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@YeoLab @czbiohub
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Pinned

  1. Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data

    Python 36 20

  2. kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths

    Jupyter Notebook 7 2

  3. PoshSplice is a collection of scripts and functions used to annotate splicing events, exons, and their functional consequences

    Python 4 1

  4. Statistical data visualization using matplotlib

    Python 6.2k 1k

  5. Painlessly create beautiful matplotlib plots.

    Python 1.5k 139

  6. Reproducible machine learning analysis of gene expression and alternative splicing data

    Jupyter Notebook 109 24

2,169 contributions in the last year

Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr May Jun Mon Wed Fri

Contribution activity

June 2019

Created a pull request in nf-core/rnaseq that received 14 comments

GENCODE annotation compatibility with salmon

Adds --gencode flag which splits the fasta IDs on |, e.g. ENST00000601814.5|ENSG00000237094.12|OTTHUMG00000002857.7|OTTHUMT00000462548.1|AL732372.2…

+10 −6 14 comments

Created an issue in alexdobin/STAR that received 6 comments

STARsolo output more logged stats for visualization

Hello, I'm adding STARsolo to nf-core/scrnaseq and would like to have a nice MultiQC report from the STARsolo output that mimicks the existing Cell…

6 comments
16 contributions in private repositories Jun 4 – Jun 25

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