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Capture-recapture models in JAGS

This repository contains the material (slides, data and R code) I used for a workshop on Integrated Population Models (IPMs) we held online 23 – 27 November 2020. This workshop was co-taught by Michael Schaub, Marc Kéry, Olivier Gimenez and Maud Quéroué.

I introduce capture-recapture models in a state-space / hidden Markov modeling framework. I also show how to fit these models in Jags. I cover Cormack-Jolly-Seber, Arnason-Schwarz, multistate and multievent models.

🎥 The video recordings are available on Youtube here.

Contents

The directory contains:

  • 📁 slides: Slides of the lectures. Adapted from Michael Schaub’s slides.
  • 📁 codes: R codes used for the live demo in the lectures, as well as for the practicals.
  • 📁 dat: Data used in the practicals.
  • 📁 papers: PDFs of the papers cited in the lectures.

You can download the material as a zip file from here.

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Material for the 2020 workshop on Bayesian integrated population modeling (IPM) using JAGS

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