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1. rsomics-world rsomics-world Public

   Rust

2. rsomics-common rsomics-common Public

   Shared primitives for every rsomics-* crate (errors, CLI scaffold, runner, progress, exit codes).

   Rust

3. rsomics-align-core rsomics-align-core Public

   Pairwise sequence alignment kernels (Smith-Waterman + Needleman-Wunsch, affine gap) for the rsomics-* tool family. Layer A primitive.

   Rust

4. rsomics-debruijn rsomics-debruijn Public

   de Bruijn graph types + linear-path collapse + unitig extraction for the rsomics-* tool family. Layer A primitive.

   Rust

5. rsomics-fm-index rsomics-fm-index Public

   FM-index over BWT + suffix array, with backward search / count / locate. Layer A primitive for the rsomics-* tool family.

   Rust

6. rsomics-fqgz rsomics-fqgz Public

   Chunked parallel-libdeflate gzip (or plain) FASTQ-record writer. Layer-A primitive shared by the rsomics-* fastq-* tools.

   Rust