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@okadalabipr

Okada Lab

Laboratory for Cell Systems, Institute for Protein Research, Osaka University

Pinned

  1. biomass Public

    Forked from biomass-dev/biomass

    A Python Framework for Modeling and Analysis of Signaling Systems

    Python 1 1

  2. pasmopy Public

    Forked from pasmopy/pasmopy

    Patient-Specific Modeling in Python

    Python

  3. ASURAT Public

    Forked from keita-iida/ASURAT

    ASURAT: functional annotation-driven unsupervised clustering of single-cell transcriptomes

    R

Repositories

  • biomass Public

    A Python Framework for Modeling and Analysis of Signaling Systems

    Python 1 Apache-2.0 9 0 0 Updated Jul 1, 2022
  • pasmopy Public

    Patient-Specific Modeling in Python

    Python 0 Apache-2.0 2 0 0 Updated Jun 16, 2022
  • Wibisana2021 Public

    Imaging and single cell sequencing analyses of super-enhancer activation mediated by NF-κB in B cells (Wibisana, JN et al., 2021)

    R 2 MIT 0 0 0 Updated Jun 2, 2022
  • ASURAT Public

    ASURAT: functional annotation-driven unsupervised clustering of single-cell transcriptomes

    R 0 GPL-3.0 1 0 0 Updated Jun 1, 2022
  • findfoci Public

    ImageJ2 and R package for quantitative analysis of NF-κB foci

    ImageJ Macro 0 1 0 0 Updated Mar 3, 2022
  • Ando2021 Public

    Ando, M. et al. IκBα is required for full transcriptional induction of some NFκB-regulated genes in response to TNF in MCF-7 cells. npj Syst Biol Appl 7, 42 (2021).

    R 0 MIT 0 0 0 Updated Jan 14, 2022
  • ccle_extractor Public

    Python script for extracting dataset from CCLE (Cancer Cell Line Encyclopedia)

    Python 4 MIT 3 0 0 Updated Jul 15, 2021
  • Kanazawa2021 Public

    Cell shape‐based chemical screening reveals an epigenetic network mediated by focal adhesions

    R 0 MIT 0 0 0 Updated Mar 11, 2021
  • Imoto_Cancers_2020 Public

    Imoto, H., Zhang, S. & Okada, M. A Computational Framework for Prediction and Analysis of Cancer Signaling Dynamics from RNA Sequencing Data—Application to the ErbB Receptor Signaling Pathway. Cancers (Basel). 12, 2878 (2020).

    Python 0 MIT 0 0 0 Updated Oct 10, 2020
  • Inoue2016 Public

    Inoue, K. et al. Oscillation dynamics underlie functional switching of NF-κB for B-cell activation. npj Syst. Biol. Appl. 2, 16024 (2016).

    Julia 0 MIT 1 0 0 Updated Aug 25, 2020
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