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Removed libsvm jars and depend on libsvm plugin.

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commit 8001323b97072b682dfcbbf50a737a6bce1b79c0 1 parent 5057a6d
@olas authored
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1  plugins/net.bioclipse.ds.bursi.signatures/.classpath
@@ -3,6 +3,5 @@
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/J2SE-1.5"/>
<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
<classpathentry kind="src" path="src"/>
- <classpathentry exported="true" kind="lib" path="jars/libsvm.jar" sourcepath="net.bioclipse.ds.signsig.bursisrc.zip"/>
<classpathentry kind="output" path="bin"/>
</classpath>
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6 plugins/net.bioclipse.ds.bursi.signatures/META-INF/MANIFEST.MF
@@ -23,9 +23,9 @@ Require-Bundle: org.eclipse.ui,
net.bioclipse.ds.signatures,
net.bioclipse.ds.ui,
net.bioclipse.ds.common;bundle-version="0.1.1",
- org.eclipse.core.resources;bundle-version="3.5.2"
+ org.eclipse.core.resources;bundle-version="3.5.2",
+ net.bioclipse.ds.libsvm;bundle-version="1.0.0"
Bundle-RequiredExecutionEnvironment: J2SE-1.5
Bundle-ActivationPolicy: lazy
Import-Package: org.apache.log4j
-Bundle-ClassPath: .,
- jars/libsvm.jar
+Bundle-ClassPath: .
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1  plugins/net.bioclipse.ds.bursi.signatures/build.properties
@@ -4,7 +4,6 @@ bin.includes = META-INF/,\
.,\
plugin.xml,\
jars/,\
- jars/libsvm.jar,\
data/,\
exec/,\
icons/,\
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BIN  plugins/net.bioclipse.ds.bursi.signatures/jars/libsvm.jar
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12 plugins/net.bioclipse.ds.bursi.signatures/src/net/bioclipse/ds/bursi/signatures/SignSIgRunner.java
@@ -26,10 +26,7 @@
import org.eclipse.core.runtime.IProgressMonitor;
import org.eclipse.core.runtime.Platform;
import org.openscience.cdk.interfaces.IAtom;
-import org.openscience.cdk.interfaces.IAtomContainer;
-import net.bioclipse.cdk.business.Activator;
-import net.bioclipse.cdk.business.ICDKManager;
import net.bioclipse.cdk.domain.ICDKMolecule;
import net.bioclipse.core.business.BioclipseException;
import net.bioclipse.core.domain.IMolecule;
@@ -38,14 +35,15 @@
import net.bioclipse.ds.model.IDSTest;
import net.bioclipse.ds.model.ITestResult;
import net.bioclipse.ds.model.result.PosNegIncMatch;
-import net.bioclipse.ds.model.result.ScaledResultMatch;
-import net.bioclipse.ds.model.result.SubStructureMatch;
import net.bioclipse.ds.signatures.business.ISignaturesManager;
+/**
+ *
+ * @author Ola Spjuth, Lars Carlsson, Martin Eklund
+ *
+ */
public class SignSIgRunner extends AbstractDSTest implements IDSTest{
-
-
//The logger of the class
private static final Logger logger = Logger.getLogger(SignSIgRunner.class);
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1  plugins/net.bioclipse.ds.cpdb.signatures/.classpath
@@ -3,6 +3,5 @@
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/J2SE-1.5"/>
<classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
<classpathentry kind="src" path="src"/>
- <classpathentry exported="true" kind="lib" path="jars/libsvm.jar"/>
<classpathentry kind="output" path="bin"/>
</classpath>
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6 plugins/net.bioclipse.ds.cpdb.signatures/META-INF/MANIFEST.MF
@@ -17,9 +17,9 @@ Require-Bundle: org.eclipse.ui,
net.bioclipse.cdk.business,
org.openscience.cdk.interfaces,
net.bioclipse.ds.signatures,
- org.eclipse.core.resources;bundle-version="3.5.2"
+ org.eclipse.core.resources;bundle-version="3.5.2",
+ net.bioclipse.ds.libsvm;bundle-version="2.91.0"
Bundle-RequiredExecutionEnvironment: J2SE-1.5
Bundle-ActivationPolicy: lazy
-Bundle-ClassPath: jars/libsvm.jar,
- .
+Bundle-ClassPath: .
Import-Package: org.apache.log4j
View
1  plugins/net.bioclipse.ds.cpdb.signatures/build.properties
@@ -3,7 +3,6 @@ output.. = bin/
bin.includes = META-INF/,\
.,\
plugin.xml,\
- jars/libsvm.jar,\
data/,\
exec/,\
icons/,\
View
BIN  plugins/net.bioclipse.ds.cpdb.signatures/jars/libsvm.jar
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