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Term request: Anterior body wall #683

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drseb opened this Issue Apr 11, 2015 · 2 comments

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drseb commented Apr 11, 2015

We want to remove all reference to FMA in HPO. For this we need a class for "Anterior body wall". In FMA this class has ID FMA:86934. Can you add this to UBERON?

Best,
Sebastian

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cmungall commented Apr 30, 2015

Is this for

id: HP:0001539
name: Omphalocele
namespace: human_phenotype
def: "A midline anterior `incomplete closure` (PATO:0000609) of the `abdominal wall` (FMA:259054) in which there is herniation of the abdominal viscera into the base of the abdominal cord." [HPO:probinson]
subset: hposlim_core  ! Core clinical terminology
synonym: "Omphalocoele" EXACT []
xref: MEDRA:10030309
xref: SNOMEDCT:18735004
xref: UMLS:C0795690
is_a: HP:0004299  ! Hernia of the abdominal wall

I think the use of FMA:86934 may have been a mistake

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cmungall commented Apr 30, 2015

    is_a HP:0100790 ! Hernia
     is_a HP:0004299 ! Hernia of the abdominal wall [DEF: "The presence of a hernia in the `abdominal wall` (FMA:259054)."]
      is_a HP:0000023 ! Inguinal hernia [DEF: "Protrusion of the contents of the abdominal cavity through the inguinal canal."]
      is_a HP:0001537 ! Umbilical hernia [DEF: "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect."]
      is_a HP:0001539 ! Omphalocele ***  [DEF: "A midline anterior `incomplete closure` (PATO:0000609) of the `abdominal wall` (FMA:259054) in which there is herniation of the abdominal viscera into the base of the abdominal cord."]
      is_a HP:0002933 ! Ventral hernia [DEF: "Ventral hernia refers to a condition in which abdominal contents protrude through a weakened portion of the abnominal wall."]
      is_a HP:0004872 ! Incisional hernia [DEF: "An abdominal hernia that occurs at a site of weakness in the abdominal wall resulting from an incompletely-healed surgical wound."]
      is_a HP:0100541 ! Femoral hernia [DEF: "A hernia which occurs just below the inguinal ligament, where abdominal contents pass through a naturally occurring weakness called the femoral canal."]
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