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Templating for scientific papers

This helper allows to embed symbolic references to the data into the scientific paper. The framework aims to help establishing transparent data-to-paper flow, and features:

  • based on Jinja2
  • integraion with Latex
  • an alternative mode to generate any text-based format (e.g. for GCN, ATel, VOEvent, etc)
  • automatic handling of physical units
  • reading data from yaml
  • reading data from workflow data
  • integration with a Jupyter notebooks
  • extensible with python modules

Cite-by-meaning model

  • comprehensive citing: cite by tag, title, author, statement
  • cite by fact (expressed as rdf)
  • integration with zotero

Encourages explaining the reason behind citing. Typical literature work flow:

  • interesting paper noticed (or possibly any paper) and integrated in zotero
  • writing the draft in latex, a context (fact, review, etc) requires a citation
  • citation by tag is inserted, but produces many references, some irrelevant
  • the citation request as well as literature annotation base is refined until the citation is as desired
  • final citation contains not only the tranditional bibliographic reference, but also the reason why it was included, captured in the citation command and the annotated literature base

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Integrate data references in latex, in part generating the paper automatically.

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