diff --git a/CHANGELOG.md b/CHANGELOG.md
index cec0fc2..332f771 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,10 +1,18 @@
-
-# 0.1.9 — 2022-10-21
+
+# 0.1.11 — 2022-10-21
+
+## Removed
+
+- unnecessary torchvision dependency
+
+
+# 0.1.10 — 2022-10-21
## Removed
- torch-optimizer removed from the optional dependency list. Started to cause headache.
+
# 0.1.9 — 2022-10-21
diff --git a/cellseg_models_pytorch/__init__.py b/cellseg_models_pytorch/__init__.py
index 60b98f9..dbfd556 100644
--- a/cellseg_models_pytorch/__init__.py
+++ b/cellseg_models_pytorch/__init__.py
@@ -1,7 +1,7 @@
from . import inference, models, utils
from .models import CellPoseUnet, HoverNet, StarDistUnet
-__version__ = "0.1.10"
+__version__ = "0.1.11"
submodules = ["utils", "models", "inference"]
__all__ = [
"__version__",
diff --git a/poetry.lock b/poetry.lock
index 9280509..22fb4bc 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -882,11 +882,11 @@ virtualenv = ">=20.0.8"
[[package]]
name = "protobuf"
-version = "3.20.1"
+version = "3.19.6"
description = "Protocol Buffers"
category = "main"
optional = true
-python-versions = ">=3.7"
+python-versions = ">=3.5"
[[package]]
name = "py"
@@ -1056,7 +1056,7 @@ six = ">=1.5"
[[package]]
name = "pytorch-lightning"
-version = "1.6.5"
+version = "1.7.7"
description = "PyTorch Lightning is the lightweight PyTorch wrapper for ML researchers. Scale your models. Write less boilerplate."
category = "main"
optional = true
@@ -1066,27 +1066,26 @@ python-versions = ">=3.7"
fsspec = {version = ">=2021.05.0,<2021.06.0 || >2021.06.0", extras = ["http"]}
numpy = ">=1.17.2"
packaging = ">=17.0"
-protobuf = "<=3.20.1"
pyDeprecate = ">=0.3.1"
PyYAML = ">=5.4"
-tensorboard = ">=2.2.0"
-torch = ">=1.8"
-torchmetrics = ">=0.4.1"
+tensorboard = ">=2.9.1"
+torch = ">=1.9"
+torchmetrics = ">=0.7.0"
tqdm = ">=4.57.0"
typing-extensions = ">=4.0.0"
[package.extras]
-all = ["cloudpickle (>=1.3)", "codecov (>=2.1)", "comet-ml (>=3.1.12)", "coverage (>=6.4)", "deepspeed", "fairscale (>=0.4.5)", "flake8 (>=3.9.2)", "gcsfs (>=2021.5.0)", "gym[classic_control] (>=0.17.0)", "hivemind (>=1.0.1)", "horovod (>=0.21.2,!=0.24.0)", "hydra-core (>=1.0.5)", "ipython[all]", "jsonargparse[signatures] (>=4.7.1)", "matplotlib (>3.1)", "mlflow (>=1.0.0)", "mypy (>=0.920)", "neptune-client (>=0.10.0)", "omegaconf (>=2.0.5)", "onnxruntime", "pandas", "pre-commit (>=1.0)", "pytest (>=6.0)", "pytest-forked", "pytest-rerunfailures (>=10.2)", "rich (>=10.2.2,!=10.15.0.a)", "scikit-learn (>0.22.1)", "test-tube (>=0.7.5)", "torchtext (>=0.9)", "torchvision (>=0.9)", "wandb (>=0.8.21)"]
-deepspeed = ["deepspeed"]
-dev = ["cloudpickle (>=1.3)", "codecov (>=2.1)", "comet-ml (>=3.1.12)", "coverage (>=6.4)", "flake8 (>=3.9.2)", "gcsfs (>=2021.5.0)", "hydra-core (>=1.0.5)", "jsonargparse[signatures] (>=4.7.1)", "matplotlib (>3.1)", "mlflow (>=1.0.0)", "mypy (>=0.920)", "neptune-client (>=0.10.0)", "omegaconf (>=2.0.5)", "onnxruntime", "pandas", "pre-commit (>=1.0)", "pytest (>=6.0)", "pytest-forked", "pytest-rerunfailures (>=10.2)", "rich (>=10.2.2,!=10.15.0.a)", "scikit-learn (>0.22.1)", "test-tube (>=0.7.5)", "torchtext (>=0.9)", "wandb (>=0.8.21)"]
-examples = ["gym[classic_control] (>=0.17.0)", "ipython[all]", "torchvision (>=0.9)"]
-extra = ["gcsfs (>=2021.5.0)", "hydra-core (>=1.0.5)", "jsonargparse[signatures] (>=4.7.1)", "matplotlib (>3.1)", "omegaconf (>=2.0.5)", "rich (>=10.2.2,!=10.15.0.a)", "torchtext (>=0.9)"]
+all = ["cloudpickle (>=1.3)", "codecov (>=2.1)", "comet-ml (>=3.1.12)", "coverage (>=6.4)", "deepspeed (>=0.6.0)", "fairscale (>=0.4.5)", "fastapi", "gcsfs (>=2021.5.0)", "gym[classic_control] (>=0.17.0)", "hivemind (>=1.0.1)", "horovod (>=0.21.2,!=0.24.0)", "hydra-core (>=1.0.5)", "ipython[all]", "jsonargparse[signatures] (>=4.12.0)", "matplotlib (>3.1)", "mlflow (>=1.0.0)", "mypy (==0.971)", "neptune-client (>=0.10.0)", "omegaconf (>=2.0.5)", "onnxruntime", "pandas (>1.0)", "pre-commit (>=1.0)", "protobuf (<=3.20.1)", "psutil", "pytest (>=7.0)", "pytest-cov", "pytest-forked", "pytest-rerunfailures (>=10.2)", "rich (>=10.14.0,!=10.15.0.a)", "scikit-learn (>0.22.1)", "torchtext (>=0.10)", "torchvision (>=0.10)", "uvicorn", "wandb (>=0.10.22)"]
+deepspeed = ["deepspeed (>=0.6.0)"]
+dev = ["cloudpickle (>=1.3)", "codecov (>=2.1)", "comet-ml (>=3.1.12)", "coverage (>=6.4)", "fastapi", "gcsfs (>=2021.5.0)", "hydra-core (>=1.0.5)", "jsonargparse[signatures] (>=4.12.0)", "matplotlib (>3.1)", "mlflow (>=1.0.0)", "mypy (==0.971)", "neptune-client (>=0.10.0)", "omegaconf (>=2.0.5)", "onnxruntime", "pandas (>1.0)", "pre-commit (>=1.0)", "protobuf (<=3.20.1)", "psutil", "pytest (>=7.0)", "pytest-cov", "pytest-forked", "pytest-rerunfailures (>=10.2)", "rich (>=10.14.0,!=10.15.0.a)", "scikit-learn (>0.22.1)", "torchtext (>=0.10)", "uvicorn", "wandb (>=0.10.22)"]
+examples = ["gym[classic_control] (>=0.17.0)", "ipython[all]", "torchvision (>=0.10)"]
+extra = ["gcsfs (>=2021.5.0)", "hydra-core (>=1.0.5)", "jsonargparse[signatures] (>=4.12.0)", "matplotlib (>3.1)", "omegaconf (>=2.0.5)", "protobuf (<=3.20.1)", "rich (>=10.14.0,!=10.15.0.a)", "torchtext (>=0.10)"]
fairscale = ["fairscale (>=0.4.5)"]
hivemind = ["hivemind (>=1.0.1)"]
horovod = ["horovod (>=0.21.2,!=0.24.0)"]
-loggers = ["comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "neptune-client (>=0.10.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)"]
-strategies = ["deepspeed", "fairscale (>=0.4.5)", "hivemind (>=1.0.1)", "horovod (>=0.21.2,!=0.24.0)"]
-test = ["cloudpickle (>=1.3)", "codecov (>=2.1)", "coverage (>=6.4)", "flake8 (>=3.9.2)", "mypy (>=0.920)", "onnxruntime", "pandas", "pre-commit (>=1.0)", "pytest (>=6.0)", "pytest-forked", "pytest-rerunfailures (>=10.2)", "scikit-learn (>0.22.1)"]
+loggers = ["comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "neptune-client (>=0.10.0)", "wandb (>=0.10.22)"]
+strategies = ["deepspeed (>=0.6.0)", "fairscale (>=0.4.5)", "hivemind (>=1.0.1)", "horovod (>=0.21.2,!=0.24.0)"]
+test = ["cloudpickle (>=1.3)", "codecov (>=2.1)", "coverage (>=6.4)", "fastapi", "mypy (==0.971)", "onnxruntime", "pandas (>1.0)", "pre-commit (>=1.0)", "psutil", "pytest (>=7.0)", "pytest-cov", "pytest-forked", "pytest-rerunfailures (>=10.2)", "scikit-learn (>0.22.1)", "uvicorn"]
[[package]]
name = "PyWavelets"
@@ -1303,7 +1302,7 @@ doc = ["ipython", "numpydoc", "sphinx (>=1.1)", "sphinx-rtd-theme"]
[[package]]
name = "tensorboard"
-version = "2.9.0"
+version = "2.10.1"
description = "TensorBoard lets you watch Tensors Flow"
category = "main"
optional = true
@@ -1316,7 +1315,7 @@ google-auth-oauthlib = ">=0.4.1,<0.5"
grpcio = ">=1.24.3"
markdown = ">=2.6.8"
numpy = ">=1.12.0"
-protobuf = ">=3.9.2"
+protobuf = ">=3.9.2,<3.20"
requests = ">=2.21.0,<3"
setuptools = ">=41.0.0"
tensorboard-data-server = ">=0.6.0,<0.7.0"
@@ -1394,14 +1393,13 @@ python-versions = ">=3.7"
[[package]]
name = "torch"
-version = "1.8.1"
+version = "1.12.1"
description = "Tensors and Dynamic neural networks in Python with strong GPU acceleration"
category = "main"
optional = false
-python-versions = ">=3.6.2"
+python-versions = ">=3.7.0"
[package.dependencies]
-numpy = "*"
typing-extensions = "*"
[[package]]
@@ -1430,16 +1428,18 @@ text = ["nltk (>=3.6)", "regex (>=2021.9.24)", "tqdm (>=4.41.0)"]
[[package]]
name = "torchvision"
-version = "0.9.1"
+version = "0.13.1"
description = "image and video datasets and models for torch deep learning"
category = "main"
optional = false
-python-versions = "*"
+python-versions = ">=3.7"
[package.dependencies]
numpy = "*"
-pillow = ">=4.1.1"
-torch = "1.8.1"
+pillow = ">=5.3.0,<8.3.0 || >=8.4.0"
+requests = "*"
+torch = "1.12.1"
+typing-extensions = "*"
[package.extras]
scipy = ["scipy"]
@@ -1564,7 +1564,7 @@ all = ["pytorch-lightning", "tables", "requests", "albumentations", "geojson", "
[metadata]
lock-version = "1.1"
python-versions = "^3.7.1,<3.11"
-content-hash = "88ad52c2ad6291583d58400add1e90e49be3ff484a260816515d4304ae135533"
+content-hash = "cef750354d07c3f8f43247b2ba7eb0608870f8ec309915306443d1c69c74ee00"
[metadata.files]
absl-py = [
@@ -2492,30 +2492,31 @@ pre-commit = [
{file = "pre_commit-2.20.0.tar.gz", hash = "sha256:a978dac7bc9ec0bcee55c18a277d553b0f419d259dadb4b9418ff2d00eb43959"},
]
protobuf = [
- {file = "protobuf-3.20.1-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:3cc797c9d15d7689ed507b165cd05913acb992d78b379f6014e013f9ecb20996"},
- {file = "protobuf-3.20.1-cp310-cp310-manylinux2014_aarch64.whl", hash = "sha256:ff8d8fa42675249bb456f5db06c00de6c2f4c27a065955917b28c4f15978b9c3"},
- {file = "protobuf-3.20.1-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:cd68be2559e2a3b84f517fb029ee611546f7812b1fdd0aa2ecc9bc6ec0e4fdde"},
- {file = "protobuf-3.20.1-cp310-cp310-win32.whl", hash = "sha256:9016d01c91e8e625141d24ec1b20fed584703e527d28512aa8c8707f105a683c"},
- {file = "protobuf-3.20.1-cp310-cp310-win_amd64.whl", hash = "sha256:32ca378605b41fd180dfe4e14d3226386d8d1b002ab31c969c366549e66a2bb7"},
- {file = "protobuf-3.20.1-cp36-cp36m-macosx_10_9_x86_64.whl", hash = "sha256:9be73ad47579abc26c12024239d3540e6b765182a91dbc88e23658ab71767153"},
- {file = "protobuf-3.20.1-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl", hash = "sha256:097c5d8a9808302fb0da7e20edf0b8d4703274d140fd25c5edabddcde43e081f"},
- {file = "protobuf-3.20.1-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:e250a42f15bf9d5b09fe1b293bdba2801cd520a9f5ea2d7fb7536d4441811d20"},
- {file = "protobuf-3.20.1-cp37-cp37m-manylinux2014_aarch64.whl", hash = "sha256:cdee09140e1cd184ba9324ec1df410e7147242b94b5f8b0c64fc89e38a8ba531"},
- {file = "protobuf-3.20.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl", hash = "sha256:af0ebadc74e281a517141daad9d0f2c5d93ab78e9d455113719a45a49da9db4e"},
- {file = "protobuf-3.20.1-cp37-cp37m-win32.whl", hash = "sha256:755f3aee41354ae395e104d62119cb223339a8f3276a0cd009ffabfcdd46bb0c"},
- {file = "protobuf-3.20.1-cp37-cp37m-win_amd64.whl", hash = "sha256:62f1b5c4cd6c5402b4e2d63804ba49a327e0c386c99b1675c8a0fefda23b2067"},
- {file = "protobuf-3.20.1-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:06059eb6953ff01e56a25cd02cca1a9649a75a7e65397b5b9b4e929ed71d10cf"},
- {file = "protobuf-3.20.1-cp38-cp38-manylinux2014_aarch64.whl", hash = "sha256:cb29edb9eab15742d791e1025dd7b6a8f6fcb53802ad2f6e3adcb102051063ab"},
- {file = "protobuf-3.20.1-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl", hash = "sha256:69ccfdf3657ba59569c64295b7d51325f91af586f8d5793b734260dfe2e94e2c"},
- {file = "protobuf-3.20.1-cp38-cp38-win32.whl", hash = "sha256:dd5789b2948ca702c17027c84c2accb552fc30f4622a98ab5c51fcfe8c50d3e7"},
- {file = "protobuf-3.20.1-cp38-cp38-win_amd64.whl", hash = "sha256:77053d28427a29987ca9caf7b72ccafee011257561259faba8dd308fda9a8739"},
- {file = "protobuf-3.20.1-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:6f50601512a3d23625d8a85b1638d914a0970f17920ff39cec63aaef80a93fb7"},
- {file = "protobuf-3.20.1-cp39-cp39-manylinux2014_aarch64.whl", hash = "sha256:284f86a6207c897542d7e956eb243a36bb8f9564c1742b253462386e96c6b78f"},
- {file = "protobuf-3.20.1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl", hash = "sha256:7403941f6d0992d40161aa8bb23e12575637008a5a02283a930addc0508982f9"},
- {file = "protobuf-3.20.1-cp39-cp39-win32.whl", hash = "sha256:db977c4ca738dd9ce508557d4fce0f5aebd105e158c725beec86feb1f6bc20d8"},
- {file = "protobuf-3.20.1-cp39-cp39-win_amd64.whl", hash = "sha256:7e371f10abe57cee5021797126c93479f59fccc9693dafd6bd5633ab67808a91"},
- {file = "protobuf-3.20.1-py2.py3-none-any.whl", hash = "sha256:adfc6cf69c7f8c50fd24c793964eef18f0ac321315439d94945820612849c388"},
- {file = "protobuf-3.20.1.tar.gz", hash = "sha256:adc31566d027f45efe3f44eeb5b1f329da43891634d61c75a5944e9be6dd42c9"},
+ {file = "protobuf-3.19.6-cp310-cp310-manylinux2014_aarch64.whl", hash = "sha256:010be24d5a44be7b0613750ab40bc8b8cedc796db468eae6c779b395f50d1fa1"},
+ {file = "protobuf-3.19.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:11478547958c2dfea921920617eb457bc26867b0d1aa065ab05f35080c5d9eb6"},
+ {file = "protobuf-3.19.6-cp310-cp310-win32.whl", hash = "sha256:559670e006e3173308c9254d63facb2c03865818f22204037ab76f7a0ff70b5f"},
+ {file = "protobuf-3.19.6-cp310-cp310-win_amd64.whl", hash = "sha256:347b393d4dd06fb93a77620781e11c058b3b0a5289262f094379ada2920a3730"},
+ {file = "protobuf-3.19.6-cp36-cp36m-macosx_10_9_x86_64.whl", hash = "sha256:a8ce5ae0de28b51dff886fb922012dad885e66176663950cb2344c0439ecb473"},
+ {file = "protobuf-3.19.6-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:90b0d02163c4e67279ddb6dc25e063db0130fc299aefabb5d481053509fae5c8"},
+ {file = "protobuf-3.19.6-cp36-cp36m-win32.whl", hash = "sha256:30f5370d50295b246eaa0296533403961f7e64b03ea12265d6dfce3a391d8992"},
+ {file = "protobuf-3.19.6-cp36-cp36m-win_amd64.whl", hash = "sha256:0c0714b025ec057b5a7600cb66ce7c693815f897cfda6d6efb58201c472e3437"},
+ {file = "protobuf-3.19.6-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:5057c64052a1f1dd7d4450e9aac25af6bf36cfbfb3a1cd89d16393a036c49157"},
+ {file = "protobuf-3.19.6-cp37-cp37m-manylinux2014_aarch64.whl", hash = "sha256:bb6776bd18f01ffe9920e78e03a8676530a5d6c5911934c6a1ac6eb78973ecb6"},
+ {file = "protobuf-3.19.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:84a04134866861b11556a82dd91ea6daf1f4925746b992f277b84013a7cc1229"},
+ {file = "protobuf-3.19.6-cp37-cp37m-win32.whl", hash = "sha256:4bc98de3cdccfb5cd769620d5785b92c662b6bfad03a202b83799b6ed3fa1fa7"},
+ {file = "protobuf-3.19.6-cp37-cp37m-win_amd64.whl", hash = "sha256:aa3b82ca1f24ab5326dcf4ea00fcbda703e986b22f3d27541654f749564d778b"},
+ {file = "protobuf-3.19.6-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:2b2d2913bcda0e0ec9a784d194bc490f5dc3d9d71d322d070b11a0ade32ff6ba"},
+ {file = "protobuf-3.19.6-cp38-cp38-manylinux2014_aarch64.whl", hash = "sha256:d0b635cefebd7a8a0f92020562dead912f81f401af7e71f16bf9506ff3bdbb38"},
+ {file = "protobuf-3.19.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:7a552af4dc34793803f4e735aabe97ffc45962dfd3a237bdde242bff5a3de684"},
+ {file = "protobuf-3.19.6-cp38-cp38-win32.whl", hash = "sha256:0469bc66160180165e4e29de7f445e57a34ab68f49357392c5b2f54c656ab25e"},
+ {file = "protobuf-3.19.6-cp38-cp38-win_amd64.whl", hash = "sha256:91d5f1e139ff92c37e0ff07f391101df77e55ebb97f46bbc1535298d72019462"},
+ {file = "protobuf-3.19.6-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:c0ccd3f940fe7f3b35a261b1dd1b4fc850c8fde9f74207015431f174be5976b3"},
+ {file = "protobuf-3.19.6-cp39-cp39-manylinux2014_aarch64.whl", hash = "sha256:30a15015d86b9c3b8d6bf78d5b8c7749f2512c29f168ca259c9d7727604d0e39"},
+ {file = "protobuf-3.19.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:878b4cd080a21ddda6ac6d1e163403ec6eea2e206cf225982ae04567d39be7b0"},
+ {file = "protobuf-3.19.6-cp39-cp39-win32.whl", hash = "sha256:5a0d7539a1b1fb7e76bf5faa0b44b30f812758e989e59c40f77a7dab320e79b9"},
+ {file = "protobuf-3.19.6-cp39-cp39-win_amd64.whl", hash = "sha256:bbf5cea5048272e1c60d235c7bd12ce1b14b8a16e76917f371c718bd3005f045"},
+ {file = "protobuf-3.19.6-py2.py3-none-any.whl", hash = "sha256:14082457dc02be946f60b15aad35e9f5c69e738f80ebbc0900a19bc83734a5a4"},
+ {file = "protobuf-3.19.6.tar.gz", hash = "sha256:5f5540d57a43042389e87661c6eaa50f47c19c6176e8cf1c4f287aeefeccb5c4"},
]
py = [
{file = "py-1.11.0-py2.py3-none-any.whl", hash = "sha256:607c53218732647dff4acdfcd50cb62615cedf612e72d1724fb1a0cc6405b378"},
@@ -2596,8 +2597,8 @@ python-dateutil = [
{file = "python_dateutil-2.8.2-py2.py3-none-any.whl", hash = "sha256:961d03dc3453ebbc59dbdea9e4e11c5651520a876d0f4db161e8674aae935da9"},
]
pytorch-lightning = [
- {file = "pytorch-lightning-1.6.5.tar.gz", hash = "sha256:8d521f2619b9db2ada5bbaf9713330d01460e75a11e4bc0bc2ca25fd37c47c57"},
- {file = "pytorch_lightning-1.6.5-py3-none-any.whl", hash = "sha256:00c9205d26aa354defdd4dd592b2dded33916d6e0c180ccffbb06cf34dc67ccf"},
+ {file = "pytorch-lightning-1.7.7.tar.gz", hash = "sha256:27c2dd01a18db2415168e3fa3775ccb5a1fa1e2961a50439ad9365507fe9d4ae"},
+ {file = "pytorch_lightning-1.7.7-py3-none-any.whl", hash = "sha256:4438b8284d7f7fdb06cf3566a7b5b6f102ac8971cf7bb6d3f1b1de64628241f3"},
]
PyWavelets = [
{file = "PyWavelets-1.3.0-cp310-cp310-macosx_10_13_universal2.whl", hash = "sha256:eebaa9c28600da336743fefd650332460c132792660e70eb09abf343b0664b87"},
@@ -2824,7 +2825,7 @@ tables = [
{file = "tables-3.7.0.tar.gz", hash = "sha256:e92a887ad6f2a983e564a69902de4a7645c30069fc01abd353ec5da255c5e1fe"},
]
tensorboard = [
- {file = "tensorboard-2.9.0-py3-none-any.whl", hash = "sha256:bd78211076dca5efa27260afacfaa96cd05c7db12a6c09cc76a1d6b2987ca621"},
+ {file = "tensorboard-2.10.1-py3-none-any.whl", hash = "sha256:fb9222c1750e2fa35ef170d998a1e229f626eeced3004494a8849c88c15d8c1c"},
]
tensorboard-data-server = [
{file = "tensorboard_data_server-0.6.1-py3-none-any.whl", hash = "sha256:809fe9887682d35c1f7d1f54f0f40f98bb1f771b14265b453ca051e2ce58fca7"},
@@ -2855,44 +2856,51 @@ tomli = [
{file = "tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"},
]
torch = [
- {file = "torch-1.8.1-cp36-cp36m-manylinux1_x86_64.whl", hash = "sha256:f23eeb1a48cc39209d986c418ad7e02227eee973da45c0c42d36b1aec72f4940"},
- {file = "torch-1.8.1-cp36-cp36m-manylinux2014_aarch64.whl", hash = "sha256:4ace9c5bb94d5a7b9582cd089993201658466e9c59ff88bd4e9e08f6f072d1cf"},
- {file = "torch-1.8.1-cp36-cp36m-win_amd64.whl", hash = "sha256:6ffa1e7ae079c7cb828712cb0cdaae5cc4fb87c16a607e6d14526b62c20bcc17"},
- {file = "torch-1.8.1-cp36-none-macosx_10_9_x86_64.whl", hash = "sha256:16f2630d9604c4ee28ea7d6e388e2264cd7bc6031c6ecd796bae3f56b5efa9a3"},
- {file = "torch-1.8.1-cp37-cp37m-manylinux1_x86_64.whl", hash = "sha256:95b7bbbacc3f28fe438f418392ceeae146a01adc03b29d44917d55214ac234c9"},
- {file = "torch-1.8.1-cp37-cp37m-manylinux2014_aarch64.whl", hash = "sha256:55137feb2f5a0dc7aced5bba690dcdb7652054ad3452b09a2bbb59f02a11e9ff"},
- {file = "torch-1.8.1-cp37-cp37m-win_amd64.whl", hash = "sha256:8ad2252bf09833dcf46a536a78544e349b8256a370e03a98627ebfb118d9555b"},
- {file = "torch-1.8.1-cp37-none-macosx_10_9_x86_64.whl", hash = "sha256:1388b30fbd262c1a053d6c9ace73bb0bd8f5871b4892b6f3e02d1d7bc9768563"},
- {file = "torch-1.8.1-cp38-cp38-manylinux1_x86_64.whl", hash = "sha256:e7ad1649adb7dc2a450e70a3e51240b84fa4746c69c8f98989ce0c254f9fba3a"},
- {file = "torch-1.8.1-cp38-cp38-manylinux2014_aarch64.whl", hash = "sha256:3e4190c04dfd89c59bad06d5fe451446643a65e6d2607cc989eb1001ee76e12f"},
- {file = "torch-1.8.1-cp38-cp38-win_amd64.whl", hash = "sha256:5c2e9a33d44cdb93ebd739b127ffd7da786bf5f740539539195195b186a05f6c"},
- {file = "torch-1.8.1-cp38-none-macosx_10_9_x86_64.whl", hash = "sha256:c6ede2ae4dcd8214b63e047efabafa92493605205a947574cf358216ca4e440a"},
- {file = "torch-1.8.1-cp39-cp39-manylinux1_x86_64.whl", hash = "sha256:ce7d435426f3dd14f95710d779aa46e9cd5e077d512488e813f7589fdc024f78"},
- {file = "torch-1.8.1-cp39-cp39-manylinux2014_aarch64.whl", hash = "sha256:a50ea8ed900927fb30cadb63aa7a32fdd59c7d7abe5012348dfbe35a8355c083"},
- {file = "torch-1.8.1-cp39-cp39-win_amd64.whl", hash = "sha256:dac4d10494e74f7e553c92d7263e19ea501742c4825ddd26c4decfa27be95981"},
- {file = "torch-1.8.1-cp39-none-macosx_10_9_x86_64.whl", hash = "sha256:225ee4238c019b28369c71977327deeeb2bd1c6b8557e6fcf631b8866bdc5447"},
+ {file = "torch-1.12.1-cp310-cp310-manylinux1_x86_64.whl", hash = "sha256:9c038662db894a23e49e385df13d47b2a777ffd56d9bcd5b832593fab0a7e286"},
+ {file = "torch-1.12.1-cp310-cp310-manylinux2014_aarch64.whl", hash = "sha256:4e1b9c14cf13fd2ab8d769529050629a0e68a6fc5cb8e84b4a3cc1dd8c4fe541"},
+ {file = "torch-1.12.1-cp310-cp310-win_amd64.whl", hash = "sha256:e9c8f4a311ac29fc7e8e955cfb7733deb5dbe1bdaabf5d4af2765695824b7e0d"},
+ {file = "torch-1.12.1-cp310-none-macosx_10_9_x86_64.whl", hash = "sha256:976c3f997cea38ee91a0dd3c3a42322785414748d1761ef926b789dfa97c6134"},
+ {file = "torch-1.12.1-cp310-none-macosx_11_0_arm64.whl", hash = "sha256:68104e4715a55c4bb29a85c6a8d57d820e0757da363be1ba680fa8cc5be17b52"},
+ {file = "torch-1.12.1-cp37-cp37m-manylinux1_x86_64.whl", hash = "sha256:743784ccea0dc8f2a3fe6a536bec8c4763bd82c1352f314937cb4008d4805de1"},
+ {file = "torch-1.12.1-cp37-cp37m-manylinux2014_aarch64.whl", hash = "sha256:b5dbcca369800ce99ba7ae6dee3466607a66958afca3b740690d88168752abcf"},
+ {file = "torch-1.12.1-cp37-cp37m-win_amd64.whl", hash = "sha256:f3b52a634e62821e747e872084ab32fbcb01b7fa7dbb7471b6218279f02a178a"},
+ {file = "torch-1.12.1-cp37-none-macosx_10_9_x86_64.whl", hash = "sha256:8a34a2fbbaa07c921e1b203f59d3d6e00ed379f2b384445773bd14e328a5b6c8"},
+ {file = "torch-1.12.1-cp37-none-macosx_11_0_arm64.whl", hash = "sha256:42f639501928caabb9d1d55ddd17f07cd694de146686c24489ab8c615c2871f2"},
+ {file = "torch-1.12.1-cp38-cp38-manylinux1_x86_64.whl", hash = "sha256:0b44601ec56f7dd44ad8afc00846051162ef9c26a8579dda0a02194327f2d55e"},
+ {file = "torch-1.12.1-cp38-cp38-manylinux2014_aarch64.whl", hash = "sha256:cd26d8c5640c3a28c526d41ccdca14cf1cbca0d0f2e14e8263a7ac17194ab1d2"},
+ {file = "torch-1.12.1-cp38-cp38-win_amd64.whl", hash = "sha256:42e115dab26f60c29e298559dbec88444175528b729ae994ec4c65d56fe267dd"},
+ {file = "torch-1.12.1-cp38-none-macosx_10_9_x86_64.whl", hash = "sha256:a8320ba9ad87e80ca5a6a016e46ada4d1ba0c54626e135d99b2129a4541c509d"},
+ {file = "torch-1.12.1-cp38-none-macosx_11_0_arm64.whl", hash = "sha256:03e31c37711db2cd201e02de5826de875529e45a55631d317aadce2f1ed45aa8"},
+ {file = "torch-1.12.1-cp39-cp39-manylinux1_x86_64.whl", hash = "sha256:9b356aea223772cd754edb4d9ecf2a025909b8615a7668ac7d5130f86e7ec421"},
+ {file = "torch-1.12.1-cp39-cp39-manylinux2014_aarch64.whl", hash = "sha256:6cf6f54b43c0c30335428195589bd00e764a6d27f3b9ba637aaa8c11aaf93073"},
+ {file = "torch-1.12.1-cp39-cp39-win_amd64.whl", hash = "sha256:f00c721f489089dc6364a01fd84906348fe02243d0af737f944fddb36003400d"},
+ {file = "torch-1.12.1-cp39-none-macosx_10_9_x86_64.whl", hash = "sha256:bfec2843daa654f04fda23ba823af03e7b6f7650a873cdb726752d0e3718dada"},
+ {file = "torch-1.12.1-cp39-none-macosx_11_0_arm64.whl", hash = "sha256:69fe2cae7c39ccadd65a123793d30e0db881f1c1927945519c5c17323131437e"},
]
torchmetrics = [
{file = "torchmetrics-0.10.0-py3-none-any.whl", hash = "sha256:1e99ee7379f8ff7e383383513ae0594bc5424de83b43e36c6ce12d464f1635b9"},
{file = "torchmetrics-0.10.0.tar.gz", hash = "sha256:990bafc7f76d7442894533771d0ba7492dbca2bbf2989fb32de7e9c68eb3d133"},
]
torchvision = [
- {file = "torchvision-0.9.1-cp36-cp36m-macosx_10_9_x86_64.whl", hash = "sha256:da4c4f7363b60b0637354974ea0a29dbc301f66c9f25d92ed5f10637909f3500"},
- {file = "torchvision-0.9.1-cp36-cp36m-manylinux1_x86_64.whl", hash = "sha256:8a937cd3b53656e15de03671f8a638b5e8e4c100725b854d73bdb51e41455e9e"},
- {file = "torchvision-0.9.1-cp36-cp36m-manylinux2014_aarch64.whl", hash = "sha256:f16ceec2862faaffc8fc19bca20e0e79ffdab18a53e6cb75e42e33d090e80d04"},
- {file = "torchvision-0.9.1-cp36-cp36m-win_amd64.whl", hash = "sha256:99cd75163938b4b3728815696d75c0df8b66390c489abed2365a530a040059a1"},
- {file = "torchvision-0.9.1-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:8aa438869e3033cbd8749d041d1ca7beb6171ca9f7f47b42e742fabd6900f8fc"},
- {file = "torchvision-0.9.1-cp37-cp37m-manylinux1_x86_64.whl", hash = "sha256:a1421a26b21b8c098935c3375182470c4c4d99d5e14d81ec3ac14a35e7a85285"},
- {file = "torchvision-0.9.1-cp37-cp37m-manylinux2014_aarch64.whl", hash = "sha256:b14b5b7fed0b7dc6245c2608b9fd2262d5b375ba998e097b980a1046683ca7f6"},
- {file = "torchvision-0.9.1-cp37-cp37m-win_amd64.whl", hash = "sha256:86e4facb1cf4670ab3d67b7a947f0c43cd0805ec269a5e22ad0b82be727bcb3b"},
- {file = "torchvision-0.9.1-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:d38d0d23c6ce6ba15eba094a9319393e429796ab2bab228fa3b996abc9e33c3f"},
- {file = "torchvision-0.9.1-cp38-cp38-manylinux1_x86_64.whl", hash = "sha256:0bfcc3ab99128081bfc9a5c3ab31f5227c4df3b802e6d4217dac104bf5ba8636"},
- {file = "torchvision-0.9.1-cp38-cp38-manylinux2014_aarch64.whl", hash = "sha256:85f21862e504590eb4a77b1d9a1742156a296af55827fb8c82296601922b7ac1"},
- {file = "torchvision-0.9.1-cp38-cp38-win_amd64.whl", hash = "sha256:dda0dcb914bcab1a43f823348736b8b1c926bf1fbe9cbb3be892fdbe2ab6d097"},
- {file = "torchvision-0.9.1-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:091812c9fa405bef12aca9b9c3e671fcae7c0a4945b68705534ba8a401396ad1"},
- {file = "torchvision-0.9.1-cp39-cp39-manylinux1_x86_64.whl", hash = "sha256:46b82b6cdccd2cb982819165b6ddaa097629315377ba6bbf77bdcb02c2e83692"},
- {file = "torchvision-0.9.1-cp39-cp39-manylinux2014_aarch64.whl", hash = "sha256:92c936584e03dfca39ff31bbc4a4fb54edb08fe8362e75dc08a2fa4b43266068"},
- {file = "torchvision-0.9.1-cp39-cp39-win_amd64.whl", hash = "sha256:42bec9b8e8a1dcd478751457191f317f843fa463555c141994c809c4b11ad60d"},
+ {file = "torchvision-0.13.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:19286a733c69dcbd417b86793df807bd227db5786ed787c17297741a9b0d0fc7"},
+ {file = "torchvision-0.13.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:08f592ea61836ebeceb5c97f4d7a813b9d7dc651bbf7ce4401563ccfae6a21fc"},
+ {file = "torchvision-0.13.1-cp310-cp310-manylinux1_x86_64.whl", hash = "sha256:ef5fe3ec1848123cd0ec74c07658192b3147dcd38e507308c790d5943e87b88c"},
+ {file = "torchvision-0.13.1-cp310-cp310-manylinux2014_aarch64.whl", hash = "sha256:099874088df104d54d8008f2a28539ca0117b512daed8bf3c2bbfa2b7ccb187a"},
+ {file = "torchvision-0.13.1-cp310-cp310-win_amd64.whl", hash = "sha256:8e4d02e4d8a203e0c09c10dfb478214c224d080d31efc0dbf36d9c4051f7f3c6"},
+ {file = "torchvision-0.13.1-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:5e631241bee3661de64f83616656224af2e3512eb2580da7c08e08b8c965a8ac"},
+ {file = "torchvision-0.13.1-cp37-cp37m-manylinux1_x86_64.whl", hash = "sha256:899eec0b9f3b99b96d6f85b9aa58c002db41c672437677b553015b9135b3be7e"},
+ {file = "torchvision-0.13.1-cp37-cp37m-manylinux2014_aarch64.whl", hash = "sha256:83e9e2457f23110fd53b0177e1bc621518d6ea2108f570e853b768ce36b7c679"},
+ {file = "torchvision-0.13.1-cp37-cp37m-win_amd64.whl", hash = "sha256:7552e80fa222252b8b217a951c85e172a710ea4cad0ae0c06fbb67addece7871"},
+ {file = "torchvision-0.13.1-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:f230a1a40ed70d51e463ce43df243ec520902f8725de2502e485efc5eea9d864"},
+ {file = "torchvision-0.13.1-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:e9a563894f9fa40692e24d1aa58c3ef040450017cfed3598ff9637f404f3fe3b"},
+ {file = "torchvision-0.13.1-cp38-cp38-manylinux1_x86_64.whl", hash = "sha256:7cb789ceefe6dcd0dc8eeda37bfc45efb7cf34770eac9533861d51ca508eb5b3"},
+ {file = "torchvision-0.13.1-cp38-cp38-manylinux2014_aarch64.whl", hash = "sha256:87c137f343197769a51333076e66bfcd576301d2cd8614b06657187c71b06c4f"},
+ {file = "torchvision-0.13.1-cp38-cp38-win_amd64.whl", hash = "sha256:4d8bf321c4380854ef04613935fdd415dce29d1088a7ff99e06e113f0efe9203"},
+ {file = "torchvision-0.13.1-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:0298bae3b09ac361866088434008d82b99d6458fe8888c8df90720ef4b347d44"},
+ {file = "torchvision-0.13.1-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:c5ed609c8bc88c575226400b2232e0309094477c82af38952e0373edef0003fd"},
+ {file = "torchvision-0.13.1-cp39-cp39-manylinux1_x86_64.whl", hash = "sha256:3567fb3def829229ec217c1e38f08c5128ff7fb65854cac17ebac358ff7aa309"},
+ {file = "torchvision-0.13.1-cp39-cp39-manylinux2014_aarch64.whl", hash = "sha256:b167934a5943242da7b1e59318f911d2d253feeca0d13ad5d832b58eed943401"},
+ {file = "torchvision-0.13.1-cp39-cp39-win_amd64.whl", hash = "sha256:0e77706cc90462653620e336bb90daf03d7bf1b88c3a9a3037df8d111823a56e"},
]
tqdm = [
{file = "tqdm-4.64.1-py2.py3-none-any.whl", hash = "sha256:6fee160d6ffcd1b1c68c65f14c829c22832bc401726335ce92c52d395944a6a1"},
diff --git a/pyproject.toml b/pyproject.toml
index b132615..d767074 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
[tool.poetry]
name = "cellseg_models_pytorch"
-version = "0.1.10"
+version = "0.1.11"
description = "Python library for 2D cell/nuclei instance segmentation models written with PyTorch."
authors = ["Okunator "]
license = "MIT"
@@ -13,8 +13,8 @@ keywords = ["cell segmentation", "nuclei segmentation", "pytorch", "pytorch-ligh
[tool.poetry.dependencies]
python = "^3.7.1,<3.11"
torch = "^1.8.1"
-torchvision = "^0.9.1"
-numpy = "^1.21"
+# torchvision = "^0.9.1"
+numpy = "^1.21,<1.22"
scipy = "^1.7"
scikit-image = "^0.19"
pathos = "^0.2.8"