User guide for Fiji and OMERO
The documentation is deployed at How to use Fiji.
This guide demonstrates how to analyze data stored in OMERO in Fiji. This can be done using the User Interface or via the scripting facility in Fiji.
To build locally:
- Install Docker if required
- Create a virtual environment and install repo2docker from PyPI.
- Clone this repository
- Depending on the permissions, you might have to run the command as an admin
pip install jupyter-repo2docker git clone https://github.com/ome/omero-guide-fiji.git cd omero-guide-fiji repo2docker .
This a Sphinx based documentation. If you are unfamiliar with Sphinx, we recommend that you first read Getting Started with Sphinx.