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Compliant HCS specification

OME compliant HCS file specification. This was developed in conjunction with the June 2010 release of the OME-XML Model and has been updated to the June 2016 release.

A compliant specification for HCS OME files has been defined. This is not the minimum required for the display of an image, that is the :doc:`Minimum Specification <minimum>`. This is the information a file should contain to be useful while conforming to the spirit of the OME projects aims.

This sample structure is based on Sample One in the OME Compliant File Specification (see :doc:`index`):

.. literalinclude:: hcs.ome.xml

Alternative valid forms:

  • would have a TiffData block instead of the BinData block (this would be used in the header of an OME-TIFF file)
  • would have a MetadataOnly block instead of the BinData block (this would be used as a companion to one or more BinaryOnly OME-TIFF files)


A units system was added in January 2015. This sample assumes the default unit for each value is used.

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