From 88d0ca4eb974ce5e8ac7636b6e448fdc5ca94b5c Mon Sep 17 00:00:00 2001 From: Alex Kerney Date: Mon, 31 Jul 2023 17:47:04 -0400 Subject: [PATCH 1/2] Explicit packages for Marty and Myranda's tutorials Additionally updates Pangeo-notebook, adds mamba, and removes tensorflow as it was likely responsible for exploding the build as the Docker image would not actually load Closes #71 #72 Xref https://github.com/docker/build-push-action/issues/321 --- py-base/conda-linux-64.lock | 843 +++++++++++++++++++----------------- py-base/environment.yml | 22 +- 2 files changed, 465 insertions(+), 400 deletions(-) diff --git a/py-base/conda-linux-64.lock b/py-base/conda-linux-64.lock index 5e41fb9..682bfdf 100644 --- a/py-base/conda-linux-64.lock +++ b/py-base/conda-linux-64.lock @@ -1,372 +1,399 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: 5b2c2ec0d7a793127d9a1287f4a0fc853437379709ffe24b157f03a68a44ee07 +# input_hash: 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-https://conda.anaconda.org/conda-forge/noarch/pangeo-notebook-2023.02.11-hd8ed1ab_0.conda#25247a91eb90b34f8c2a2922659388c8 +https://conda.anaconda.org/conda-forge/noarch/pangeo-notebook-2023.07.21-hd8ed1ab_0.conda#48c956d3d569c7f7a746524863692dfe diff --git a/py-base/environment.yml b/py-base/environment.yml index f7592ff..0632a7c 100644 --- a/py-base/environment.yml +++ b/py-base/environment.yml @@ -4,7 +4,7 @@ channels: dependencies: # base - python=3.9 - - pangeo-notebook=2023.02.11 + - pangeo-notebook=2023.07.21 - nb_conda_kernels - curl - git @@ -13,6 +13,7 @@ dependencies: - vim - gh - nano + - mamba # JupyterLab language packs - jupyterlab-language-pack-es-ES - jupyterlab-language-pack-pt-BR @@ -100,7 +101,8 @@ dependencies: # and it may be a good idea to pin it to <2 - shapely - siphon - - tensorflow-cpu + # - tensorflow-cpu # keras and tensorflow cause our images to become much larger + # Which can cause problems with Github Actions running out of storage https://github.com/docker/build-push-action/issues/321 - unzip - windrose - xarray @@ -108,3 +110,19 @@ dependencies: - xgcm # - xlrd # deprecated, use openpyxl instead - zarr + # Tutorial specific, may be dupes to make things explicit + - pandas # 23-Myranda + - xarray # 23-Myranda + - seaborn # 23-Myranda + - matplotlib # 23-Myranda + - owslib # 23-Marty + - pandas # 23-Marty + - xarray # 23-Marty + - cartopy # 23-Marty + - holoviews # 23-Marty + - hvplot # 23-Marty + - geoviews # 23-Marty + - netcdf4 # 23-Marty + - s3fs # 23-Marty + - zarr # 23-Marty + - h5netcdf # 23-Marty From fab6d63fab6632015d7f8da8319d3fbefdbbfd74 Mon Sep 17 00:00:00 2001 From: Alex Kerney Date: Mon, 31 Jul 2023 18:38:51 -0400 Subject: [PATCH 2/2] Remove Jupyter to remove QT and add scoped creds Saves another .5 GB. --- py-base/conda-linux-64.lock | 46 +++---------------------------------- py-base/environment.yml | 5 ++-- 2 files changed, 6 insertions(+), 45 deletions(-) diff --git a/py-base/conda-linux-64.lock b/py-base/conda-linux-64.lock index 682bfdf..44182f2 100644 --- a/py-base/conda-linux-64.lock +++ b/py-base/conda-linux-64.lock @@ -1,6 +1,6 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: 95e647732d49f5349cc24b9d5155ae0b79e76470d894acd39bf80818292d964f +# input_hash: 8b7d3bbd426f3880dccd4c55385d1c91452af4536ff054b4684a3ed627c514d8 @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2023.7.22-hbcca054_0.conda#a73ecd2988327ad4c8f2c331482917f2 @@ -30,9 +30,7 @@ https://conda.anaconda.org/conda-forge/noarch/fonts-conda-ecosystem-1-0.tar.bz2# https://conda.anaconda.org/conda-forge/linux-64/binutils-2.40-hdd6e379_0.conda#ccc940fddbc3fcd3d79cd4c654c4b5c4 https://conda.anaconda.org/conda-forge/linux-64/binutils_linux-64-2.40-hbdbef99_1.conda#855757cf4cf920cc9b6130a32fdcaa81 https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.1.0-he5830b7_0.conda#cd93f779ff018dd85c7544c015c9db3c -https://conda.anaconda.org/conda-forge/linux-64/alsa-lib-1.2.9-hd590300_0.conda#a0c6f0e7e1a467f5678f94dea18c8aa7 https://conda.anaconda.org/conda-forge/linux-64/aom-3.5.0-h27087fc_0.tar.bz2#a08150fd2298460cd1fcccf626305642 -https://conda.anaconda.org/conda-forge/linux-64/attr-2.5.1-h166bdaf_1.tar.bz2#d9c69a24ad678ffce24c6543a0176b00 https://conda.anaconda.org/conda-forge/linux-64/aws-c-common-0.8.23-hd590300_0.conda#cc4f06f7eedb1523f3b83fd0fb3942ff https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h7f98852_4.tar.bz2#a1fd65c7ccbf10880423d82bca54eb54 https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.19.1-hd590300_0.conda#e8c18d865be43e2fb3f7a145b6adf1f5 @@ -65,7 +63,6 @@ https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-h166bdaf_0.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-2.1.5.1-h0b41bf4_0.conda#1edd9e67bdb90d78cea97733ff6b54e6 https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.0-h7f98852_0.tar.bz2#39b1328babf85c7c3a61636d9cd50206 https://conda.anaconda.org/conda-forge/linux-64/libnuma-2.0.16-h0b41bf4_1.conda#28bfe2cb11357ccc5be21101a6b7ce86 -https://conda.anaconda.org/conda-forge/linux-64/libogg-1.3.4-h7f98852_1.tar.bz2#6e8cc2173440d77708196c5b93771680 https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.23-pthreads_h80387f5_0.conda#9c5ea51ccb8ffae7d06c645869d24ce6 https://conda.anaconda.org/conda-forge/linux-64/libopus-1.3.1-h7f98852_1.tar.bz2#15345e56d527b330e1cacbdf58676e8f https://conda.anaconda.org/conda-forge/linux-64/libpciaccess-0.17-h166bdaf_0.tar.bz2#b7463391cf284065294e2941dd41ab95 @@ -83,7 +80,6 @@ https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-hd590300_5.conda# https://conda.anaconda.org/conda-forge/linux-64/libzopfli-1.0.3-h9c3ff4c_0.tar.bz2#c66fe2d123249af7651ebde8984c51c2 https://conda.anaconda.org/conda-forge/linux-64/lz4-c-1.9.4-hcb278e6_0.conda#318b08df404f9c9be5712aaa5a6f0bb0 https://conda.anaconda.org/conda-forge/linux-64/lzo-2.10-h516909a_1000.tar.bz2#bb14fcb13341b81d5eb386423b9d2bac -https://conda.anaconda.org/conda-forge/linux-64/mpg123-1.31.3-hcb278e6_0.conda#141a126675b6d1a4eabb111a4a353898 https://conda.anaconda.org/conda-forge/linux-64/mpich-4.1.1-h846660c_100.conda#ab09aa6355ea6eff1dba84c8469174ba https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.4-hcb278e6_0.conda#681105bccc2a3f7f1a837d47d39c9179 https://conda.anaconda.org/conda-forge/linux-64/nettle-3.8.1-hc379101_1.tar.bz2#3cb2c7df59990bd37c2ce27fd906de68 @@ -107,7 +103,6 @@ https://conda.anaconda.org/conda-forge/linux-64/xorg-libxau-1.0.11-hd590300_0.co https://conda.anaconda.org/conda-forge/linux-64/xorg-libxdmcp-1.1.3-h7f98852_0.tar.bz2#be93aabceefa2fac576e971aef407908 https://conda.anaconda.org/conda-forge/linux-64/xorg-renderproto-0.11.1-h7f98852_1002.tar.bz2#06feff3d2634e3097ce2fe681474b534 https://conda.anaconda.org/conda-forge/linux-64/xorg-xextproto-7.3.0-h0b41bf4_1003.conda#bce9f945da8ad2ae9b1d7165a64d0f87 -https://conda.anaconda.org/conda-forge/linux-64/xorg-xf86vidmodeproto-2.3.1-h7f98852_1002.tar.bz2#3ceea9668625c18f19530de98b15d5b0 https://conda.anaconda.org/conda-forge/linux-64/xorg-xproto-7.0.31-h7f98852_1007.tar.bz2#b4a4381d54784606820704f7b5f05a15 https://conda.anaconda.org/conda-forge/linux-64/xxhash-0.8.1-h0b41bf4_0.conda#e9c3bcf0e0c719431abec8ca447eee27 https://conda.anaconda.org/conda-forge/linux-64/xz-5.2.6-h166bdaf_0.tar.bz2#2161070d867d1b1204ea749c8eec4ef0 @@ -127,12 +122,9 @@ https://conda.anaconda.org/conda-forge/linux-64/libavif-0.11.1-h8182462_2.conda# 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-https://conda.anaconda.org/conda-forge/linux-64/libgpg-error-1.47-h71f35ed_0.conda#c2097d0b46367996f09b4e8e4920384a https://conda.anaconda.org/conda-forge/linux-64/libidn2-2.3.4-h166bdaf_0.tar.bz2#7440fbafd870b8bab68f83a064875d34 https://conda.anaconda.org/conda-forge/linux-64/libllvm14-14.0.6-hcd5def8_4.conda#73301c133ded2bf71906aa2104edae8b https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.52.0-h61bc06f_0.conda#613955a50485812985c059e7b269f42e @@ -143,12 +135,10 @@ https://conda.anaconda.org/conda-forge/linux-64/librttopo-1.1.0-h0d5128d_13.cond https://conda.anaconda.org/conda-forge/linux-64/libsolv-0.7.24-hfc55251_1.conda#9d2787f2fdcf65661e2416b2dffdb668 https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.42.0-h2797004_0.conda#fdaae20a1cf7cd62130a0973190a31b7 https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.0-h0841786_0.conda#1f5a58e686b13bcfde88b93f547d23fe 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https://conda.anaconda.org/conda-forge/linux-64/pcre2-10.40-hc3806b6_0.tar.bz2#69e2c796349cd9b273890bee0febfe1b @@ -178,17 +168,13 @@ https://conda.anaconda.org/conda-forge/linux-64/gxx_impl_linux-64-12.3.0-he2b93b https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.1-h659d440_0.conda#1b5126ec25763eb17ef74c8763d26e84 https://conda.anaconda.org/conda-forge/linux-64/libarchive-3.6.2-h039dbb9_1.conda#29cf970521d30d113f3425b84cb250f6 https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.9.0-17_linux64_openblas.conda#7ef0969b00fe3d6eef56a8151d3afb29 -https://conda.anaconda.org/conda-forge/linux-64/libgcrypt-1.10.1-h166bdaf_0.tar.bz2#f967fc95089cd247ceed56eda31de3a9 https://conda.anaconda.org/conda-forge/linux-64/libglib-2.76.4-hebfc3b9_0.conda#c6f951789c888f7bbd2dd6858eab69de https://conda.anaconda.org/conda-forge/linux-64/libgrpc-1.56.2-h3905398_0.conda#a87e780f3d9cc7cf432e47ced83a67ce 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-https://conda.anaconda.org/conda-forge/noarch/qtconsole-base-5.4.3-pyha770c72_0.conda#e0f5e8a6f9ea248e5c2d23efffff08f7 https://conda.anaconda.org/conda-forge/linux-64/rasterio-1.3.8-py39head80b8_0.conda#1e4a7eba7d4ef8274f55cedcc5d8a3bc https://conda.anaconda.org/conda-forge/noarch/s3fs-2023.6.0-pyhd8ed1ab_0.conda#6c06cee0c302aca34978d8e0ae617880 https://conda.anaconda.org/conda-forge/linux-64/scipy-1.11.1-py39h6183b62_0.conda#81212684c03e970520656f1a62ab9d39 @@ -660,7 +622,6 @@ https://conda.anaconda.org/conda-forge/noarch/paegan-1.1.4-py_1.tar.bz2#50677bb3 https://conda.anaconda.org/conda-forge/noarch/paramz-0.9.5-py_0.tar.bz2#7f57dd963fd8215dfe30160068b97a03 https://conda.anaconda.org/conda-forge/noarch/parcels-2.4.2-pyha2b7ab6_2.conda#b95023adf6d4f3e4f3544c5db848576c https://conda.anaconda.org/conda-forge/noarch/patsy-0.5.3-pyhd8ed1ab_0.tar.bz2#50ef6b29b1fb0768ca82c5aeb4fb2d96 -https://conda.anaconda.org/conda-forge/noarch/qtconsole-5.4.3-pyhd8ed1ab_0.conda#3777f933bec5113d5a292de10b03d0f6 https://conda.anaconda.org/conda-forge/noarch/rioxarray-0.14.1-pyhd8ed1ab_0.conda#5156f4c96119e2832419a9b17cb82cab https://conda.anaconda.org/conda-forge/linux-64/scikit-image-0.21.0-py39h3d6467e_0.conda#8259084f3ed10a5f3a7a30f8eb8a4500 https://conda.anaconda.org/conda-forge/linux-64/scikit-learn-1.3.0-py39hc236052_0.conda#4b8fa3e23c04ea72f936714248037f00 @@ -695,7 +656,6 @@ https://conda.anaconda.org/conda-forge/noarch/ioos-tools-1.4.0-py_1.tar.bz2#21c6 https://conda.anaconda.org/conda-forge/noarch/jupyterlab-git-0.41.0-pyhd8ed1ab_1.conda#5985549f77be4aae95bfd9e1a7916144 https://conda.anaconda.org/conda-forge/noarch/notebook-6.5.4-pyha770c72_0.conda#ec4ce3ce0a55ce21b6f5b86049b97af9 https://conda.anaconda.org/conda-forge/noarch/seaborn-0.12.2-hd8ed1ab_0.conda#50847a47c07812f88581081c620f5160 -https://conda.anaconda.org/conda-forge/linux-64/jupyter-1.0.0-py39hf3d152e_8.conda#04791c7a12c10394bba22cfcd4c6c755 https://conda.anaconda.org/conda-forge/noarch/jupyter_contrib_core-0.4.0-pyhd8ed1ab_0.tar.bz2#411e592d362f923fac66550b9c3ce25e https://conda.anaconda.org/conda-forge/noarch/jupyterlab-3.6.5-pyhd8ed1ab_0.conda#82299e1d33c6f130688f90880e6b3b4f https://conda.anaconda.org/conda-forge/noarch/nbgitpuller-1.1.1-pyhd8ed1ab_0.tar.bz2#a2c72cf8c5fb4cd269bff97e9bf196e8 diff --git a/py-base/environment.yml b/py-base/environment.yml index 0632a7c..e7af236 100644 --- a/py-base/environment.yml +++ b/py-base/environment.yml @@ -14,6 +14,7 @@ dependencies: - gh - nano - mamba + - gh-scoped-creds # github auth via https://docs.2i2c.org/data/git/ # JupyterLab language packs - jupyterlab-language-pack-es-ES - jupyterlab-language-pack-pt-BR @@ -61,7 +62,7 @@ dependencies: - ioos_qc - ipyleaflet - ipywidgets # supplied by pangeo-notebook - - jupyter + # - jupyter # brings in QT, and JupyterLab only needs jupyter_core # - jupyter-rsession-proxy # - jupyer-server-proxy # supplied by pangeo-notebook - jupyter_contrib_nbextensions @@ -114,7 +115,7 @@ dependencies: - pandas # 23-Myranda - xarray # 23-Myranda - seaborn # 23-Myranda - - matplotlib # 23-Myranda + - matplotlib-base # 23-Myranda - owslib # 23-Marty - pandas # 23-Marty - xarray # 23-Marty