Jupyter Notebook for NEXRAD L2 visualizations
Switch branches/tags
Nothing to show
Clone or download
Pull request Compare This branch is even with zivvers:master.
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Failed to load latest commit information.
nexrad
README.md

README.md

JUPYTER NOTEBOOK TO RUN "DE-BUGGING" NEXRAD LEVEL 2 PLOTTING tutorial

"DE-BUGGING" NEXRAD LEVEL 2 PLOTTING is a simple introduction to plotting and animating NEXRAD LEVEL 2 data. It introduces the Griffin user the index service to download NEXRAD data. It demonstrates radar reflectivity plotting using the Python module pyart, and some simple filtering techniques that can be used to clean the NEXRAD L2 data. Finally, this tutorial uses some clever HTML manipulations to allow the user to produce weather animations within the Jupyter Notebook.

SECTION I: How to configure vanilla Ubuntu VM for this tutorial

NOTE: the Griffin public image is already configured & ready to go

  1. Add Griffin proxies as variables in .bashrc

    printf "export no_proxy='griffin-objstore.opensciencedatacloud.org'\nfunction with_proxy() {\n\tPROXY='http://cloud-proxy:3128'\n\thttp_proxy='\${PROXY}' https_proxy='\${PROXY}' \$@\n}" >> ~/.bashrc
    
  2. Source .bashrc

    . .bashrc
    
  3. Install Miniconda

    with_proxy wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
    bash Miniconda2-latest-Linux-x86_64.sh -b 
    
  4. Install requisite Python modules

    with_proxy conda update conda
    with_proxy conda install -c https://conda.binstar.org/jjhelmus pyart
    with_proxy conda install jupyter
    with_proxy conda install basemap
    
  5. Install tools for visualizations

    with_proxy sudo -E apt-get update
    with_proxy sudo -E apt-get install -y libav-tools 
    with_proxy sudo -E apt-get install -y python-qt4
    

SECTION II: How to run Jupyter Notebook

  1. From your Local Machine (e.g. your laptop):add following lines to ~/.ssh (replacing <OSDC username> with your OSDC username)

    Host 172.17.*
    User ubuntu
    ProxyCommand ssh <OSDC username>@griffin.opensciencedatacloud.org nc %h %p 2> /dev/null
    
  2. From Griffin VM

    	jupyter notebook --no-browser
    
  3. From your Local Machine

    ssh -L <local port>:localhost:<griffin port> -N <Griffin VM IP Address>
    

    replacing <griffin port> with <port> given in jupyter notebook --no-browser output as

    The Jupyter Notebook is running at: http://localhost:/

  4. From your Local Machine

    open browser, enter http://localhost:<local port>

SECTION III: What are these directories and files?

  • miniconda: from Miniconda installation, ignore
  • nexrad: working directory for this tutorial
    • mayfly_arks.txt: file containing ark IDs for relevant NEXRAD L2 data
    • mayfly_data: directory into which we will download NEXRAD L2 data
    • nexrad_display_id_service.ipynb: Jupter Notebook for tutorial
    • plots: directory into which we will save weather radar plots
    • README.md: file you are currently viewing