From ea34ac3869f9e573faf61c88c21df6860eae4119 Mon Sep 17 00:00:00 2001 From: Talley Lambert Date: Mon, 5 Jan 2026 15:03:15 -0500 Subject: [PATCH 1/4] add yaozarrs --- resources/tools/index.md | 1 + 1 file changed, 1 insertion(+) diff --git a/resources/tools/index.md b/resources/tools/index.md index 2dc4365b..a3019ff4 100644 --- a/resources/tools/index.md +++ b/resources/tools/index.md @@ -88,6 +88,7 @@ Want to validate a Zarr? Use one of these. | -------- | ------- | ------- | | ome-ngff-validator | [OME NGFF Validator logo](https://ome.github.io/ome-ngff-validator/) | Web page for validating OME-Zarr files. | | ome-zarr-models | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/ome-zarr-models/ome-zarr-models-py) | Python package and command line interface that can validate OME-Zarr files | +| yaozarrs | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/tlambert03/yaozarrs) | Bottom-up python library with models and CLI for creating & validating OME-Zarr groups and documents | ## Other tools and libraries From d337cf42da206b83d133b745f11f86d7f8f58174 Mon Sep 17 00:00:00 2001 From: Talley Lambert Date: Mon, 5 Jan 2026 15:03:29 -0500 Subject: [PATCH 2/4] add yaozarrs --- resources/tools/index.md | 1 + 1 file changed, 1 insertion(+) diff --git a/resources/tools/index.md b/resources/tools/index.md index a3019ff4..9a1a95a3 100644 --- a/resources/tools/index.md +++ b/resources/tools/index.md @@ -79,6 +79,7 @@ Want to read or write a Zarr? Use one of these tools. | ngio | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://biovisioncenter.github.io/ngio/stable/) | Python package for bject-based API for opening, exploring, and manipulating OME-Zarr images and high-content screening (HCS) plates | | ngff-zarr | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/thewtex/ngff-zarr) | A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation. | | ome-zarr-py | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/ome/ome-zarr-py)| A Python library for reading and writing multi-resolution images stored as Zarr filesets, according to the OME-Zarr spec. | +| yaozarrs | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/tlambert03/yaozarrs) | Minimal, model-first python library with optional extras for array-backend-agnostic I/O (zarr-python, tensorstore, etc...) | ### Zarr validation From 3b1a16deb080e12139c366c07eecc2a1a7901191 Mon Sep 17 00:00:00 2001 From: Talley Lambert Date: Tue, 6 Jan 2026 09:41:08 -0500 Subject: [PATCH 3/4] update --- resources/tools/index.md | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/resources/tools/index.md b/resources/tools/index.md index 675f48d6..7e7702c0 100644 --- a/resources/tools/index.md +++ b/resources/tools/index.md @@ -78,8 +78,7 @@ Want to read or write a Zarr? Use one of these tools. | iohub| [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/czbiohub-sf/iohub) | Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata | | ngio | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://biovisioncenter.github.io/ngio/stable/) | Python package for bject-based API for opening, exploring, and manipulating OME-Zarr images and high-content screening (HCS) plates | | ngff-zarr | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/thewtex/ngff-zarr) | A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation. | -| ome-zarr-py | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/ome/ome-zarr-py)| A Python library for reading and writing multi-resolution images stored as Zarr filesets, according to the OME-Zarr spec. | -| yaozarrs | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/tlambert03/yaozarrs) | Minimal, model-first python library with optional extras for array-backend-agnostic I/O (zarr-python, tensorstore, etc...) | +| ome-zarr-py | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/ome/ome-zarr-py)| A Python library for reading and writing multi-resolution images stored as Zarr filesets, according to the OME-Zarr spec. | ### Zarr validation @@ -89,7 +88,7 @@ Want to validate a Zarr? Use one of these. | -------- | ------- | ------- | | ome-ngff-validator | [OME NGFF Validator logo](https://ome.github.io/ome-ngff-validator/) | Web page for validating OME-Zarr files. | | ome-zarr-models | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/ome-zarr-models/ome-zarr-models-py) | Python package and command line interface that can validate OME-Zarr files | -| yaozarrs | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/tlambert03/yaozarrs) | Bottom-up python library with models and CLI for creating & validating OME-Zarr groups and documents | +| yaozarrs | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/tlambert03/yaozarrs) | Bottom-up python library with models and CLI for creating & validating OME-Zarr groups and documents with optional extras for array-backend-agnostic I/O | ## Other tools and libraries From ace79a63f64d3b2a0456899a5515cf5460bd2a0e Mon Sep 17 00:00:00 2001 From: Talley Lambert Date: Tue, 6 Jan 2026 09:41:32 -0500 Subject: [PATCH 4/4] add back space --- resources/tools/index.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/resources/tools/index.md b/resources/tools/index.md index 7e7702c0..7d5ccb7a 100644 --- a/resources/tools/index.md +++ b/resources/tools/index.md @@ -78,7 +78,7 @@ Want to read or write a Zarr? Use one of these tools. | iohub| [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/czbiohub-sf/iohub) | Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata | | ngio | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://biovisioncenter.github.io/ngio/stable/) | Python package for bject-based API for opening, exploring, and manipulating OME-Zarr images and high-content screening (HCS) plates | | ngff-zarr | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/thewtex/ngff-zarr) | A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation. | -| ome-zarr-py | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/ome/ome-zarr-py)| A Python library for reading and writing multi-resolution images stored as Zarr filesets, according to the OME-Zarr spec. | +| ome-zarr-py | [![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/ome/ome-zarr-py)| A Python library for reading and writing multi-resolution images stored as Zarr filesets, according to the OME-Zarr spec. | ### Zarr validation