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new term request: Cardiopharyngeal field #1263

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ANiknejad opened this Issue Sep 5, 2016 · 3 comments

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@ANiknejad

ANiknejad commented Sep 5, 2016

http://www.nature.com/nature/journal/v520/n7548/full/nature14435.html#bx1

"Cardiopharyngeal field. Includes anterior lateral mesoderm of the first heart field plus contiguous pharyngeal mesoderm that gives rise to second-heart-field-derived regions of the heart and branchiomeric muscles."

relations should be:

is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007688 ! anlage

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cmungall Sep 22, 2016

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How about this? I think we need to make UBERON:0004140 part of thus? I
think heart anlage in uberon need some work...

[Term]
id: UBERON:0036146
name: cardiopharyngeal field
def: "An region of the mesoderm that includes anterior lateral mesoderm 
of the first heart field plus contiguous pharyngeal mesoderm that gives 
rise to second-heart-field-derived regions of the heart and 
branchiomeric muscles." 
[http://www.nature.com/nature/journal/v520/n7548/full/nature14435.html#bx1, 
BGEE:ann]
is_a: UBERON:0007688 ! anlage
relationship: part_of UBERON:0000922 ! embryo
relationship: develops_from UBERON:0000926 ! mesoderm

On 5 Sep 2016, at 2:59, ANiknejad wrote:

http://www.nature.com/nature/journal/v520/n7548/full/nature14435.html#bx1

"Cardiopharyngeal field. Includes anterior lateral mesoderm of the
first heart field plus contiguous pharyngeal mesoderm that gives rise
to second-heart-field-derived regions of the heart and branchiomeric
muscles."

relations should be:

is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007688 ! anlage

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#1263

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cmungall commented Sep 22, 2016

How about this? I think we need to make UBERON:0004140 part of thus? I
think heart anlage in uberon need some work...

[Term]
id: UBERON:0036146
name: cardiopharyngeal field
def: "An region of the mesoderm that includes anterior lateral mesoderm 
of the first heart field plus contiguous pharyngeal mesoderm that gives 
rise to second-heart-field-derived regions of the heart and 
branchiomeric muscles." 
[http://www.nature.com/nature/journal/v520/n7548/full/nature14435.html#bx1, 
BGEE:ann]
is_a: UBERON:0007688 ! anlage
relationship: part_of UBERON:0000922 ! embryo
relationship: develops_from UBERON:0000926 ! mesoderm

On 5 Sep 2016, at 2:59, ANiknejad wrote:

http://www.nature.com/nature/journal/v520/n7548/full/nature14435.html#bx1

"Cardiopharyngeal field. Includes anterior lateral mesoderm of the
first heart field plus contiguous pharyngeal mesoderm that gives rise
to second-heart-field-derived regions of the heart and branchiomeric
muscles."

relations should be:

is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007688 ! anlage

You are receiving this because you are subscribed to this thread.
Reply to this email directly or view it on GitHub:
#1263

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ANiknejad Sep 26, 2016

Many thanks, Chris!

Regarding this precise definition of the (human) primary heart field:
"The first heart field is a population of early differentiating cardiac progenitor cells that arise in the anterior lateral mesoderm and give rise to the early linear heart tube, and, later, to the myocardium of the left ventricule and parts of the atria."
In:
Understanding Human Anatomy and Pathology: An Evolutionary and Developmental Guide for Medical Students. Rui Diogo. ISBN:978-1498753852

I guess, yes, UBERON:0004140 primary heart field could be part_of this new term

ANiknejad commented Sep 26, 2016

Many thanks, Chris!

Regarding this precise definition of the (human) primary heart field:
"The first heart field is a population of early differentiating cardiac progenitor cells that arise in the anterior lateral mesoderm and give rise to the early linear heart tube, and, later, to the myocardium of the left ventricule and parts of the atria."
In:
Understanding Human Anatomy and Pathology: An Evolutionary and Developmental Guide for Medical Students. Rui Diogo. ISBN:978-1498753852

I guess, yes, UBERON:0004140 primary heart field could be part_of this new term

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uberon Sep 26, 2016

uberon commented Sep 26, 2016

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