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Commits on May 24, 2015
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    null

    cmungall authored
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Commits on May 15, 2015
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    null: removed dupe clauses

    cmungall authored
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    fixed thumb images

    cmungall authored
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    cnt

    cmungall authored
Commits on May 14, 2015
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    added note. #697

    cmungall authored
Commits on May 12, 2015
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    Moving one of my favorite axioms to pending;

    cmungall authored
    note that will still ALWAYS be used for internal uberon checks, but will not
    generally be visible publicly, so it will cease causing combined ontologies to be
    incoherent.
    When ZFA fixes #370, we can hopefully move it back (and ZFA can become 'gold' again)
    For now this fixes #694
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    Slight reorganizing of disjointness axioms.

    cmungall authored
     * ones that are inviolable live in main ontology
     * ones that are parked for dealing with later go in pending-disjoints-core.obo
     * ones that are respected in uberon but violated in a ssAO go into pending-disjoints.obo
        * these do not 'see the light of day', but are ALWAYS used for validation WITHIN uberon as part of release process
        * these are also used as validation during the release process against "gold standard" ontologies. The set of gold standards can vary over time. Whether an ontology is gold or not, it should NOT cause incoherency when incorporated into a bridge ontology
    
    Note that we will be slightly more lax when including disjointness axioms in uberon; some will be moved into pending to avoid incoherencies in public sets. However, we still
    keep their value as part of the internal release process
    
    This addresses #694
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    merging 'skeletal muscle of tongue' into 'tongue muscle' as all tongu…

    cmungall authored
    …e muscles are skeletal (FEED:rd)
    
    This addresses #331
    Note this also accompanies commit 1600 to phenotype ontologies
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Commits on May 10, 2015
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    obsoleting AEO-derived epithelial placode and merging with ectodermal…

    cmungall authored
    … placode
    
    adding df to pre-placodal ectoderm for all neurogenic placodes
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    null

    cmungall authored
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    NTs for pretectal nuclei

    cmungall authored
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    v1

    cmungall authored
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    pretectal

    cmungall authored
Commits on May 9, 2015
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    defs, syns

    cmungall authored
Commits on May 7, 2015
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    obo-checks

    cmungall authored
Commits on May 2, 2015
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    def xrefs

    cmungall authored
Commits on Apr 30, 2015
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    removing nasty hidden non-ascii characters in def of nerve cord and o…

    cmungall authored
    …thers from PMID:21062451. Issue #691
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    carapace plate syns

    cmungall authored
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    adding grouping chamber classes for lateral sides. Not quite equivale…

    cmungall authored
    …nt to the xreffed FMA class. Fixes #674
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    body wall

    cmungall authored
Commits on Apr 27, 2015
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Commits on Apr 26, 2015
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    wp-defs

    cmungall authored
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