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0.4.0.9001

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Øystein Olav Skaar
Øystein Olav Skaar committed Sep 14, 2019
1 parent 9452abf commit 919aee32cea64e9b017755fa45ec598f65452fd7
Showing with 28 additions and 17 deletions.
  1. +1 −1 DESCRIPTION
  2. +6 −0 NEWS.md
  3. +4 −4 R/plot_parse.R
  4. +17 −12 README.md
@@ -1,5 +1,5 @@
Package: bfw
Version: 0.4.0.9000
Version: 0.4.0.9001
Date: 2019-09-14
Title: Bayesian Framework for Computational Modeling
Authors@R: person( "Øystein Olav","Skaar", email="bayesianfw@gmail.com", role=c("aut","cre"))
@@ -1,3 +1,9 @@
# bfw 0.4.0.9001

#### Minor

* Updated `ParsePlot` function to conform with changes in `rvg` package: Part Deux

# bfw 0.4.0.9000

#### Minor
@@ -373,19 +373,19 @@ ParsePlot <- function (plot.data,
lapply(create.document, function (j) {

# Add new slide
document <- officer::add_slide(document, "Title and Content", "Office Theme")
document <- officer::add_slide(document, "Title and Content", "Office Theme" )

# If Vector graphics use rvg
if (vector.graphic) {

# Create slide
document <- rvg::ph_with_vg(document,
document <- rvg::ph_with_vg_at(document,
print(plot.data[[j]]),
fonts = list(font.type),
type = "body",
pointsize = point.size,
offx = (page.width - plot.width) / 2,
offy = (page.height - plot.height) / 2,
left = (page.width - plot.width) / 2,
top = (page.height - plot.height) / 2,
width = plot.width,
height = plot.height

@@ -1,4 +1,5 @@
<!-- README.md is generated from README.Rmd. Please edit that file -->

*bfw*: Bayesian Framework for Computational Modeling
====================================================

@@ -7,9 +8,9 @@
<a href="man/figures/logo2.png" id="logo2" title="Logo II"><img src="man/figures/logo2.png" width="250px" alt="Logo II" /></a>
</p>
<p align="center">
<a href="NEWS.md" id="news" title="News"><img src="https://img.shields.io/badge/News-2019.02.04 @ 11:50:01-purple.svg" alt="News" /></a>
<a href="NEWS.md" id="news" title="News"><img src="https://img.shields.io/badge/News-2019.09.14 @ 16:16:00-purple.svg" alt="News" /></a>
<a href="https://CRAN.R-project.org/package=bfw" id="cran" title="CRAN Version"><img src="https://www.r-pkg.org/badges/version/bfw" alt="CRAN Version" /></a>
<a href="https://github.com/oeysan/bfw" id="github" title="GitHub Version"><img src="https://img.shields.io/badge/GitHub-0.4.0-red.svg?style=flat-square" alt="GitHub Version" /></a>
<a href="https://github.com/oeysan/bfw" id="github" title="GitHub Version"><img src="https://img.shields.io/badge/GitHub-0.4.0.9001-red.svg?style=flat-square" alt="GitHub Version" /></a>
<br/>
<a href="LICENSE.md" id="license" title="License"><img src="https://img.shields.io/badge/Licence-MIT-blue.svg" alt="License" /></a>
<a href="https://travis-ci.org/oeysan/bfw" id="travis" title="Build Status"><img src="https://travis-ci.org/oeysan/bfw.svg?branch=master" alt="Build Status" /></a>
@@ -42,9 +43,9 @@ List of current modules
-----------------------

- Bernoulli trials
- Covariate estimations (including correlation and Cronbach's alpha)
- Covariate estimations (including correlation and Cronbachs alpha)
- Fit observed and latent data (e.g., SEM, CFA, mediation models)
- Bayesian equivalent of Cohen's kappa
- Bayesian equivalent of Cohens kappa
- Mean and standard deviation estimations
- Predict metric values (cf., ANOVA)
- Predict nominal values (cf., chi-square test)
@@ -62,8 +63,10 @@ List of current visualizations
Prerequisites
-------------

- JAGS (&gt;=4.3.0): <http://mcmc-jags.sourceforge.net/>
- Java JDK (&gt;=1.4): <https://www.java.com/en/download/manual.jsp>
- JAGS (&gt;=4.3.0):
<a href="http://mcmc-jags.sourceforge.net/" class="uri">http://mcmc-jags.sourceforge.net/</a>
- Java JDK (&gt;=1.4):
<a href="https://www.java.com/en/download/manual.jsp" class="uri">https://www.java.com/en/download/manual.jsp</a>

Dependencies
------------
@@ -265,7 +268,7 @@ The cost of conducting robust estimates

# Running time for normal distribution analyis
biased.mcmc$run.time[2] - biased.mcmc$run.time[1]
#> Time difference of 7.66 secs
#> Time difference of 7.67 secs

# Running time for t-distribution analysis
biased.mcmc.robust$run.time[2] - biased.mcmc.robust$run.time[1]
@@ -289,14 +292,16 @@ References

- Gelman, A., & Rubin, D. B. (1992). Inference from Iterative
Simulation Using Multiple Sequences. *Statistical Science*, *7*(4),
457-472. <https://doi.org/10.1214/ss/1177011136>
457-472.
<a href="https://doi.org/10.1214/ss/1177011136" class="uri">https://doi.org/10.1214/ss/1177011136</a>
- Kruschke, J. K. (2013). Posterior predictive checks can and should
be Bayesian: Comment on Gelman and Shalizi, 'Philosophy and the
practice of Bayesian statistics'. *British Journal of Mathematical
be Bayesian: Comment on Gelman and Shalizi, Philosophy and the
practice of Bayesian statistics. *British Journal of Mathematical
and Statistical Psychology*, *66*(1), 4556.
<https://doi.org/10.1111/j.2044-8317.2012.02063.x>
<a href="https://doi.org/10.1111/j.2044-8317.2012.02063.x" class="uri">https://doi.org/10.1111/j.2044-8317.2012.02063.x</a>
- Kruschke, J. K. (2015). *Doing Bayesian data analysis: a tutorial
with R, JAGS, and Stan*. Academic Press: Boston.
- Plummer, M. (2003). JAGS A program for analysis of Bayesian
graphical models using Gibbs sampling (Version 4.3.0). Retrieved
from <http://mcmc-jags.sourceforge.net/>
from
<a href="http://mcmc-jags.sourceforge.net/" class="uri">http://mcmc-jags.sourceforge.net/</a>

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