Please add PORO to the composite-metazoan #658

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ANiknejad opened this Issue Mar 10, 2015 · 6 comments

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@ANiknejad

Hi Chris,

as you said in
#578

I would appreciate to have PORO available too.
Many thanks,
Anne

cmungall added a commit that referenced this issue Mar 11, 2015

Including the following in composite-metazoan:
 * poro (sponges)
 * cteno (ctenophores)
 * ceph (cephalopods)

This will address #658 when we make the next release

Note that these 3 ontologies were built as uberon-compatible from the ground up,
so the procedure should be simpler
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Preview:

 is_a UBERON:0000465 ! material anatomical entity
   is_a UBERON:0000061 ! anatomical structure
    is_a PORO:0000039 ! canal
     is_a PORO:0000025 ! choanocyte chamber ***
      is_a PORO:0000936 ! choanocyte-lined radial canal ***
      is_a PORO:0000937 ! choanocyte-lined filter chamber ***
    is_a PORO:0000915 ! chamber
     is_a PORO:0000025 ! choanocyte chamber ***
      is_a PORO:0000936 ! choanocyte-lined radial canal ***
      is_a PORO:0000937 ! choanocyte-lined filter chamber ***
     is_a PORO:0000197 ! choanochamber ***
    is_a UBERON:0010000 ! multicellular anatomical structure
     is_a UBERON:0000468 ! multi-cellular organism
      is_a PORO:0000001 ! sponge
       po PORO:0000000 ! sponge cell
        is_a PORO:0000914 ! flagellated cell
         is_a PORO:0000003 ! choanocyte ***
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cmungall commented Mar 16, 2015

Preview:

 is_a UBERON:0000465 ! material anatomical entity
   is_a UBERON:0000061 ! anatomical structure
    is_a PORO:0000039 ! canal
     is_a PORO:0000025 ! choanocyte chamber ***
      is_a PORO:0000936 ! choanocyte-lined radial canal ***
      is_a PORO:0000937 ! choanocyte-lined filter chamber ***
    is_a PORO:0000915 ! chamber
     is_a PORO:0000025 ! choanocyte chamber ***
      is_a PORO:0000936 ! choanocyte-lined radial canal ***
      is_a PORO:0000937 ! choanocyte-lined filter chamber ***
     is_a PORO:0000197 ! choanochamber ***
    is_a UBERON:0010000 ! multicellular anatomical structure
     is_a UBERON:0000468 ! multi-cellular organism
      is_a PORO:0000001 ! sponge
       po PORO:0000000 ! sponge cell
        is_a PORO:0000914 ! flagellated cell
         is_a PORO:0000003 ! choanocyte ***
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OMG, giant squid merges with Uberon!!

 / UBERON:0001062 ! anatomical entity
  is_a UBERON:0000465 ! material anatomical entity
   is_a UBERON:0000061 ! anatomical structure
    is_a UBERON:0010000 ! multicellular anatomical structure
     is_a UBERON:0000468 ! multi-cellular organism
      po UBERON:0000475 ! organism subdivision
       is_a CEPH:0000307 ! circumoral appendage segment
        is_a CEPH:0000291 ! tentacular club *** 
       is_a UBERON:0000026 ! appendage
        is_a CEPH:0000308 ! circumoral appendage
         is_a CEPH:0000256 ! tentacle
          po CEPH:0000291 ! tentacular club *** 
         po CEPH:0000307 ! circumoral appendage segment
          is_a CEPH:0000291 ! tentacular club *** 
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cmungall commented Mar 16, 2015

OMG, giant squid merges with Uberon!!

 / UBERON:0001062 ! anatomical entity
  is_a UBERON:0000465 ! material anatomical entity
   is_a UBERON:0000061 ! anatomical structure
    is_a UBERON:0010000 ! multicellular anatomical structure
     is_a UBERON:0000468 ! multi-cellular organism
      po UBERON:0000475 ! organism subdivision
       is_a CEPH:0000307 ! circumoral appendage segment
        is_a CEPH:0000291 ! tentacular club *** 
       is_a UBERON:0000026 ! appendage
        is_a CEPH:0000308 ! circumoral appendage
         is_a CEPH:0000256 ! tentacle
          po CEPH:0000291 ! tentacular club *** 
         po CEPH:0000307 ! circumoral appendage segment
          is_a CEPH:0000291 ! tentacular club *** 
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Shall we throw in ctenophores too?

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cmungall commented Mar 16, 2015

Shall we throw in ctenophores too?

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   is_a UBERON:0004456 ! entire sense organ system
     po UBERON:0001032 ! sensory system
      po CTENO:0000017 ! apical sense organ *** 
       po CTENO:0000013 ! dome cilium
       po CTENO:0000055 ! apical organ floor
       po CTENO:0000058 ! apical organ statolith
       po CTENO:0000060 ! epithelial papilla
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cmungall commented Mar 16, 2015

   is_a UBERON:0004456 ! entire sense organ system
     po UBERON:0001032 ! sensory system
      po CTENO:0000017 ! apical sense organ *** 
       po CTENO:0000013 ! dome cilium
       po CTENO:0000055 ! apical organ floor
       po CTENO:0000058 ! apical organ statolith
       po CTENO:0000060 ! epithelial papilla
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fbastian Mar 17, 2015

Cool, thank you :)

Cool, thank you :)

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In 2015-03-15 release, available now. Reopen this if there's any issues.

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cmungall commented Mar 17, 2015

In 2015-03-15 release, available now. Reopen this if there's any issues.

@cmungall cmungall closed this Mar 17, 2015

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