Uberon has wrong URI for 'has material contribution from' #1237

Closed
cmungall opened this Issue Jul 10, 2016 · 1 comment

Comments

Projects
None yet
1 participant
@cmungall
Member

cmungall commented Jul 10, 2016

It's using RO:0002507, which is actually 'determined by', which has conflicting domain/range.

Need to check how this bypassed the tests...

@cmungall

This comment has been minimized.

Show comment
Hide comment
@cmungall

cmungall Jul 10, 2016

Member

OK, it bypasses the tests because it's never used, and hence the real RO:0002507 (with its domain/range constraints) never ends up in the ro_import module. It's only when you combine uberon with the full RO that the conflict arises.

Ideally we would just remove the relation stanzas from the main ontology... but we need to keep these here if we want to have shortcuts. So overall we need better safeguards. But for now, nix this relation

Member

cmungall commented Jul 10, 2016

OK, it bypasses the tests because it's never used, and hence the real RO:0002507 (with its domain/range constraints) never ends up in the ro_import module. It's only when you combine uberon with the full RO that the conflict arises.

Ideally we would just remove the relation stanzas from the main ontology... but we need to keep these here if we want to have shortcuts. So overall we need better safeguards. But for now, nix this relation

@cmungall cmungall closed this in d92576f Jul 10, 2016

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment