Skip to content
master
Switch branches/tags
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
cmd
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
tes
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Build Status Gitter License: MIT Godoc

Funnel

https://ohsu-comp-bio.github.io/funnel/

Funnel is a toolkit for distributed, batch task execution, including a server, worker, and a set of compute, storage, and database backends. Given a task description, Funnel will find a worker to execute the task, download inputs, run a series of (Docker) containers, upload outputs, capture logs, and track the whole process.

Funnel is an implementation of the GA4GH Task Execution Schemas, an effort to standardize the APIs used for task execution across many platforms.

Funnel provides an API server, multiple storage backends (local FS, S3, Google Bucket, etc.), multiple compute backends (local, HTCondor, Google Cloud, etc.), and a web dashboard.