Manual

User Docs

• [Developer Guide](Developer Guide) for software developers
• Using uberon for text mining
• Taxon constraints
• inter anatomy ontology bridge ontologies
• Multi species composite ontologies
• Multi species importer ontologies
• Class depictions images of anatomical structures
• Connecting processes to anatomy

Editor Docs

• Editors guide for Uberon developers and contributors
• Continuous integration how Uberon uses CI
• [Editor tools guide](Editor tools guide)

Design Patterns

Basic

• Modeling endochondral elements Design Pattern
• Inter ontology disjointness Design Pattern
• Modeling articulations Design Pattern
• Modeling paired structures Design Pattern
• Provenance Design Pattern
• Skeleton partonomy Design Pattern
• Multiple inheritance

Advanced

• Part disjointness Design Pattern
• Connectivity Design Pattern
• Inferring part of relationships
• Evolutionary variability GCIs
• Conflation vs discrimination Design Pattern

Anatomical structures

Detailed documentation of how specific structures, regions and systems are modeled in Uberon. Note that most classes are self-documented; these pages provide room for more in-depth coverage of complex issues.

• The axial skeleton
• The digestive tract
• The neural crest
• The skeletal system
• Subdivisions of the autopod
• Appendages and the appendicular skeleton
• Cranial terminology

Meta

• About this documentation

Drafts

• Epithelial configurations
• Modeling extraembryonic membranes
• Modeling developmental stages
• [The Nervous System](The Nervous System)

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