Guide on how to integrate CellProfiler and OMERO
The documentation is deployed at Using CellProfiler
This guide demonstrates how to use the CellProfiler Python API to analyze data stored in IDR or in another OMERO server.
This repository contains documentation and notebooks.
To build locally:
- Install Docker if required
- Create a virtual environment and install repo2docker from PyPI.
- Clone this repository
- Depending on the permissions, you might have to run the command as an admin
pip install jupyter-repo2docker git clone https://github.com/ome/omero-guide-cellprofiler.git cd omero-guide-cellprofiler repo2docker .
This is a Sphinx based documentation. If you are unfamiliar with Sphinx, we recommend that you first read Getting Started with Sphinx.