xrefs.pl -b cl ../cl-core.obo && touch bridges
bridge/uberon-bridge-to-vhog.owl: uberon_edit.obo
./util/mk-vhog-individs.pl organ_association_vHOG.txt uberon_edit.obo > $@.ofn && owltools $@.ofn -o file://`pwd`/$@
@@ -566,7 +566,7 @@ bridge/uberon-bridge-to-vhog.owl: uberon_edit.obo
ext-xref.obo:
blip-findall -r pext -r ZFA -i pe/tao-obsoletions.obo "entity_xref(Z,T),entity_replaced_by(T,U),\+id_idspace(Z,'UBERON'),id_idspace(U,'UBERON')" -select U-Z -label -use_tabs -no_pred | tbl2obolinks.pl --rel xref - > $@.tmp && cat ext-ref-hdr.obo $@.tmp > $@
bridge/uberon-ext-bridge-to-zfa.obo: ext-xref.obo
- cd mod && ../make-bridge-ontologies-from-xrefs.pl -b uberon-ext ../ext-xref.obo
+ cd bridge && ../make-bridge-ontologies-from-xrefs.pl -b uberon-ext ../ext-xref.obo
RELDIR=trunk
release:
@@ -588,7 +588,7 @@ release:
cp uberon-taxmod-euarchontoglires.owl $(RELDIR)/subsets/euarchontoglires-basic.owl ;\
cp composite-{vertebrate,metazoan}.{obo,owl} $(RELDIR) ;\
cp reference/*{owl,html} reference/*[0-9] $(RELDIR)/reference ;\
- (cd $(RELDIR)/reference/ && svn add *.owl && svn add reference_[0-9]*) && svn ps svn:mime-type text/html reference_[0-9]* ;\
+ (cd $(RELDIR)/reference/ && svn add *.owl && svn add reference_[0-9]* && svn ps svn:mime-type text/html reference_[0-9]*) ;\
echo done ;\
# cd $(RELDIR) && svn commit -m ''
10 bridge/cl-bridge-to-aao.obo
View
@@ -1,6 +1,14 @@
ontology: uberon/bridge/cl-bridge-to-aao
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
+property_value: dc-title "CL bridge to aao" xsd:string
+property_value: dc-description "Equivalence axioms between AAO and CL. Note that AAO is in the process of being merged into the core CL, so this mapping will become deprecated" xsd:string
+property_value: dc-creator "CL editors" xsd:string
+property_value: dc-creator "David Blackburn" xsd:string
+property_value: dc-contributor "Erik Segerdell" xsd:string
+property_value: dc-contributor "Paula Mabee" xsd:string
+property_value: dcterms-references http://purl.obolibrary.org/obo/aao.owl
+property_value: dcterms-references http://purl.obolibrary.org/obo/cl.owl
[Term]
id: AAO:ENTITY
10 bridge/cl-bridge-to-aao.owl
View
@@ -12,8 +12,16 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao.owl">
+ <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL bridge to aao</dc:title>
+ <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>
+ <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">David Blackburn</dc:creator>
+ <dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Equivalence axioms between AAO and CL. Note that AAO is in the process of being merged into the core CL, so this mapping will become deprecated</dc:description>
+ <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Erik Segerdell</dc:contributor>
+ <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Paula Mabee</dc:contributor>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao/2012-11-20/uberon/bridge/cl-bridge-to-aao.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/aao.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao/2012-11-25/uberon/bridge/cl-bridge-to-aao.owl"/>
</owl:Ontology>
2  bridge/cl-bridge-to-bila.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-bila
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Typedef]
2  bridge/cl-bridge-to-bila.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila/2012-11-20/uberon/bridge/cl-bridge-to-bila.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila/2012-11-25/uberon/bridge/cl-bridge-to-bila.owl"/>
</owl:Ontology>
2  bridge/cl-bridge-to-bspo.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-bspo
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Typedef]
2  bridge/cl-bridge-to-bspo.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo/2012-11-20/uberon/bridge/cl-bridge-to-bspo.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo/2012-11-25/uberon/bridge/cl-bridge-to-bspo.owl"/>
</owl:Ontology>
2  bridge/cl-bridge-to-caro.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-caro
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/cl-bridge-to-caro.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro/2012-11-20/uberon/bridge/cl-bridge-to-caro.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro/2012-11-25/uberon/bridge/cl-bridge-to-caro.owl"/>
</owl:Ontology>
2  bridge/cl-bridge-to-ehdaa.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-ehdaa
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Typedef]
2  bridge/cl-bridge-to-ehdaa.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa/2012-11-20/uberon/bridge/cl-bridge-to-ehdaa.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa/2012-11-25/uberon/bridge/cl-bridge-to-ehdaa.owl"/>
</owl:Ontology>
8 bridge/cl-bridge-to-ehdaa2.obo
View
@@ -1,6 +1,12 @@
ontology: uberon/bridge/cl-bridge-to-ehdaa2
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
+property_value: dc-title "CL bridge to ehdaa2" xsd:string
+property_value: dc-description "Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA" xsd:string
+property_value: dc-creator "CL editors" xsd:string
+property_value: dc-contributor "Jonathan Bard" xsd:string
+property_value: dcterms-references http://purl.obolibrary.org/obo/ehdaa2.owl
+property_value: dcterms-references http://purl.obolibrary.org/obo/cl.owl
[Term]
id: EHDAA2:0001053 !
8 bridge/cl-bridge-to-ehdaa2.owl
View
@@ -12,8 +12,14 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2.owl">
+ <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL bridge to ehdaa2</dc:title>
+ <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>
+ <dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA</dc:description>
+ <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Jonathan Bard</dc:contributor>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2/2012-11-20/uberon/bridge/cl-bridge-to-ehdaa2.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/ehdaa2.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2/2012-11-25/uberon/bridge/cl-bridge-to-ehdaa2.owl"/>
</owl:Ontology>
10 bridge/cl-bridge-to-emapa.obo
View
@@ -1,6 +1,14 @@
ontology: uberon/bridge/cl-bridge-to-emapa
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
+property_value: dc-title "CL bridge to emapa" xsd:string
+property_value: dc-description "Taxonomic equivalence axioms between EMAPA (abstract developmental mouse) and CL" xsd:string
+property_value: dc-creator "CL editors" xsd:string
+property_value: dc-creator "vHOG editors" xsd:string
+property_value: dc-creator "Aurelie Comte" xsd:string
+property_value: dc-creator "Anne Niknejad" xsd:string
+property_value: dcterms-references http://purl.obolibrary.org/obo/fma.owl
+property_value: dcterms-references http://purl.obolibrary.org/obo/cl.owl
[Term]
id: EMAPA:31484 !
10 bridge/cl-bridge-to-emapa.owl
View
@@ -12,8 +12,16 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa.owl">
+ <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Anne Niknejad</dc:creator>
+ <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Aurelie Comte</dc:creator>
+ <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL bridge to emapa</dc:title>
+ <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>
+ <dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Taxonomic equivalence axioms between EMAPA (abstract developmental mouse) and CL</dc:description>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa/2012-11-20/uberon/bridge/cl-bridge-to-emapa.owl"/>
+ <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">vHOG editors</dc:creator>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/fma.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa/2012-11-25/uberon/bridge/cl-bridge-to-emapa.owl"/>
</owl:Ontology>
8 bridge/cl-bridge-to-fbbt.obo
View
@@ -1,6 +1,12 @@
ontology: uberon/bridge/cl-bridge-to-fbbt
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
+property_value: dc-title "CL bridge to fbbt" xsd:string
+property_value: dc-description "Taxonomic equivalence axioms between the drosophila anatomy ontology and CL. Note that currently CL focuses on chordate anatomy so there are only a minimal set of equivalencies for high level classes. In future CL may bridge via the arthropod anatomy ontology" xsd:string
+property_value: dc-creator "CL editors" xsd:string
+property_value: dc-contributor "David Osumi-Sutherland" xsd:string
+property_value: dcterms-references http://purl.obolibrary.org/obo/fbbt.owl
+property_value: dcterms-references http://purl.obolibrary.org/obo/cl.owl
[Term]
id: FBbt:00004936 !
8 bridge/cl-bridge-to-fbbt.owl
View
@@ -12,8 +12,14 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt.owl">
+ <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL bridge to fbbt</dc:title>
+ <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>
+ <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">David Osumi-Sutherland</dc:contributor>
+ <dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Taxonomic equivalence axioms between the drosophila anatomy ontology and CL. Note that currently CL focuses on chordate anatomy so there are only a minimal set of equivalencies for high level classes. In future CL may bridge via the arthropod anatomy ontology</dc:description>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt/2012-11-20/uberon/bridge/cl-bridge-to-fbbt.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/fbbt.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt/2012-11-25/uberon/bridge/cl-bridge-to-fbbt.owl"/>
</owl:Ontology>
9 bridge/cl-bridge-to-fma.obo
View
@@ -1,6 +1,13 @@
ontology: uberon/bridge/cl-bridge-to-fma
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
+property_value: dc-title "CL bridge to fma" xsd:string
+property_value: dc-description "Taxonomic equivalence axioms between the FMA and CL" xsd:string
+property_value: dc-creator "CL editors" xsd:string
+property_value: dc-contributor "Onard Mejino" xsd:string
+property_value: dc-contributor "Terry Hayamizu" xsd:string
+property_value: dcterms-references http://purl.obolibrary.org/obo/fma.owl
+property_value: dcterms-references http://purl.obolibrary.org/obo/cl.owl
[Term]
id: FMA:68646 !
9 bridge/cl-bridge-to-fma.owl
View
@@ -12,8 +12,15 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fma.owl">
+ <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL bridge to fma</dc:title>
+ <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>
+ <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Onard Mejino</dc:contributor>
+ <dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Taxonomic equivalence axioms between the FMA and CL</dc:description>
+ <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Terry Hayamizu</dc:contributor>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fma/2012-11-20/uberon/bridge/cl-bridge-to-fma.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/fma.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fma/2012-11-25/uberon/bridge/cl-bridge-to-fma.owl"/>
</owl:Ontology>
2  bridge/cl-bridge-to-go.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-go
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/cl-bridge-to-go.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-go.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-go/2012-11-20/uberon/bridge/cl-bridge-to-go.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-go/2012-11-25/uberon/bridge/cl-bridge-to-go.owl"/>
</owl:Ontology>
2  bridge/cl-bridge-to-hao.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-hao
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/cl-bridge-to-hao.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-hao.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-hao/2012-11-20/uberon/bridge/cl-bridge-to-hao.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-hao/2012-11-25/uberon/bridge/cl-bridge-to-hao.owl"/>
</owl:Ontology>
2  bridge/cl-bridge-to-kupo.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-kupo
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/cl-bridge-to-kupo.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo/2012-11-20/uberon/bridge/cl-bridge-to-kupo.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo/2012-11-25/uberon/bridge/cl-bridge-to-kupo.owl"/>
</owl:Ontology>
9 bridge/cl-bridge-to-ma.obo
View
@@ -1,6 +1,13 @@
ontology: uberon/bridge/cl-bridge-to-ma
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
+property_value: dc-title "CL bridge to ma" xsd:string
+property_value: dc-description "Taxonomic equivalence axioms between adult moouse anatomy and CL" xsd:string
+property_value: dc-creator "CL editors" xsd:string
+property_value: dc-creator "Terry Hayamizu" xsd:string
+property_value: dc-contributor "George Gkoutos" xsd:string
+property_value: dcterms-references http://purl.obolibrary.org/obo/ma.owl
+property_value: dcterms-references http://purl.obolibrary.org/obo/cl.owl
[Term]
id: MA:0002765 !
9 bridge/cl-bridge-to-ma.owl
View
@@ -12,8 +12,15 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ma.owl">
+ <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL bridge to ma</dc:title>
+ <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>
+ <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">George Gkoutos</dc:contributor>
+ <dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Taxonomic equivalence axioms between adult moouse anatomy and CL</dc:description>
+ <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Terry Hayamizu</dc:creator>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ma/2012-11-20/uberon/bridge/cl-bridge-to-ma.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/ma.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ma/2012-11-25/uberon/bridge/cl-bridge-to-ma.owl"/>
</owl:Ontology>
2  bridge/cl-bridge-to-mfo.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-mfo
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/cl-bridge-to-mfo.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-mfo.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-mfo/2012-11-20/uberon/bridge/cl-bridge-to-mfo.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-mfo/2012-11-25/uberon/bridge/cl-bridge-to-mfo.owl"/>
</owl:Ontology>
2  bridge/cl-bridge-to-ncithesaurus.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-ncithesaurus
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/cl-bridge-to-ncithesaurus.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ncithesaurus.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ncithesaurus/2012-11-20/uberon/bridge/cl-bridge-to-ncithesaurus.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ncithesaurus/2012-11-25/uberon/bridge/cl-bridge-to-ncithesaurus.owl"/>
</owl:Ontology>
2  bridge/cl-bridge-to-nif_grossanatomy.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-nif_grossanatomy
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Typedef]
2  bridge/cl-bridge-to-nif_grossanatomy.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-nif_grossanatomy.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-nif_grossanatomy/2012-11-20/uberon/bridge/cl-bridge-to-nif_grossanatomy.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-nif_grossanatomy/2012-11-25/uberon/bridge/cl-bridge-to-nif_grossanatomy.owl"/>
</owl:Ontology>
2  bridge/cl-bridge-to-og.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-og
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Typedef]
2  bridge/cl-bridge-to-og.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-og.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-og/2012-11-20/uberon/bridge/cl-bridge-to-og.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-og/2012-11-25/uberon/bridge/cl-bridge-to-og.owl"/>
</owl:Ontology>
2  bridge/cl-bridge-to-spd.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-spd
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/cl-bridge-to-spd.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-spd.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-spd/2012-11-20/uberon/bridge/cl-bridge-to-spd.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-spd/2012-11-25/uberon/bridge/cl-bridge-to-spd.owl"/>
</owl:Ontology>
2  bridge/cl-bridge-to-tads.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-tads
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/cl-bridge-to-tads.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tads.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tads/2012-11-20/uberon/bridge/cl-bridge-to-tads.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tads/2012-11-25/uberon/bridge/cl-bridge-to-tads.owl"/>
</owl:Ontology>
9 bridge/cl-bridge-to-tao.obo
View
@@ -1,6 +1,13 @@
ontology: uberon/bridge/cl-bridge-to-tao
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
+property_value: dc-title "CL bridge to tao" xsd:string
+property_value: dc-description "Taxonomic equivalence axioms between TAO and CL. Note that TAO is in the process of being merged into the core CL, so this mapping will become deprecated" xsd:string
+property_value: dc-creator "CL editors" xsd:string
+property_value: dc-contributor "Wasila Dahdul" xsd:string
+property_value: dc-contributor "Paula Mabee" xsd:string
+property_value: dcterms-references http://purl.obolibrary.org/obo/tao.owl
+property_value: dcterms-references http://purl.obolibrary.org/obo/cl.owl
[Term]
id: TAO:ENTITY
9 bridge/cl-bridge-to-tao.owl
View
@@ -12,8 +12,15 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tao.owl">
+ <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL bridge to tao</dc:title>
+ <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>
+ <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Paula Mabee</dc:contributor>
+ <dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Taxonomic equivalence axioms between TAO and CL. Note that TAO is in the process of being merged into the core CL, so this mapping will become deprecated</dc:description>
+ <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wasila Dahdul</dc:contributor>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tao/2012-11-20/uberon/bridge/cl-bridge-to-tao.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/tao.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tao/2012-11-25/uberon/bridge/cl-bridge-to-tao.owl"/>
</owl:Ontology>
2  bridge/cl-bridge-to-tgma.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-tgma
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/cl-bridge-to-tgma.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tgma.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tgma/2012-11-20/uberon/bridge/cl-bridge-to-tgma.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-tgma/2012-11-25/uberon/bridge/cl-bridge-to-tgma.owl"/>
</owl:Ontology>
11 bridge/cl-bridge-to-vsao.obo
View
@@ -1,6 +1,15 @@
ontology: uberon/bridge/cl-bridge-to-vsao
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
+property_value: dc-title "CL bridge to vsao" xsd:string
+property_value: dc-description "Equivalence axioms between VSAO and CL. Note that VSAO is in the process of being merged into the core CL, so this mapping will become deprecated" xsd:string
+property_value: dc-creator "CL editors" xsd:string
+property_value: dc-creator "Melissa Haendel" xsd:string
+property_value: dc-creator "Wasila Dahdul" xsd:string
+property_value: dc-contributor "Paula Mabee" xsd:string
+property_value: dc-contributor "Alexander Diehl" xsd:string
+property_value: dcterms-references http://purl.obolibrary.org/obo/vsao.owl
+property_value: dcterms-references http://purl.obolibrary.org/obo/cl.owl
[Term]
id: VSAO:0000124 !
11 bridge/cl-bridge-to-vsao.owl
View
@@ -12,8 +12,17 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-vsao.owl">
+ <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alexander Diehl</dc:contributor>
+ <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL bridge to vsao</dc:title>
+ <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>
+ <dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Equivalence axioms between VSAO and CL. Note that VSAO is in the process of being merged into the core CL, so this mapping will become deprecated</dc:description>
+ <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Melissa Haendel</dc:creator>
+ <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Paula Mabee</dc:contributor>
+ <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wasila Dahdul</dc:creator>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-vsao/2012-11-20/uberon/bridge/cl-bridge-to-vsao.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/vsao.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-vsao/2012-11-25/uberon/bridge/cl-bridge-to-vsao.owl"/>
</owl:Ontology>
2  bridge/cl-bridge-to-wbbt.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-wbbt
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/cl-bridge-to-wbbt.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-wbbt.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-wbbt/2012-11-20/uberon/bridge/cl-bridge-to-wbbt.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-wbbt/2012-11-25/uberon/bridge/cl-bridge-to-wbbt.owl"/>
</owl:Ontology>
9 bridge/cl-bridge-to-xao.obo
View
@@ -1,6 +1,13 @@
ontology: uberon/bridge/cl-bridge-to-xao
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
+property_value: dc-title "CL bridge to xao" xsd:string
+property_value: dc-description "Taxonomic equivalence axioms between XAO and CL" xsd:string
+property_value: dc-creator "CL editors" xsd:string
+property_value: dc-contributor "Erik Segerdell" xsd:string
+property_value: dc-contributor "VG Ponferrada" xsd:string
+property_value: dcterms-references http://purl.obolibrary.org/obo/xao.owl
+property_value: dcterms-references http://purl.obolibrary.org/obo/cl.owl
[Term]
id: XAO:0003012 !
9 bridge/cl-bridge-to-xao.owl
View
@@ -12,8 +12,15 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-xao.owl">
+ <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL bridge to xao</dc:title>
+ <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>
+ <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Erik Segerdell</dc:contributor>
+ <dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Taxonomic equivalence axioms between XAO and CL</dc:description>
+ <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VG Ponferrada</dc:contributor>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-xao/2012-11-20/uberon/bridge/cl-bridge-to-xao.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/xao.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-xao/2012-11-25/uberon/bridge/cl-bridge-to-xao.owl"/>
</owl:Ontology>
10 bridge/cl-bridge-to-zfa.obo
View
@@ -1,6 +1,14 @@
ontology: uberon/bridge/cl-bridge-to-zfa
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
+property_value: dc-title "CL bridge to zfa" xsd:string
+property_value: dc-description "Taxonomic equivalence axioms between ZFA and CL" xsd:string
+property_value: dc-creator "CL editors" xsd:string
+property_value: dc-contributor "Ceri Van Slyke" xsd:string
+property_value: dc-contributor "Yvonne Bradford" xsd:string
+property_value: dc-contributor "Melissa Haendel" xsd:string
+property_value: dcterms-references http://purl.obolibrary.org/obo/zfa.owl
+property_value: dcterms-references http://purl.obolibrary.org/obo/cl.owl
[Term]
id: ZFA:0000688 !
10 bridge/cl-bridge-to-zfa.owl
View
@@ -12,8 +12,16 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-zfa.owl">
+ <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL bridge to zfa</dc:title>
+ <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>
+ <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Ceri Van Slyke</dc:contributor>
+ <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Melissa Haendel</dc:contributor>
+ <dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Taxonomic equivalence axioms between ZFA and CL</dc:description>
+ <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Yvonne Bradford</dc:contributor>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-zfa/2012-11-20/uberon/bridge/cl-bridge-to-zfa.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/cl.owl"/>
+ <terms:references rdf:resource="http://purl.obolibrary.org/obo/zfa.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-zfa/2012-11-25/uberon/bridge/cl-bridge-to-zfa.owl"/>
</owl:Ontology>
2  bridge/uberon-bridge-to-aao.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-aao
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "Uberon bridge to aao" xsd:string
property_value: dc-description "Equivalence axioms between AAO and Uberon. Note that AAO is in the process of being merged into the core Uberon, so this mapping will become deprecated" xsd:string
2  bridge/uberon-bridge-to-aao.owl
View
@@ -21,7 +21,7 @@
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/aao.owl"/>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aao/2012-11-20/uberon/bridge/uberon-bridge-to-aao.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-aao/2012-11-25/uberon/bridge/uberon-bridge-to-aao.owl"/>
</owl:Ontology>
2  bridge/uberon-bridge-to-bila.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-bila
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/uberon-bridge-to-bila.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-bila.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-bila/2012-11-20/uberon/bridge/uberon-bridge-to-bila.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-bila/2012-11-25/uberon/bridge/uberon-bridge-to-bila.owl"/>
</owl:Ontology>
2  bridge/uberon-bridge-to-caro.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-caro
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/uberon-bridge-to-caro.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-caro.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-caro/2012-11-20/uberon/bridge/uberon-bridge-to-caro.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-caro/2012-11-25/uberon/bridge/uberon-bridge-to-caro.owl"/>
</owl:Ontology>
2  bridge/uberon-bridge-to-ehdaa.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-ehdaa
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/uberon-bridge-to-ehdaa.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa/2012-11-20/uberon/bridge/uberon-bridge-to-ehdaa.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa/2012-11-25/uberon/bridge/uberon-bridge-to-ehdaa.owl"/>
</owl:Ontology>
12 bridge/uberon-bridge-to-ehdaa2.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-ehdaa2
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "Uberon bridge to ehdaa2" xsd:string
property_value: dc-description "Equivalence axioms between EHDAA2 and Uberon. EHDAA2 replaces EHDAA" xsd:string
@@ -3829,6 +3829,16 @@ property_value: IAO:0000589 "genital ridge (embryonic human)" xsd:string
is_a: UBERON:0005294 ! genital ridge
[Term]
+id: EHDAA2:0004009 ! cloacal fold
+property_value: IAO:0000589 "embryonic cloacal fold (embryonic human)" xsd:string
+is_a: UBERON:0012292 ! embryonic cloacal fold
+
+[Term]
+id: EHDAA2:0004012 ! anal fold
+property_value: IAO:0000589 "anal fold (embryonic human)" xsd:string
+is_a: UBERON:0012293 ! anal fold
+
+[Term]
id: EHDAA2:0004621 ! pharyngeal arch endoderm
property_value: IAO:0000589 "entire pharyngeal arch endoderm (embryonic human)" xsd:string
is_a: UBERON:0009722 ! entire pharyngeal arch endoderm
34 bridge/uberon-bridge-to-ehdaa2.owl
View
@@ -19,7 +19,7 @@
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/ehdaa2.owl"/>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa2/2012-11-20/uberon/bridge/uberon-bridge-to-ehdaa2.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ehdaa2/2012-11-25/uberon/bridge/uberon-bridge-to-ehdaa2.owl"/>
</owl:Ontology>
@@ -12537,6 +12537,26 @@
+ <!-- http://purl.obolibrary.org/obo/EHDAA2_0004009 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/EHDAA2_0004009">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0012292"/>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EHDAA2:0004009</oboInOwl:id>
+ <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">embryonic cloacal fold (embryonic human)</obo:IAO_0000589>
+ </owl:Class>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/EHDAA2_0004012 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/EHDAA2_0004012">
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0012293"/>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EHDAA2:0004012</oboInOwl:id>
+ <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anal fold (embryonic human)</obo:IAO_0000589>
+ </owl:Class>
+
+
+
<!-- http://purl.obolibrary.org/obo/EHDAA2_0004015 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/EHDAA2_0004015">
@@ -22792,6 +22812,18 @@
<!-- http://purl.obolibrary.org/obo/UBERON_0012287 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0012287"/>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0012292 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0012292"/>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0012293 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0012293"/>
</rdf:RDF>
19 bridge/uberon-bridge-to-emapa.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-emapa
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "Uberon bridge to emapa" xsd:string
property_value: dc-description "Taxonomic equivalence axioms between EMAPA (abstract developmental mouse) and Uberon" xsd:string
@@ -3011,16 +3011,6 @@ property_value: IAO:0000589 "carotid body (embryonic mouse)" xsd:string
is_a: UBERON:0001629 ! carotid body
[Term]
-id: EMAPA:18923 ! muscle of perineal body of gut (also: UBERON:0001135 'smooth muscle tissue') (also: UBERON:0002379 'perineal muscle') (also: UBERON:0004486 'musculature of perineum')
-property_value: IAO:0000589 "muscle organ (embryonic mouse)" xsd:string
-is_a: UBERON:0001630 ! muscle organ
-
-[Term]
-id: EMAPA:18923 ! muscle of perineal body of gut (also: UBERON:0001630 'muscle organ') (also: UBERON:0002379 'perineal muscle') (also: UBERON:0004486 'musculature of perineum')
-property_value: IAO:0000589 "smooth muscle tissue (embryonic mouse)" xsd:string
-is_a: UBERON:0001135 ! smooth muscle tissue
-
-[Term]
id: EMAPA:19310 ! thoracic duct
property_value: IAO:0000589 "thoracic duct (embryonic mouse)" xsd:string
is_a: UBERON:0001631 ! thoracic duct
@@ -5306,11 +5296,6 @@ property_value: IAO:0000589 "muscle of head (embryonic mouse)" xsd:string
is_a: UBERON:0002376 ! muscle of head
[Term]
-id: EMAPA:18923 ! muscle of perineal body of gut (also: UBERON:0001630 'muscle organ') (also: UBERON:0001135 'smooth muscle tissue') (also: UBERON:0004486 'musculature of perineum')
-property_value: IAO:0000589 "perineal muscle (embryonic mouse)" xsd:string
-is_a: UBERON:0002379 ! perineal muscle
-
-[Term]
id: EMAPA:18183 ! trapezius
property_value: IAO:0000589 "trapezius (embryonic mouse)" xsd:string
is_a: UBERON:0002380 ! trapezius
@@ -8581,7 +8566,7 @@ property_value: IAO:0000589 "pectoralis major (embryonic mouse)" xsd:string
is_a: UBERON:0002381 ! pectoralis major
[Term]
-id: EMAPA:18923 ! muscle of perineal body of gut (also: UBERON:0001630 'muscle organ') (also: UBERON:0001135 'smooth muscle tissue') (also: UBERON:0002379 'perineal muscle')
+id: EMAPA:18923 ! muscle of perineal body of gut
property_value: IAO:0000589 "musculature of perineum (embryonic mouse)" xsd:string
is_a: UBERON:0004486 ! musculature of perineum
26 bridge/uberon-bridge-to-emapa.owl
View
@@ -21,7 +21,7 @@
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">vHOG editors</dc:creator>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/fma.owl"/>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-emapa/2012-11-20/uberon/bridge/uberon-bridge-to-emapa.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-emapa/2012-11-25/uberon/bridge/uberon-bridge-to-emapa.owl"/>
</owl:Ontology>
@@ -17354,15 +17354,9 @@
<!-- http://purl.obolibrary.org/obo/EMAPA_18923 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/EMAPA_18923">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001135"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001630"/>
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002379"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0004486"/>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EMAPA:18923</oboInOwl:id>
- <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">muscle organ (embryonic mouse)</obo:IAO_0000589>
<obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">musculature of perineum (embryonic mouse)</obo:IAO_0000589>
- <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">perineal muscle (embryonic mouse)</obo:IAO_0000589>
- <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">smooth muscle tissue (embryonic mouse)</obo:IAO_0000589>
</owl:Class>
@@ -25417,12 +25411,6 @@
- <!-- http://purl.obolibrary.org/obo/UBERON_0001135 -->
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001135"/>
-
-
-
<!-- http://purl.obolibrary.org/obo/UBERON_0001138 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001138"/>
@@ -26521,12 +26509,6 @@
- <!-- http://purl.obolibrary.org/obo/UBERON_0001630 -->
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001630"/>
-
-
-
<!-- http://purl.obolibrary.org/obo/UBERON_0001631 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001631"/>
@@ -27967,12 +27949,6 @@
- <!-- http://purl.obolibrary.org/obo/UBERON_0002379 -->
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0002379"/>
-
-
-
<!-- http://purl.obolibrary.org/obo/UBERON_0002380 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0002380"/>
2  bridge/uberon-bridge-to-fbbt.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-fbbt
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "Uberon bridge to fbbt" xsd:string
property_value: dc-description "Taxonomic equivalence axioms between the drosophila anatomy ontology and Uberon. Note that currently Uberon focuses on chordate anatomy so there are only a minimal set of equivalencies for high level classes. In future Uberon may bridge via the arthropod anatomy ontology" xsd:string
2  bridge/uberon-bridge-to-fbbt.owl
View
@@ -19,7 +19,7 @@
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/fbbt.owl"/>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-fbbt/2012-11-20/uberon/bridge/uberon-bridge-to-fbbt.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-fbbt/2012-11-25/uberon/bridge/uberon-bridge-to-fbbt.owl"/>
</owl:Ontology>
46 bridge/uberon-bridge-to-fma.obo
View
@@ -1,9 +1,11 @@
ontology: uberon/bridge/uberon-bridge-to-fma
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "Uberon bridge to fma" xsd:string
property_value: dc-description "Taxonomic equivalence axioms between the FMA and Uberon" xsd:string
property_value: dc-creator "Uberon editors" xsd:string
+property_value: dc-contributor "Onard Mejino" xsd:string
+property_value: dc-contributor "Terry Hayamizu" xsd:string
property_value: dcterms-references http://purl.obolibrary.org/obo/fma.owl
property_value: dcterms-references http://purl.obolibrary.org/obo/uberon.owl
@@ -5342,9 +5344,9 @@ intersection_of: UBERON:0001335 ! prostatic urethra
intersection_of: part_of NCBITaxon:9606
[Term]
-id: FMA:19674 ! Membranous urethra
-property_value: IAO:0000589 "membranous urethra (post-embryonic human)" xsd:string
-intersection_of: UBERON:0001336 ! membranous urethra
+id: FMA:19674 ! membranous urethra
+property_value: IAO:0000589 "male membranous urethra (post-embryonic human)" xsd:string
+intersection_of: UBERON:0012302 ! male membranous urethra
intersection_of: part_of NCBITaxon:9606
[Term]
@@ -5354,6 +5356,36 @@ intersection_of: UBERON:0001337 ! spongiose part of urethra
intersection_of: part_of NCBITaxon:9606
[Term]
+id: FMA:19722 ! navicular fossa of spongiose part of urethra
+property_value: IAO:0000589 "navicular fossa of spongiose part of urethra (post-embryonic human)" xsd:string
+intersection_of: UBERON:0012294 ! navicular fossa of spongiose part of urethra
+intersection_of: part_of NCBITaxon:9606
+
+[Term]
+id: FMA:19718 ! urethral crest
+property_value: IAO:0000589 "urethral crest (post-embryonic human)" xsd:string
+intersection_of: UBERON:0012296 ! urethral crest
+intersection_of: part_of NCBITaxon:9606
+
+[Term]
+id: FMA:85270 ! urethral crest (male)
+property_value: IAO:0000589 "male urethral crest (post-embryonic human)" xsd:string
+intersection_of: UBERON:0012297 ! male urethral crest
+intersection_of: part_of NCBITaxon:9606
+
+[Term]
+id: FMA:85271 ! urethral crest (female)
+property_value: IAO:0000589 "female urethral crest (post-embryonic human)" xsd:string
+intersection_of: UBERON:0012298 ! female urethral crest
+intersection_of: part_of NCBITaxon:9606
+
+[Term]
+id: FMA:76904 ! mucosa of urethra
+property_value: IAO:0000589 "mucosa of urethra (post-embryonic human)" xsd:string
+intersection_of: UBERON:0012299 ! mucosa of urethra
+intersection_of: part_of NCBITaxon:9606
+
+[Term]
id: FMA:19650 ! external urethral orifice
property_value: IAO:0000589 "urethral meatus (post-embryonic human)" xsd:string
intersection_of: UBERON:0012240 ! urethral meatus
@@ -5378,6 +5410,12 @@ intersection_of: UBERON:0012242 ! internal urethral orifice
intersection_of: part_of NCBITaxon:9606
[Term]
+id: FMA:77047 ! ureteral orifice
+property_value: IAO:0000589 "ureteral orifice (post-embryonic human)" xsd:string
+intersection_of: UBERON:0012303 ! ureteral orifice
+intersection_of: part_of NCBITaxon:9606
+
+[Term]
id: FMA:66318 ! Artery of penis
property_value: IAO:0000589 "common penile artery (post-embryonic human)" xsd:string
intersection_of: UBERON:0008320 ! common penile artery
176 bridge/uberon-bridge-to-fma.owl
View
@@ -12,13 +12,15 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-fma.owl">
+ <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Onard Mejino</dc:contributor>
<dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Taxonomic equivalence axioms between the FMA and Uberon</dc:description>
+ <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Terry Hayamizu</dc:contributor>
<dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Uberon bridge to fma</dc:title>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Uberon editors</dc:creator>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/fma.owl"/>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-fma/2012-11-20/uberon/bridge/uberon-bridge-to-fma.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-fma/2012-11-25/uberon/bridge/uberon-bridge-to-fma.owl"/>
</owl:Ontology>
@@ -13642,7 +13644,7 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
- <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0001336"/>
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0012302"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
@@ -13651,7 +13653,7 @@
</owl:Class>
</owl:equivalentClass>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:19674</oboInOwl:id>
- <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">membranous urethra (post-embryonic human)</obo:IAO_0000589>
+ <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">male membranous urethra (post-embryonic human)</obo:IAO_0000589>
</owl:Class>
@@ -13736,6 +13738,46 @@
+ <!-- http://purl.obolibrary.org/obo/FMA_19718 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/FMA_19718">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0012296"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:19718</oboInOwl:id>
+ <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">urethral crest (post-embryonic human)</obo:IAO_0000589>
+ </owl:Class>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/FMA_19722 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/FMA_19722">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0012294"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:19722</oboInOwl:id>
+ <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">navicular fossa of spongiose part of urethra (post-embryonic human)</obo:IAO_0000589>
+ </owl:Class>
+
+
+
<!-- http://purl.obolibrary.org/obo/FMA_19729 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/FMA_19729">
@@ -76286,6 +76328,26 @@
+ <!-- http://purl.obolibrary.org/obo/FMA_76904 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/FMA_76904">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0012299"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:76904</oboInOwl:id>
+ <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mucosa of urethra (post-embryonic human)</obo:IAO_0000589>
+ </owl:Class>
+
+
+
<!-- http://purl.obolibrary.org/obo/FMA_76909 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/FMA_76909">
@@ -76606,6 +76668,26 @@
+ <!-- http://purl.obolibrary.org/obo/FMA_77047 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/FMA_77047">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0012303"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:77047</oboInOwl:id>
+ <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ureteral orifice (post-embryonic human)</obo:IAO_0000589>
+ </owl:Class>
+
+
+
<!-- http://purl.obolibrary.org/obo/FMA_77053 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/FMA_77053">
@@ -83828,6 +83910,46 @@
+ <!-- http://purl.obolibrary.org/obo/FMA_85270 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/FMA_85270">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0012297"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:85270</oboInOwl:id>
+ <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">male urethral crest (post-embryonic human)</obo:IAO_0000589>
+ </owl:Class>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/FMA_85271 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/FMA_85271">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0012298"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:85271</oboInOwl:id>
+ <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">female urethral crest (post-embryonic human)</obo:IAO_0000589>
+ </owl:Class>
+
+
+
<!-- http://purl.obolibrary.org/obo/FMA_85272 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/FMA_85272">
@@ -92272,12 +92394,6 @@
- <!-- http://purl.obolibrary.org/obo/UBERON_0001336 -->
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001336"/>
-
-
-
<!-- http://purl.obolibrary.org/obo/UBERON_0001337 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001337"/>
@@ -115024,6 +115140,48 @@
+ <!-- http://purl.obolibrary.org/obo/UBERON_0012294 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0012294"/>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0012296 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0012296"/>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0012297 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0012297"/>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0012298 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0012298"/>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0012299 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0012299"/>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0012302 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0012302"/>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0012303 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0012303"/>
+
+
+
<!-- http://purl.obolibrary.org/obo/UBERON_1000019 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_1000019"/>
2  bridge/uberon-bridge-to-go.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-go
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/uberon-bridge-to-go.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-go.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-go/2012-11-20/uberon/bridge/uberon-bridge-to-go.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-go/2012-11-25/uberon/bridge/uberon-bridge-to-go.owl"/>
</owl:Ontology>
2  bridge/uberon-bridge-to-hao.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-hao
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/uberon-bridge-to-hao.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-hao.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-hao/2012-11-20/uberon/bridge/uberon-bridge-to-hao.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-hao/2012-11-25/uberon/bridge/uberon-bridge-to-hao.owl"/>
</owl:Ontology>
18 bridge/uberon-bridge-to-ma.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-ma
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "Uberon bridge to ma" xsd:string
property_value: dc-description "Taxonomic equivalence axioms between adult moouse anatomy and Uberon" xsd:string
@@ -3497,8 +3497,20 @@ intersection_of: part_of NCBITaxon:10088
[Term]
id: MA:0002647 ! membranous urethra
-property_value: IAO:0000589 "membranous urethra (post-embryonic mouse)" xsd:string
-intersection_of: UBERON:0001336 ! membranous urethra
+property_value: IAO:0000589 "membranous urethra of male or female (post-embryonic mouse)" xsd:string
+intersection_of: UBERON:0001336 ! membranous urethra of male or female
+intersection_of: part_of NCBITaxon:10088
+
+[Term]
+id: MA:0002638 ! female membranous urethra
+property_value: IAO:0000589 "female membranous urethra (post-embryonic mouse)" xsd:string
+intersection_of: UBERON:0012301 ! female membranous urethra
+intersection_of: part_of NCBITaxon:10088
+
+[Term]
+id: MA:0002641 ! male membranous urethra
+property_value: IAO:0000589 "male membranous urethra (post-embryonic mouse)" xsd:string
+intersection_of: UBERON:0012302 ! male membranous urethra
intersection_of: part_of NCBITaxon:10088
[Term]
56 bridge/uberon-bridge-to-ma.owl
View
@@ -20,7 +20,7 @@
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/ma.owl"/>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ma/2012-11-20/uberon/bridge/uberon-bridge-to-ma.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ma/2012-11-25/uberon/bridge/uberon-bridge-to-ma.owl"/>
</owl:Ontology>
@@ -48900,6 +48900,26 @@
+ <!-- http://purl.obolibrary.org/obo/MA_0002638 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/MA_0002638">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0012301"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_10088"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MA:0002638</oboInOwl:id>
+ <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">female membranous urethra (post-embryonic mouse)</obo:IAO_0000589>
+ </owl:Class>
+
+
+
<!-- http://purl.obolibrary.org/obo/MA_0002639 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MA_0002639">
@@ -48940,6 +48960,26 @@
+ <!-- http://purl.obolibrary.org/obo/MA_0002641 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/MA_0002641">
+ <owl:equivalentClass>
+ <owl:Class>
+ <owl:intersectionOf rdf:parseType="Collection">
+ <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0012302"/>
+ <owl:Restriction>
+ <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+ <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_10088"/>
+ </owl:Restriction>
+ </owl:intersectionOf>
+ </owl:Class>
+ </owl:equivalentClass>
+ <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MA:0002641</oboInOwl:id>
+ <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">male membranous urethra (post-embryonic mouse)</obo:IAO_0000589>
+ </owl:Class>
+
+
+
<!-- http://purl.obolibrary.org/obo/MA_0002643 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MA_0002643">
@@ -48995,7 +49035,7 @@
</owl:Class>
</owl:equivalentClass>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MA:0002647</oboInOwl:id>
- <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">membranous urethra (post-embryonic mouse)</obo:IAO_0000589>
+ <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">membranous urethra of male or female (post-embryonic mouse)</obo:IAO_0000589>
</owl:Class>
@@ -72092,6 +72132,18 @@
+ <!-- http://purl.obolibrary.org/obo/UBERON_0012301 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0012301"/>
+
+
+
+ <!-- http://purl.obolibrary.org/obo/UBERON_0012302 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0012302"/>
+
+
+
<!-- http://purl.obolibrary.org/obo/UBERON_1000022 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_1000022"/>
2  bridge/uberon-bridge-to-mfo.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-mfo
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/uberon-bridge-to-mfo.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-mfo.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-mfo/2012-11-20/uberon/bridge/uberon-bridge-to-mfo.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-mfo/2012-11-25/uberon/bridge/uberon-bridge-to-mfo.owl"/>
</owl:Ontology>
6 bridge/uberon-bridge-to-ncithesaurus.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-ncithesaurus
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
@@ -3144,8 +3144,8 @@ is_a: UBERON:0001335 ! prostatic urethra
[Term]
id: ncithesaurus:Membranous_Urethra ! Membranous Urethra
-property_value: IAO:0000589 "membranous urethra (ncithesaurus)" xsd:string
-is_a: UBERON:0001336 ! membranous urethra
+property_value: IAO:0000589 "male membranous urethra (ncithesaurus)" xsd:string
+is_a: UBERON:0012302 ! male membranous urethra
[Term]
id: ncithesaurus:Omental_Bursa ! Omental Bursa
18 bridge/uberon-bridge-to-ncithesaurus.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ncithesaurus.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ncithesaurus/2012-11-20/uberon/bridge/uberon-bridge-to-ncithesaurus.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ncithesaurus/2012-11-25/uberon/bridge/uberon-bridge-to-ncithesaurus.owl"/>
</owl:Ontology>
@@ -2859,12 +2859,6 @@
- <!-- http://purl.obolibrary.org/obo/UBERON_0001336 -->
-
- <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001336"/>
-
-
-
<!-- http://purl.obolibrary.org/obo/UBERON_0001339 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001339"/>
@@ -13449,6 +13443,12 @@
+ <!-- http://purl.obolibrary.org/obo/UBERON_0012302 -->
+
+ <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0012302"/>
+
+
+
<!-- http://purl.obolibrary.org/obo/UBERON_1000021 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_1000021"/>
@@ -27068,8 +27068,8 @@
<!-- http://purl.obolibrary.org/obo/ncithesaurus#_Membranous_Urethra -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ncithesaurus#_Membranous_Urethra">
- <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001336"/>
- <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">membranous urethra (ncithesaurus)</obo:IAO_0000589>
+ <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0012302"/>
+ <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">male membranous urethra (ncithesaurus)</obo:IAO_0000589>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncithesaurus:Membranous_Urethra</oboInOwl:id>
</owl:Class>
2  bridge/uberon-bridge-to-nif_grossanatomy.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-nif_grossanatomy
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/uberon-bridge-to-nif_grossanatomy.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-nif_grossanatomy.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-nif_grossanatomy/2012-11-20/uberon/bridge/uberon-bridge-to-nif_grossanatomy.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-nif_grossanatomy/2012-11-25/uberon/bridge/uberon-bridge-to-nif_grossanatomy.owl"/>
</owl:Ontology>
2  bridge/uberon-bridge-to-og.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-og
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Typedef]
2  bridge/uberon-bridge-to-og.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-og.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-og/2012-11-20/uberon/bridge/uberon-bridge-to-og.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-og/2012-11-25/uberon/bridge/uberon-bridge-to-og.owl"/>
</owl:Ontology>
2  bridge/uberon-bridge-to-spd.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-spd
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/uberon-bridge-to-spd.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-spd.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-spd/2012-11-20/uberon/bridge/uberon-bridge-to-spd.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-spd/2012-11-25/uberon/bridge/uberon-bridge-to-spd.owl"/>
</owl:Ontology>
2  bridge/uberon-bridge-to-tads.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-tads
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/uberon-bridge-to-tads.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-tads.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-tads/2012-11-20/uberon/bridge/uberon-bridge-to-tads.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-tads/2012-11-25/uberon/bridge/uberon-bridge-to-tads.owl"/>
</owl:Ontology>
2  bridge/uberon-bridge-to-tao.owl
View
@@ -20,7 +20,7 @@
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/tao.owl"/>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-tao/2012-11-20/uberon/bridge/uberon-bridge-to-tao.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-tao/2012-11-25/uberon/bridge/uberon-bridge-to-tao.owl"/>
</owl:Ontology>
2  bridge/uberon-bridge-to-tgma.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-tgma
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/uberon-bridge-to-tgma.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-tgma.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-tgma/2012-11-20/uberon/bridge/uberon-bridge-to-tgma.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-tgma/2012-11-25/uberon/bridge/uberon-bridge-to-tgma.owl"/>
</owl:Ontology>
2  bridge/uberon-bridge-to-wbbt.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-wbbt
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
[Term]
2  bridge/uberon-bridge-to-wbbt.owl
View
@@ -13,7 +13,7 @@
xmlns:doap="http://usefulinc.com/ns/doap#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-wbbt.owl">
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-wbbt/2012-11-20/uberon/bridge/uberon-bridge-to-wbbt.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-wbbt/2012-11-25/uberon/bridge/uberon-bridge-to-wbbt.owl"/>
</owl:Ontology>
2  bridge/uberon-bridge-to-xao.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-xao
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "Uberon bridge to xao" xsd:string
property_value: dc-description "Taxonomic equivalence axioms between XAO and Uberon" xsd:string
2  bridge/uberon-bridge-to-xao.owl
View
@@ -20,7 +20,7 @@
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/xao.owl"/>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-xao/2012-11-20/uberon/bridge/uberon-bridge-to-xao.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-xao/2012-11-25/uberon/bridge/uberon-bridge-to-xao.owl"/>
</owl:Ontology>
2  bridge/uberon-bridge-to-zfa.obo
View
@@ -1,5 +1,5 @@
ontology: uberon/bridge/uberon-bridge-to-zfa
-data-version: 2012-11-20
+data-version: 2012-11-25
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "Uberon bridge to zfa" xsd:string
property_value: dc-description "Taxonomic equivalence axioms between ZFA and Uberon" xsd:string
2  bridge/uberon-bridge-to-zfa.owl
View
@@ -21,7 +21,7 @@
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/uberon.owl"/>
<terms:references rdf:resource="http://purl.obolibrary.org/obo/zfa.owl"/>
- <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-zfa/2012-11-20/uberon/bridge/uberon-bridge-to-zfa.owl"/>
+ <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-zfa/2012-11-25/uberon/bridge/uberon-bridge-to-zfa.owl"/>
</owl:Ontology>
6 external-disjoints.obo
View
@@ -561,6 +561,12 @@ disjoint_from: AAO:0000783 ! fovea capitis
id: UBERON:0012248 ! cervical mucosa
disjoint_from: FMA:63009 ! mucosa of cervical part of esophagus
+[Term]
+id: UBERON:0001058 ! mushroom body
+disjoint_from: FAO:0000007 ! fruitbody
+disjoint_from: BTO:0002167 ! mushroom
+disjoint_from: NIF_Quality:sao1983595164 ! Mushroom
+
[Typedef]
id: foaf-homepage
name: homepage
34 reference/references-edit.omn
View
@@ -439,14 +439,19 @@ It might seem that we should be able to infer:
* `metaphysis of femur` SubClassOf part_of some `diaphysis of femur`
But this is not the case, for good reason. The reasoner will infer
-that the femur metaphysis is both part of a diaphysis and part of a
+that a femur metaphysis is both part of a diaphysis and part of a
femur, but it cannot rule out that this diaphysis and this femur are
-partially overlapping.
+only partially overlapping.
-## Solution
+## OWL Solution
+
+We can get the axioms we want by adding additional general axioms:
+
+ * (part_of some `diaphysis` and part_of some `femur`) SubClassOf part_of some `diaphysis of femur`
+
+This is not highly intuitive for ontology developers
-A robust solution requires adding more complex axioms to the ontology
-and using a more powerful reasoner.
+## Heuristic Solution (current)
We instead opt for a *heuristic* solution. We have a rule that has the antecedents:
@@ -461,6 +466,25 @@ And consequents:
Note that this rule is *not safe*. However, they can form the basis of
suggestions which can be implemented by the ontology editor.
+## Alternate Solutions (future)
+
+We might want to automatically generate axioms of this form:
+
+ * (part_of some `diaphysis` and part_of some `femur`) SubClassOf part_of some `diaphysis of femur`
+
+Using rules; for example:
+
+IF
+
+ * P SubClassOf `zone of long bone`
+ * W SubClassOf `long bone`
+
+THEN generate:
+
+ * (part_of some P and part_of some W) SubClassOf part_of some (P and part_of some W)
+
+
+
"^^xsd:string