diff --git a/.github/workflows/build_and_test.yml b/.github/workflows/build_and_test.yml
index e5ded14..8a43dce 100644
--- a/.github/workflows/build_and_test.yml
+++ b/.github/workflows/build_and_test.yml
@@ -18,7 +18,7 @@ jobs:
- name: Setup Python
uses: actions/setup-python@v5
with:
- python-version: "3.10.12"
+ python-version: "3.11.5"
- name: Install pipenv and dependencies
run: |
diff --git a/Pipfile b/Pipfile
index 461de5b..a9a4e5b 100644
--- a/Pipfile
+++ b/Pipfile
@@ -11,4 +11,3 @@ sphinxcontrib-email = "*"
pydata-sphinx-theme = "*"
make = "*"
ipython = "==8.10.0" # this version is required to avoid the "WARNING: Pygments lexer name 'ipython3' is not known" that occurs when trying to use notebooks in sphinx - maybe this will be updated
-sphinx-autobuild = "*"
diff --git a/Pipfile.lock b/Pipfile.lock
index 19db215..28e0893 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -1,7 +1,7 @@
{
"_meta": {
"hash": {
- "sha256": "0b44b155b1c82047e879305c2df6550cfc6f5e8a77ec7f4fee650295edbac1e3"
+ "sha256": "e09c429d69a538766f1230e238d213066ad4e94b6ff48c13272b91c9fb3e7c6b"
},
"pipfile-spec": 6,
"requires": {},
@@ -16,18 +16,19 @@
"default": {
"accessible-pygments": {
"hashes": [
- "sha256:416c6d8c1ea1c5ad8701903a20fcedf953c6e720d64f33dc47bfb2d3f2fa4e8d",
- "sha256:e7b57a9b15958e9601c7e9eb07a440c813283545a20973f2574a5f453d0e953e"
+ "sha256:40918d3e6a2b619ad424cb91e556bd3bd8865443d9f22f1dcdf79e33c8046872",
+ "sha256:88ae3211e68a1d0b011504b2ffc1691feafce124b845bd072ab6f9f66f34d4b7"
],
- "version": "==0.0.4"
+ "markers": "python_version >= '3.9'",
+ "version": "==0.0.5"
},
"alabaster": {
"hashes": [
- "sha256:1ee19aca801bbabb5ba3f5f258e4422dfa86f82f3e9cefb0859b283cdd7f62a3",
- "sha256:a27a4a084d5e690e16e01e03ad2b2e552c61a65469419b907243193de1a84ae2"
+ "sha256:c00dca57bca26fa62a6d7d0a9fcce65f3e026e9bfe33e9c538fd3fbb2144fd9e",
+ "sha256:fc6786402dc3fcb2de3cabd5fe455a2db534b371124f1f21de8731783dec828b"
],
- "markers": "python_version >= '3.6'",
- "version": "==0.7.13"
+ "markers": "python_version >= '3.10'",
+ "version": "==1.0.0"
},
"arrow": {
"hashes": [
@@ -39,26 +40,27 @@
},
"asttokens": {
"hashes": [
- "sha256:051ed49c3dcae8913ea7cd08e46a606dba30b79993209636c4875bc1d637bc24",
- "sha256:b03869718ba9a6eb027e134bfdf69f38a236d681c83c160d510768af11254ba0"
+ "sha256:0dcd8baa8d62b0c1d118b399b2ddba3c4aff271d0d7a9e0d4c1681c79035bbc7",
+ "sha256:e3078351a059199dd5138cb1c706e6430c05eff2ff136af5eb4790f9d28932e2"
],
- "version": "==2.4.1"
+ "markers": "python_version >= '3.8'",
+ "version": "==3.0.0"
},
"attrs": {
"hashes": [
- "sha256:1f28b4522cdc2fb4256ac1a020c78acf9cba2c6b461ccd2c126f3aa8e8335d04",
- "sha256:6279836d581513a26f1bf235f9acd333bc9115683f14f7e8fae46c98fc50e015"
+ "sha256:8f5c07333d543103541ba7be0e2ce16eeee8130cb0b3f9238ab904ce1e85baff",
+ "sha256:ac96cd038792094f438ad1f6ff80837353805ac950cd2aa0e0625ef19850c308"
],
- "markers": "python_version >= '3.7'",
- "version": "==23.1.0"
+ "markers": "python_version >= '3.8'",
+ "version": "==24.3.0"
},
"babel": {
"hashes": [
- "sha256:6919867db036398ba21eb5c7a0f6b28ab8cbc3ae7a73a44ebe34ae74a4e7d363",
- "sha256:efb1a25b7118e67ce3a259bed20545c29cb68be8ad2c784c83689981b7a57287"
+ "sha256:368b5b98b37c06b7daf6696391c3240c938b37767d4584413e8438c5c435fa8b",
+ "sha256:d1f3554ca26605fe173f3de0c65f750f5a42f924499bf134de6423582298e316"
],
- "markers": "python_version >= '3.7'",
- "version": "==2.14.0"
+ "markers": "python_version >= '3.8'",
+ "version": "==2.16.0"
},
"backcall": {
"hashes": [
@@ -69,123 +71,138 @@
},
"beautifulsoup4": {
"hashes": [
- "sha256:492bbc69dca35d12daac71c4db1bfff0c876c00ef4a2ffacce226d4638eb72da",
- "sha256:bd2520ca0d9d7d12694a53d44ac482d181b4ec1888909b035a3dbf40d0f57d4a"
+ "sha256:74e3d1928edc070d21748185c46e3fb33490f22f52a3addee9aee0f4f7781051",
+ "sha256:b80878c9f40111313e55da8ba20bdba06d8fa3969fc68304167741bbf9e082ed"
],
"markers": "python_full_version >= '3.6.0'",
- "version": "==4.12.2"
+ "version": "==4.12.3"
},
"bleach": {
"hashes": [
- "sha256:0a31f1837963c41d46bbf1331b8778e1308ea0791db03cc4e7357b97cf42a8fe",
- "sha256:3225f354cfc436b9789c66c4ee030194bee0568fbf9cbdad3bc8b5c26c5f12b6"
+ "sha256:117d9c6097a7c3d22fd578fcd8d35ff1e125df6736f554da4e432fdd63f31e5e",
+ "sha256:123e894118b8a599fd80d3ec1a6d4cc7ce4e5882b1317a7e1ba69b56e95f991f"
],
- "markers": "python_version >= '3.8'",
- "version": "==6.1.0"
+ "markers": "python_version >= '3.9'",
+ "version": "==6.2.0"
},
"certifi": {
"hashes": [
- "sha256:3cd43f1c6fa7dedc5899d69d3ad0398fd018ad1a17fba83ddaf78aa46c747516",
- "sha256:ddc6c8ce995e6987e7faf5e3f1b02b302836a0e5d98ece18392cb1a36c72ad56"
+ "sha256:1275f7a45be9464efc1173084eaa30f866fe2e47d389406136d332ed4967ec56",
+ "sha256:b650d30f370c2b724812bee08008be0c4163b163ddaec3f2546c1caf65f191db"
],
"markers": "python_version >= '3.6'",
- "version": "==2024.6.2"
+ "version": "==2024.12.14"
},
"charset-normalizer": {
"hashes": [
- "sha256:06435b539f889b1f6f4ac1758871aae42dc3a8c0e24ac9e60c2384973ad73027",
- "sha256:06a81e93cd441c56a9b65d8e1d043daeb97a3d0856d177d5c90ba85acb3db087",
- "sha256:0a55554a2fa0d408816b3b5cedf0045f4b8e1a6065aec45849de2d6f3f8e9786",
- "sha256:0b2b64d2bb6d3fb9112bafa732def486049e63de9618b5843bcdd081d8144cd8",
- "sha256:10955842570876604d404661fbccbc9c7e684caf432c09c715ec38fbae45ae09",
- "sha256:122c7fa62b130ed55f8f285bfd56d5f4b4a5b503609d181f9ad85e55c89f4185",
- "sha256:1ceae2f17a9c33cb48e3263960dc5fc8005351ee19db217e9b1bb15d28c02574",
- "sha256:1d3193f4a680c64b4b6a9115943538edb896edc190f0b222e73761716519268e",
- "sha256:1f79682fbe303db92bc2b1136016a38a42e835d932bab5b3b1bfcfbf0640e519",
- "sha256:2127566c664442652f024c837091890cb1942c30937add288223dc895793f898",
- "sha256:22afcb9f253dac0696b5a4be4a1c0f8762f8239e21b99680099abd9b2b1b2269",
- "sha256:25baf083bf6f6b341f4121c2f3c548875ee6f5339300e08be3f2b2ba1721cdd3",
- "sha256:2e81c7b9c8979ce92ed306c249d46894776a909505d8f5a4ba55b14206e3222f",
- "sha256:3287761bc4ee9e33561a7e058c72ac0938c4f57fe49a09eae428fd88aafe7bb6",
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+ "sha256:0099d79bdfcf5c1f0c2c72f91516702ebf8b0b8ddd8905f97a8aecf49712c621",
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+ "sha256:3710a9751938947e6327ea9f3ea6332a09bf0ba0c09cae9cb1f250bd1f1549bc",
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+ "sha256:40d3ff7fc90b98c637bda91c89d51264a3dcf210cade3a2c6f838c7268d7a4ca",
+ "sha256:425c5f215d0eecee9a56cdb703203dda90423247421bf0d67125add85d0c4455",
+ "sha256:43193c5cda5d612f247172016c4bb71251c784d7a4d9314677186a838ad34858",
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+ "sha256:f1a2f519ae173b5b6a2c9d5fa3116ce16e48b3462c8b96dfdded11055e3d6365",
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+ "sha256:f3e73a4255342d4eb26ef6df01e3962e73aa29baa3124a8e824c5d3364a65748",
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],
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- "version": "==3.3.2"
+ "version": "==3.4.0"
},
"colorama": {
"hashes": [
@@ -213,34 +230,34 @@
},
"docutils": {
"hashes": [
- "sha256:96f387a2c5562db4476f09f13bbab2192e764cac08ebbf3a34a95d9b1e4a59d6",
- "sha256:f08a4e276c3a1583a86dce3e34aba3fe04d02bba2dd51ed16106244e8a923e3b"
+ "sha256:3a6b18732edf182daa3cd12775bbb338cf5691468f91eeeb109deff6ebfa986f",
+ "sha256:dafca5b9e384f0e419294eb4d2ff9fa826435bf15f15b7bd45723e8ad76811b2"
],
- "markers": "python_version >= '3.7'",
- "version": "==0.20.1"
+ "markers": "python_version >= '3.9'",
+ "version": "==0.21.2"
},
"executing": {
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- "sha256:eac49ca94516ccc753f9fb5ce82603156e590b27525a8bc32cce8ae302eb61bc"
+ "sha256:8d63781349375b5ebccc3142f4b30350c0cd9c79f921cde38be2be4637e98eaf",
+ "sha256:8ea27ddd260da8150fa5a708269c4a10e76161e2496ec3e587da9e3c0fe4b9ab"
],
- "markers": "python_version >= '3.5'",
- "version": "==2.0.1"
+ "markers": "python_version >= '3.8'",
+ "version": "==2.1.0"
},
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- "sha256:e25df6647e1bc4a26070b700897b07b542ec898dd4f1f6ea013e7f6a88417225"
+ "sha256:794d4f0a58f848961ba16af7b9c85a3e88cd360df008c59aac6fc5ae9323b5d4",
+ "sha256:c9e5b7e908310918cf494a434eeb31384dd84a98b57a30bcb1f535015b554667"
],
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+ "version": "==2.21.1"
},
"idna": {
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- "sha256:028ff3aadf0609c1fd278d8ea3089299412a7a8b9bd005dd08b9f8285bcb5cfc",
- "sha256:82fee1fc78add43492d3a1898bfa6d8a904cc97d8427f683ed8e798d07761aa0"
+ "sha256:12f65c9b470abda6dc35cf8e63cc574b1c52b11df2c86030af0ac09b01b13ea9",
+ "sha256:946d195a0d259cbba61165e88e65941f16e9b36ea6ddb97f00452bae8b1287d3"
],
- "markers": "python_version >= '3.5'",
- "version": "==3.7"
+ "markers": "python_version >= '3.6'",
+ "version": "==3.10"
},
"imagesize": {
"hashes": [
@@ -261,20 +278,19 @@
},
"jedi": {
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- "sha256:cf0496f3651bc65d7174ac1b7d043eff454892c708a87d1b683e57b569927ffd",
- "sha256:e983c654fe5c02867aef4cdfce5a2fbb4a50adc0af145f70504238f18ef5e7e0"
+ "sha256:4770dc3de41bde3966b02eb84fbcf557fb33cce26ad23da12c742fb50ecb11f0",
+ "sha256:a8ef22bde8490f57fe5c7681a3c83cb58874daf72b4784de3cce5b6ef6edb5b9"
],
"markers": "python_version >= '3.6'",
- "version": "==0.19.1"
+ "version": "==0.19.2"
},
"jinja2": {
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- "sha256:7d6d50dd97d52cbc355597bd845fabfbac3f551e1f99619e39a35ce8c370b5fa",
- "sha256:ac8bd6544d4bb2c9792bf3a159e80bba8fda7f07e81bc3aed565432d5925ba90"
+ "sha256:4a3aee7acbbe7303aede8e9648d13b8bf88a429282aa6122a993f0ac800cb369",
+ "sha256:bc5dd2abb727a5319567b7a813e6a2e7318c39f4f487cfe6c89c6f9c7d25197d"
],
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"markers": "python_version >= '3.7'",
- "version": "==3.1.3"
+ "version": "==3.1.4"
},
"jinja2-time": {
"hashes": [
@@ -285,35 +301,35 @@
},
"jsonschema": {
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- "sha256:4f614fd46d8d61258610998997743ec5492a648b33cf478c1ddc23ed4598a5fa",
- "sha256:ed6231f0429ecf966f5bc8dfef245998220549cbbcf140f913b7464c52c3b6b3"
+ "sha256:d71497fef26351a33265337fa77ffeb82423f3ea21283cd9467bb03999266bc4",
+ "sha256:fbadb6f8b144a8f8cf9f0b89ba94501d143e50411a1278633f56a7acf7fd5566"
],
"markers": "python_version >= '3.8'",
- "version": "==4.20.0"
+ "version": "==4.23.0"
},
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- "sha256:9472fc4fea474cd74bea4a2b190daeccb5a9e4db2ea80efcf7a1b582fc9a81b8",
- "sha256:e74ba7c0a65e8cb49dc26837d6cfe576557084a8b423ed16a420984228104f93"
+ "sha256:0f38b83639958ce1152d02a7f062902c41c8fd20d558b0c34344292d417ae272",
+ "sha256:a09a0680616357d9a0ecf05c12ad234479f549239d0f5b55f3deea67475da9bf"
],
- "markers": "python_version >= '3.8'",
- "version": "==2023.11.2"
+ "markers": "python_version >= '3.9'",
+ "version": "==2024.10.1"
},
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+ "sha256:35b3a0947c4a6e9d589eb97d7d4cd5e90f910ee73101611f01283732bd6d9419",
+ "sha256:e8a19cc986cc45905ac3362915f410f3af85424b4c0905e94fa5f2cb08e8f23f"
],
"markers": "python_version >= '3.8'",
- "version": "==8.6.0"
+ "version": "==8.6.3"
},
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- "sha256:e11e02cd8ae0a9de5c6c44abf5727df9f2581055afe00b22183f621ba3585805"
+ "sha256:4f7315d2f6b4bcf2e3e7cb6e46772eba760ae459cd1f59d29eb57b0a01bd7409",
+ "sha256:aa5f8d32bbf6b431ac830496da7392035d6f61b4f54872f15c4bd2a9c3f536d9"
],
"markers": "python_version >= '3.8'",
- "version": "==5.5.0"
+ "version": "==5.7.2"
},
"jupyterlab-pygments": {
"hashes": [
@@ -323,110 +339,149 @@
"markers": "python_version >= '3.8'",
"version": "==0.3.0"
},
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+ "sha256:fb66442c2546446944437df74379e9cf9e9db353e61301d1a0e26482f43f0dd8"
],
- "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'",
- "version": "==4.9.3"
+ "markers": "python_version >= '3.6'",
+ "version": "==5.3.0"
},
"make": {
"hashes": [
@@ -437,77 +492,78 @@
},
"markupsafe": {
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],
- "markers": "python_version >= '3.7'",
- "version": "==2.1.5"
+ "markers": "python_version >= '3.9'",
+ "version": "==3.0.2"
},
"matplotlib-inline": {
"hashes": [
- "sha256:f1f41aab5328aa5aaea9b16d083b128102f8712542f819fe7e6a420ff581b311",
- "sha256:f887e5f10ba98e8d2b150ddcf4702c1e5f8b3a20005eb0f74bfdbd360ee6f304"
+ "sha256:8423b23ec666be3d16e16b60bdd8ac4e86e840ebd1dd11a30b9f117f2fa0ab90",
+ "sha256:df192d39a4ff8f21b1895d72e6a13f5fcc5099f00fa84384e0ea28c2cc0653ca"
],
- "markers": "python_version >= '3.5'",
- "version": "==0.1.6"
+ "markers": "python_version >= '3.8'",
+ "version": "==0.1.7"
},
"mistune": {
"hashes": [
@@ -519,52 +575,52 @@
},
"nbclient": {
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- "sha256:a3a1ddfb34d4a9d17fc744d655962714a866639acd30130e9be84191cd97cd15"
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],
"markers": "python_full_version >= '3.8.0'",
- "version": "==0.9.0"
+ "version": "==0.10.1"
},
"nbconvert": {
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],
"markers": "python_version >= '3.8'",
- "version": "==7.12.0"
+ "version": "==7.16.4"
},
"nbformat": {
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+ "sha256:322168b14f937a5d11362988ecac2a4952d3d8e3a2cbeb2319584631226d5b3a",
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],
"markers": "python_version >= '3.8'",
- "version": "==5.9.2"
+ "version": "==5.10.4"
},
"nbsphinx": {
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- "sha256:ec339c8691b688f8676104a367a4b8cf3ea01fd089dc28d24dec22d563b11562"
+ "sha256:736916e7b0dab28fc904f4a9ae3b53a9a50c29fccc6329c052fcc7485abcf2b7",
+ "sha256:d82f71084425db1f48e72515f15c25b4de8652ceaab513ee462ac05f1b8eae0a"
],
"index": "pypi",
"markers": "python_version >= '3.6'",
- "version": "==0.9.3"
+ "version": "==0.9.5"
},
"packaging": {
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- "sha256:048fb0e9405036518eaaf48a55953c750c11e1a1b68e0dd1a9d62ed0c092cfc5",
- "sha256:8c491190033a9af7e1d931d0b5dacc2ef47509b34dd0de67ed209b5203fc88c7"
+ "sha256:09abb1bccd265c01f4a3aa3f7a7db064b36514d2cba19a2f694fe6150451a759",
+ "sha256:c228a6dc5e932d346bc5739379109d49e8853dd8223571c7c5b55260edc0b97f"
],
- "markers": "python_version >= '3.7'",
- "version": "==23.2"
+ "markers": "python_version >= '3.8'",
+ "version": "==24.2"
},
"pandocfilters": {
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- "sha256:0b679503337d233b4339a817bfc8c50064e2eff681314376a47cb582305a7a38",
- "sha256:33aae3f25fd1a026079f5d27bdd52496f0e0803b3469282162bafdcbdf6ef14f"
+ "sha256:002b4a555ee4ebc03f8b66307e287fa492e4a77b4ea14d3f934328297bb4939e",
+ "sha256:93be382804a9cdb0a7267585f157e5d1731bbe5545a85b268d6f5fe6232de2bc"
],
"markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
- "version": "==1.5.0"
+ "version": "==1.5.1"
},
"parso": {
"hashes": [
@@ -574,14 +630,6 @@
"markers": "python_version >= '3.6'",
"version": "==0.8.4"
},
- "pexpect": {
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- "sha256:7236d1e080e4936be2dc3e326cec0af72acf9212a7e1d060210e70a47e253523",
- "sha256:ee7d41123f3c9911050ea2c2dac107568dc43b2d3b0c7557a33212c398ead30f"
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- },
"pickleshare": {
"hashes": [
"sha256:87683d47965c1da65cdacaf31c8441d12b8044cdec9aca500cd78fc2c683afca",
@@ -591,307 +639,323 @@
},
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],
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- "version": "==4.1.0"
+ "version": "==4.3.6"
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+ "version": "==3.0.48"
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+ "version": "==0.2.3"
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+ "markers": "python_version >= '3.9'",
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- "version": "==0.13.2"
+ "markers": "python_version >= '3.9'",
+ "version": "==0.22.3"
},
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},
"snowballstemmer": {
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@@ -902,54 +966,45 @@
},
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],
"markers": "python_version >= '3.8'",
- "version": "==2.5"
+ "version": "==2.6"
},
"sphinx": {
"hashes": [
- "sha256:1e09160a40b956dc623c910118fa636da93bd3ca0b9876a7b3df90f07d691560",
- "sha256:9a5160e1ea90688d5963ba09a2dcd8bdd526620edbb65c328728f1b2228d5ab5"
+ "sha256:09719015511837b76bf6e03e42eb7595ac8c2e41eeb9c29c5b755c6b677992a2",
+ "sha256:43c1911eecb0d3e161ad78611bc905d1ad0e523e4ddc202a58a821773dc4c927"
],
"index": "pypi",
- "markers": "python_version >= '3.9'",
- "version": "==7.2.6"
- },
- "sphinx-autobuild": {
- "hashes": [
- "sha256:8fe8cbfdb75db04475232f05187c776f46f6e9e04cacf1e49ce81bdac649ccac",
- "sha256:de1ca3b66e271d2b5b5140c35034c89e47f263f2cd5db302c9217065f7443f05"
- ],
- "index": "pypi",
- "markers": "python_version >= '3.6'",
- "version": "==2021.3.14"
+ "markers": "python_version >= '3.10'",
+ "version": "==8.1.3"
},
"sphinx-design": {
"hashes": [
- "sha256:1af1267b4cea2eedd6724614f19dcc88fe2e15aff65d06b2f6252cee9c4f4c1e",
- "sha256:e8e513acea6f92d15c6de3b34e954458f245b8e761b45b63950f65373352ab00"
+ "sha256:b11f37db1a802a183d61b159d9a202314d4d2fe29c163437001324fe2f19549c",
+ "sha256:b44eea3719386d04d765c1a8257caca2b3e6f8421d7b3a5e742c0fd45f84e632"
],
"index": "pypi",
- "markers": "python_version >= '3.8'",
- "version": "==0.5.0"
+ "markers": "python_version >= '3.9'",
+ "version": "==0.6.1"
},
"sphinxcontrib-applehelp": {
"hashes": [
- "sha256:094c4d56209d1734e7d252f6e0b3ccc090bd52ee56807a5d9315b19c122ab15d",
- "sha256:39fdc8d762d33b01a7d8f026a3b7d71563ea3b72787d5f00ad8465bd9d6dfbfa"
+ "sha256:2f29ef331735ce958efa4734873f084941970894c6090408b079c61b2e1c06d1",
+ "sha256:4cd3f0ec4ac5dd9c17ec65e9ab272c9b867ea77425228e68ecf08d6b28ddbdb5"
],
"markers": "python_version >= '3.9'",
- "version": "==1.0.7"
+ "version": "==2.0.0"
},
"sphinxcontrib-devhelp": {
"hashes": [
- "sha256:63b41e0d38207ca40ebbeabcf4d8e51f76c03e78cd61abe118cf4435c73d4212",
- "sha256:fe8009aed765188f08fcaadbb3ea0d90ce8ae2d76710b7e29ea7d047177dae2f"
+ "sha256:411f5d96d445d1d73bb5d52133377b4248ec79db5c793ce7dbe59e074b4dd1ad",
+ "sha256:aefb8b83854e4b0998877524d1029fd3e6879210422ee3780459e28a1f03a8a2"
],
"markers": "python_version >= '3.9'",
- "version": "==1.0.5"
+ "version": "==2.0.0"
},
"sphinxcontrib-email": {
"hashes": [
@@ -962,11 +1017,11 @@
},
"sphinxcontrib-htmlhelp": {
"hashes": [
- "sha256:6c26a118a05b76000738429b724a0568dbde5b72391a688577da08f11891092a",
- "sha256:8001661c077a73c29beaf4a79968d0726103c5605e27db92b9ebed8bab1359e9"
+ "sha256:166759820b47002d22914d64a075ce08f4c46818e17cfc9470a9786b759b19f8",
+ "sha256:c9e2916ace8aad64cc13a0d233ee22317f2b9025b9cf3295249fa985cc7082e9"
],
"markers": "python_version >= '3.9'",
- "version": "==2.0.4"
+ "version": "==2.1.0"
},
"sphinxcontrib-jsmath": {
"hashes": [
@@ -978,19 +1033,19 @@
},
"sphinxcontrib-qthelp": {
"hashes": [
- "sha256:62b9d1a186ab7f5ee3356d906f648cacb7a6bdb94d201ee7adf26db55092982d",
- "sha256:bf76886ee7470b934e363da7a954ea2825650013d367728588732c7350f49ea4"
+ "sha256:4fe7d0ac8fc171045be623aba3e2a8f613f8682731f9153bb2e40ece16b9bbab",
+ "sha256:b18a828cdba941ccd6ee8445dbe72ffa3ef8cbe7505d8cd1fa0d42d3f2d5f3eb"
],
"markers": "python_version >= '3.9'",
- "version": "==1.0.6"
+ "version": "==2.0.0"
},
"sphinxcontrib-serializinghtml": {
"hashes": [
- "sha256:0c64ff898339e1fac29abd2bf5f11078f3ec413cfe9c046d3120d7ca65530b54",
- "sha256:9b36e503703ff04f20e9675771df105e58aa029cfcbc23b8ed716019b7416ae1"
+ "sha256:6e2cb0eef194e10c27ec0023bfeb25badbbb5868244cf5bc5bdc04e4464bf331",
+ "sha256:e9d912827f872c029017a53f0ef2180b327c3f7fd23c87229f7a8e8b70031d4d"
],
"markers": "python_version >= '3.9'",
- "version": "==1.1.9"
+ "version": "==2.0.0"
},
"stack-data": {
"hashes": [
@@ -1001,60 +1056,60 @@
},
"tinycss2": {
"hashes": [
- "sha256:2b80a96d41e7c3914b8cda8bc7f705a4d9c49275616e886103dd839dfc847847",
- "sha256:8cff3a8f066c2ec677c06dbc7b45619804a6938478d9d73c284b29d14ecb0627"
+ "sha256:10c0972f6fc0fbee87c3edb76549357415e94548c1ae10ebccdea16fb404a9b7",
+ "sha256:3a49cf47b7675da0b15d0c6e1df8df4ebd96e9394bb905a5775adb0d884c5289"
],
- "markers": "python_version >= '3.7'",
- "version": "==1.2.1"
+ "markers": "python_version >= '3.8'",
+ "version": "==1.4.0"
},
"tornado": {
"hashes": [
- "sha256:163b0aafc8e23d8cdc3c9dfb24c5368af84a81e3364745ccb4427669bf84aec8",
- "sha256:25486eb223babe3eed4b8aecbac33b37e3dd6d776bc730ca14e1bf93888b979f",
- "sha256:454db8a7ecfcf2ff6042dde58404164d969b6f5d58b926da15e6b23817950fc4",
- "sha256:613bf4ddf5c7a95509218b149b555621497a6cc0d46ac341b30bd9ec19eac7f3",
- "sha256:6d5ce3437e18a2b66fbadb183c1d3364fb03f2be71299e7d10dbeeb69f4b2a14",
- "sha256:8ae50a504a740365267b2a8d1a90c9fbc86b780a39170feca9bcc1787ff80842",
- "sha256:92d3ab53183d8c50f8204a51e6f91d18a15d5ef261e84d452800d4ff6fc504e9",
- "sha256:a02a08cc7a9314b006f653ce40483b9b3c12cda222d6a46d4ac63bb6c9057698",
- "sha256:b24b8982ed444378d7f21d563f4180a2de31ced9d8d84443907a0a64da2072e7",
- "sha256:d9a566c40b89757c9aa8e6f032bcdb8ca8795d7c1a9762910c722b1635c9de4d",
- "sha256:e2e20b9113cd7293f164dc46fffb13535266e713cdb87bd2d15ddb336e96cfc4"
+ "sha256:072ce12ada169c5b00b7d92a99ba089447ccc993ea2143c9ede887e0937aa803",
+ "sha256:1a017d239bd1bb0919f72af256a970624241f070496635784d9bf0db640d3fec",
+ "sha256:2876cef82e6c5978fde1e0d5b1f919d756968d5b4282418f3146b79b58556482",
+ "sha256:304463bd0772442ff4d0f5149c6f1c2135a1fae045adf070821c6cdc76980634",
+ "sha256:908b71bf3ff37d81073356a5fadcc660eb10c1476ee6e2725588626ce7e5ca38",
+ "sha256:92bad5b4746e9879fd7bf1eb21dce4e3fc5128d71601f80005afa39237ad620b",
+ "sha256:932d195ca9015956fa502c6b56af9eb06106140d844a335590c1ec7f5277d10c",
+ "sha256:bca9eb02196e789c9cb5c3c7c0f04fb447dc2adffd95265b2c7223a8a615ccbf",
+ "sha256:c36e62ce8f63409301537222faffcef7dfc5284f27eec227389f2ad11b09d946",
+ "sha256:c82c46813ba483a385ab2a99caeaedf92585a1f90defb5693351fa7e4ea0bf73",
+ "sha256:e828cce1123e9e44ae2a50a9de3055497ab1d0aeb440c5ac23064d9e44880da1"
],
- "index": "pypi",
"markers": "python_version >= '3.8'",
- "version": "==6.4.1"
+ "version": "==6.4.2"
},
"traitlets": {
"hashes": [
- "sha256:8cdd83c040dab7d1dee822678e5f5d100b514f7b72b01615b26fc5718916fdf9",
- "sha256:fcdf85684a772ddeba87db2f398ce00b40ff550d1528c03c14dbf6a02003cd80"
+ "sha256:9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7",
+ "sha256:b74e89e397b1ed28cc831db7aea759ba6640cb3de13090ca145426688ff1ac4f"
],
"markers": "python_version >= '3.8'",
- "version": "==5.14.2"
+ "version": "==5.14.3"
},
"types-python-dateutil": {
"hashes": [
- "sha256:1f4f10ac98bb8b16ade9dbee3518d9ace017821d94b057a425b069f834737f4b",
- "sha256:f977b8de27787639986b4e28963263fd0e5158942b3ecef91b9335c130cb1ce9"
+ "sha256:18f493414c26ffba692a72369fea7a154c502646301ebfe3d56a04b3767284cb",
+ "sha256:e248a4bc70a486d3e3ec84d0dc30eec3a5f979d6e7ee4123ae043eedbb987f53"
],
- "version": "==2.8.19.14"
+ "markers": "python_version >= '3.8'",
+ "version": "==2.9.0.20241206"
},
"typing-extensions": {
"hashes": [
- "sha256:23478f88c37f27d76ac8aee6c905017a143b0b1b886c3c9f66bc2fd94f9f5783",
- "sha256:af72aea155e91adfc61c3ae9e0e342dbc0cba726d6cba4b6c72c1f34e47291cd"
+ "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d",
+ "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"
],
"markers": "python_version >= '3.8'",
- "version": "==4.9.0"
+ "version": "==4.12.2"
},
"urllib3": {
"hashes": [
- "sha256:450b20ec296a467077128bff42b73080516e71b56ff59a60a02bef2232c4fa9d",
- "sha256:d0570876c61ab9e520d776c38acbbb5b05a776d3f9ff98a5c8fd5162a444cf19"
+ "sha256:ca899ca043dcb1bafa3e262d73aa25c465bfb49e0bd9dd5d59f1d0acba2f8fac",
+ "sha256:e7d814a81dad81e6caf2ec9fdedb284ecc9c73076b62654547cc64ccdcae26e9"
],
"markers": "python_version >= '3.8'",
- "version": "==2.2.1"
+ "version": "==2.2.3"
},
"wcwidth": {
"hashes": [
diff --git a/source/_static/images/oe_logo_name.svg b/source/_static/images/oe_logo_name.svg
index 66d45a5..ba2381a 100644
--- a/source/_static/images/oe_logo_name.svg
+++ b/source/_static/images/oe_logo_name.svg
@@ -1 +1,191 @@
-
\ No newline at end of file
+
+
diff --git a/source/_static/theme_overrides.css b/source/_static/theme_overrides.css
index 4faa78d..ff9d1a0 100644
--- a/source/_static/theme_overrides.css
+++ b/source/_static/theme_overrides.css
@@ -108,13 +108,13 @@ h6 {
/* navigation bar colors*/
.navbar {
- background: white !important;
+ background: #cd98c2ff !important;
font-size: 1em;
}
.navbar-nav>.active>.nav-link {
- background-color: white !important;
- color: #344b39 !important;
+ background-color: #e6eddf !important;
+ color: #2f401f !important;
font-weight: normal !important;
transition-duration: 0.4s;
}
@@ -125,20 +125,20 @@ h6 {
}
.navbar a {
- color: grey !important;
+ color: white !important;
font-family: "Bitter", sans-serif;
transition-duration: 0.4s;
margin-right: 10px;
}
.search-button {
- color: grey !important;
+ color: white !important;
margin-right: 30px;
}
.navbar a:hover {
- color: grey !important;
+ color: #2f401f !important;
transition-duration: 0.4s;
}
diff --git a/source/conf.py b/source/conf.py
index 8d834aa..951ebfa 100644
--- a/source/conf.py
+++ b/source/conf.py
@@ -86,7 +86,7 @@
# a list of builtin themes.
#
html_theme = "pydata_sphinx_theme"
-html_logo = "_static/images/miniscope-logo.png"
+html_logo = "_static/images/oe_logo_name.svg"
html_scaled_image_link = True
html_title = project
diff --git a/source/ucla-miniscope-v4/developer/mods/spectral.rst b/source/ucla-miniscope-v4/developer/mods/spectral.rst
index 0970365..37c67e5 100644
--- a/source/ucla-miniscope-v4/developer/mods/spectral.rst
+++ b/source/ucla-miniscope-v4/developer/mods/spectral.rst
@@ -10,7 +10,7 @@ The UCLA Miniscope v4 as sold by Open Ephys is compatible with green indicators
Standard
********
-470nm (blue) LED excitation light source (`LXZ1-PB01 `__) to image a green indicator e.g. `GCaMP6f `__:
+470nm (blue) LED excitation light source (`LXZ1-PB01 `__) to image a green indicator e.g. `GCaMP6f `__:
.. figure:: /_static/images/gcamp6f.svg
:alt: plot of emission/excitation spectra of GCaMP6f
@@ -38,7 +38,7 @@ The standard UCLA Miniscope v4 is sold by Open Ephys in DIY kits and already ass
Lime
****
-560nm (yellow-green) LED excitation light source (`LXZ1-PX01 `__) to image a red indicator e.g. `jRGECO1a `__:
+560nm (yellow-green) LED excitation light source (`LXZ1-PX01 `__) to image a red indicator e.g. `jRGECO1a `__:
.. figure:: /_static/images/jrgeco1a.svg
:alt: plot of emission/excitation spectra of jRGECO1a