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Add about.md page and other tweaks
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will-moore committed Aug 17, 2018
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13 changes: 5 additions & 8 deletions README.md
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# training-repos
A super-module of all the repositories used for training sessions

## Data
The files used for workshops below can be found in [data.md](data.md).
This is the main github repository for our training materials.
Previous workshops are listed below, with links to training materials for each.

## Setup
For all repositories, you will want to add an "upstream" remote which contains
the source branch that you are looking to release. Where upstream and
origin are the same, you will likely want both.
* Also see the main OME website [training pages](https://www.openmicroscopy.org/training/).
* For details on the training repositories see, [about.md](about.md).


2018-07-05/06 TOPIM-tech, Chania, Crete
---------------------------------------
A longer workshop on OMERO including Fiji, Orbit, CellProfiler, OMERO.parade and OMERO.figure.
* **Full-day** workshop
* About the workshop [slides](https://downloads.openmicroscopy.org/presentations/2018/TOPIM-Crete/OMERO-Thursday/)
* [Presentation](https://downloads.openmicroscopy.org/presentations/2018/TOPIM-Crete/OMERO-Thursday/) about the workshop
* Workshop intro [slides](https://downloads.openmicroscopy.org/presentations/2018/TOPIM-Crete/OMERO-Friday/)
* Workshop [walkthrough pdf](https://downloads.openmicroscopy.org/presentations/2018/TOPIM-Crete/TOPIM_walkthrough.pdf)

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18 changes: 18 additions & 0 deletions about.md
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# Training-Repos
This is a super-module of the repositories used for training sessions:

- [prod-playbooks](https://github.com/openmicroscopy/prod-playbooks/) contains Ansible playbooks for
setting up the training server at outreach.openmicroscopy.org
- [training-scripts](https://github.com/ome/training-scripts/) provides maintenance scripts for
managing user accounts and data on the training server as well as scripts for user's workflows in the workshop itself.
- [training-notebooks](https://github.com/ome/training-notebooks) contains Jupyter notebooks used in the
workshops and includes Docker containers for deploying the Jupyter server.

## Data
The freely available files used for workshops can be found in [data.md](data.md).

## Setup
For all repositories, you will want to add an "upstream" remote which contains
the source branch that you are looking to release. Where upstream and
origin are the same, you will likely want both.
14 changes: 7 additions & 7 deletions data.md
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This document indicates the public data potentially used during
training sessions.
This document indicates the data imported into the outreach
server used for training sessions. All data is publicly available to download
from the links below.

Data available to all users (including trainers)
------------------------------------------------
Data imported for users (including trainers)
--------------------------------------------

- "siRNAi-HeLa" dataset:
* http://downloads.openmicroscopy.org/images/DV/siRNAi-HeLa/
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* Lionheart, W. R. B. (2015). An MRI DICOM data set of the head of a normal male human aged 52 [Data set]. Zenodo. http://doi.org/10.5281/zenodo.16956


Data available to trainers only
Data imported for trainers only
-------------------------------

- "INMAC384-DAPI-CM-eGFP_59223_1.xdce" plate:
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* http://downloads.openmicroscopy.org/images/PNG/will/WesternBlots/
- "idr0021" project:
* https://idr.openmicroscopy.org/webclient/?show=project-51


* Download and setup instructions at [idr0021-data-prep.md](https://github.com/ome/training-scripts/blob/master/maintenance/preparation/idr0021-data-prep.md)

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