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Add allen atlases to composite vertebrate/metaozan #1222

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cmungall opened this Issue Jun 7, 2016 · 2 comments

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cmungall commented Jun 7, 2016

Include specific allen brain classes as subclasses of generic uberon classes in composite release

@cmungall cmungall added the neuro label Jun 7, 2016

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cmungall commented Jun 8, 2016

here is a random sample:

         is_a UBERON:0005293 ! cerebellum lobe
          is_a UBERON:0003012 ! flocculonodular lobe ***
           po UBERON:0001063 ! flocculus
            po HBA:4746 ! X, left, lateral hemisphere (human)
            po HBA:4763 ! X, right, paravermis (human)
            po HBA:4779 ! X, right, lateral hemisphere (human)
            po MBA:10690 ! flocculus, granular layer (mouse)
            po MBA:10691 ! flocculus, Purkinje layer (mouse)
            po MBA:10692 ! flocculus, molecular layer (mouse)
            po UBERON:0036043 ! paravermic lobule X
           po UBERON:0004078 ! cerebellum vermis lobule IX
            po HBA:4744 ! IX, left, lateral hemisphere (human)
            po HBA:4761 ! IX, right, paravermis (human)
            po HBA:4777 ! IX, right, lateral hemisphere (human)
            po MBA:10732 ! uvula (IX), granular layer (mouse)
            po MBA:10733 ! uvula (IX), Purkinje layer (mouse)
            po MBA:10734 ! uvula (IX), molecular layer (mouse)
           po UBERON:0004083 ! cerebellum vermis lobule X
            po MBA:10735 ! nodulus (X), granular layer (mouse)
            po MBA:10736 ! nodulus (X), Purkinje layer (mouse)
            po MBA:10737 ! nodulus (X), molecular layer (mouse)
           po UBERON:0005351 ! paraflocculus
            po MBA:10687 ! paraflocculus, granular layer (mouse)
            po MBA:10688 ! paraflocculus, Purkinje layer (mouse)
            po MBA:10689 ! paraflocculus, molecular layer (mouse)
           po UBERON:0024009 ! cerebellum hemispheric lobule X
           po UBERON:0027331 ! flocculonodular lobe, hemisphere portion
            is_a DHBA:12853 ! lobule X (nodulus and flocculus) (human)
            is_a DHBA:13258 ! molecular layer of PVF (human)
            is_a DHBA:13259 ! Purkinje cell layer of PVF (human)
            is_a DHBA:13260 ! granular cell layer of PVF (human)
            is_a HBA:4744 ! IX, left, lateral hemisphere (human)
            is_a HBA:4746 ! X, left, lateral hemisphere (human)
            is_a HBA:4761 ! IX, right, paravermis (human)
            is_a HBA:4763 ! X, right, paravermis (human)
            is_a HBA:4777 ! IX, right, lateral hemisphere (human)
            is_a HBA:4779 ! X, right, lateral hemisphere (human)
            is_a MBA:10687 ! paraflocculus, granular layer (mouse)
            is_a MBA:10688 ! paraflocculus, Purkinje layer (mouse)
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cmungall commented Jun 13, 2016

Another sample, this one the hippocampal fields. Uberon IDs are grey, allen-ontology-specific classes are colored

hf

@cmungall cmungall closed this Jul 7, 2016

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