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warning=FALSE added

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1 parent 67e7b9b commit a5ecff750adfff0e91755b6893c3f86b5c82f679 @onertipaday committed Dec 6, 2012
Showing with 2 additions and 2 deletions.
  1. +2 −2 CaseStudy/CaseStudy.Rnw
@@ -11,7 +11,7 @@
%------------------------------------------------------------
\begin{document}
-<<setup, include=TRUE, cache=FALSE, echo=FALSE, message=FALSE>>=
+<<setup, include=TRUE, cache=FALSE, echo=FALSE, warning=FALSE, message=FALSE>>=
## this is equivalent to \SweaveOpts{}
opts_chunk$set(fig.path='figure/report-', cache.path='cache/report-', fig.align='center', fig.show='hold', par=TRUE)
options(replace.assign=TRUE, width=68)
@@ -100,7 +100,7 @@ a mandatory step in every data analysis.
The following code create a directory \cc{aQM} depicting all kind of Quality Control Metrics and
a table highlighting bad quality experiments.
-<<eval=TRUE, cache=TRUE, results=FALSE, message=FALSE>>=
+<<eval=FALSE, message=FALSE>>=
library("arrayQualityMetrics")
arrayQualityMetrics(expressionset = as(EGEOD4183.affybatch, "ExpressionSet"), outdir = "aQM", force = TRUE)
@

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