New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Term request: XXX upper central secondary incisor tooth #671

Closed
drseb opened this Issue Apr 11, 2015 · 3 comments

Comments

Projects
None yet
2 participants
@drseb
Member

drseb commented Apr 11, 2015

I am kindly asking you to add the following UBERON terms in order to get rid of FMA references:

Right upper central secondary incisor tooth (FMA:55681)
Left upper central secondary incisor tooth (FMA:55682)

Thanks
Sebastian

@cmungall

This comment has been minimized.

Show comment
Hide comment
@cmungall

cmungall Apr 12, 2015

Member

I have an aversion to naming lateral skeletal elements.

I assume this is for
HP:0001566 ! Widely-spaced maxillary central incisors
which currently is defined as 'increased distance' and inheres in some 'left upper secondary incisor' and towards some 'right upper secondary incisor'.

This is weird and wrong, and will lead to both missing inferences and incorrect inferences.

I suggest adding a class 'inter-tooth gap' and subclasses. Then we can use a simple length quality measurement. This is similar to what is done for inter-pupil inter-nippple etc distances. Sound OK?

I also suggest weakening the marked syn below to BROAD

[Term]
id: HP:0001566
name: Widely-spaced maxillary central incisors
namespace: human_phenotype
alt_id: HP:0000669
alt_id: HP:0001570
alt_id: HP:0006300
alt_id: HP:0006324
def: "Increased distance between the `maxillary central permanent incisor tooth` (FMA:55722)." [HPO:ibailleulforestier]
***synonym: "Central incisor gap" EXACT []
synonym: "Diastasis of the central incisors" EXACT []
synonym: "Separated superior central incisors" EXACT []
synonym: "Wide gap between upper central incisors" EXACT []
synonym: "Wide upper central incisors" EXACT []
synonym: "Widely spaced upper incisors" EXACT []
xref: UMLS:C1835762
is_a: HP:0000699  ! Diastema
is_a: HP:0006304  ! Widely-spaced incisors
Member

cmungall commented Apr 12, 2015

I have an aversion to naming lateral skeletal elements.

I assume this is for
HP:0001566 ! Widely-spaced maxillary central incisors
which currently is defined as 'increased distance' and inheres in some 'left upper secondary incisor' and towards some 'right upper secondary incisor'.

This is weird and wrong, and will lead to both missing inferences and incorrect inferences.

I suggest adding a class 'inter-tooth gap' and subclasses. Then we can use a simple length quality measurement. This is similar to what is done for inter-pupil inter-nippple etc distances. Sound OK?

I also suggest weakening the marked syn below to BROAD

[Term]
id: HP:0001566
name: Widely-spaced maxillary central incisors
namespace: human_phenotype
alt_id: HP:0000669
alt_id: HP:0001570
alt_id: HP:0006300
alt_id: HP:0006324
def: "Increased distance between the `maxillary central permanent incisor tooth` (FMA:55722)." [HPO:ibailleulforestier]
***synonym: "Central incisor gap" EXACT []
synonym: "Diastasis of the central incisors" EXACT []
synonym: "Separated superior central incisors" EXACT []
synonym: "Wide gap between upper central incisors" EXACT []
synonym: "Wide upper central incisors" EXACT []
synonym: "Widely spaced upper incisors" EXACT []
xref: UMLS:C1835762
is_a: HP:0000699  ! Diastema
is_a: HP:0006304  ! Widely-spaced incisors
@drseb

This comment has been minimized.

Show comment
Hide comment
@drseb

drseb Apr 13, 2015

Member

Please create a class "inter-tooth gap" and the herein required subclass.

Can you let me know where the class for inter-nipple distance is located. I can't seem to find it!

I have changed the exact to broad synonym.

Thank you very much,
Sebastian

Member

drseb commented Apr 13, 2015

Please create a class "inter-tooth gap" and the herein required subclass.

Can you let me know where the class for inter-nipple distance is located. I can't seem to find it!

I have changed the exact to broad synonym.

Thank you very much,
Sebastian

@cmungall

This comment has been minimized.

Show comment
Hide comment
@cmungall

cmungall Apr 14, 2015

Member

I think the label should probably be more explicit this is between nipples

Member

cmungall commented Apr 14, 2015

I think the label should probably be more explicit this is between nipples

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment