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new term request: apex of left ventricle #1169

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ANiknejad opened this Issue Nov 2, 2015 · 4 comments

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ANiknejad commented Nov 2, 2015

Hi Chris,

for GTEx annotation,

'apex of left ventricle'

would be useful

http://www.vhlab.umn.edu/atlas/left-ventricle/apex/

Tentative definition:

The apex of the cardiac left ventricle located at the bottom of the left ventricle inferior to both the mitral and aortic valve.

(and same for 'apex of right ventricle' BTW ?)

Mouse ontology has a general term:
[Term]
id: MA:0003017
name: apex of heart ventricle (Mus)
synonym: "apex of cardiac ventricle" RELATED []
relationship: part_of UBERON:0002082 ! cardiac ventricle

Many thanks.
Cheers,

Anne

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cmungall Nov 2, 2015

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We currently model apexes of the heart as points. This is not so useful for gene expression. I assume that what you need is more along the lines of an apical zone, centered around the apex, extending some undefined distance?

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cmungall commented Nov 2, 2015

We currently model apexes of the heart as points. This is not so useful for gene expression. I assume that what you need is more along the lines of an apical zone, centered around the apex, extending some undefined distance?

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ANiknejad Nov 3, 2015

Hi Chris,
I just wanted to report as much precise as possible the information available from GTEx, but maybe yes, here I was too much enthousiastic, Thank you for your patience.
Anne

ANiknejad commented Nov 3, 2015

Hi Chris,
I just wanted to report as much precise as possible the information available from GTEx, but maybe yes, here I was too much enthousiastic, Thank you for your patience.
Anne

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No worries. Should we create a class for apical region?

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cmungall commented Nov 5, 2015

No worries. Should we create a class for apical region?

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ANiknejad Nov 9, 2015

yes, please, it would be fine for GTEx annotation, many thanks

ANiknejad commented Nov 9, 2015

yes, please, it would be fine for GTEx annotation, many thanks

@cmungall cmungall closed this in 34deb73 Nov 20, 2015

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