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@opencb

Open source for Computational Biology

  • opencga

    An Open Computational Genomics Analysis platform for big data processing and analysis in genomics

    Java Apache-2.0 61 89 228 2 Updated Jul 22, 2019
  • iva

    Generic Interactive Variant Analysis browser

    HTML Apache-2.0 14 17 13 0 Updated Jun 28, 2019
  • jsorolla

    JSorolla is a JavaScript Library for biological and genomic data visualization

    HTML Apache-2.0 22 27 27 0 Updated Jun 28, 2019
  • cellbase

    High-Performance NoSQL database and RESTful web services to access to most relevant biological data

    Java Apache-2.0 33 51 61 7 Updated Jun 25, 2019
  • biodata

    Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics

    Java Apache-2.0 26 18 27 1 Updated Jun 20, 2019
  • java-common-libs

    OpenCB common libs project

    Java Apache-2.0 20 2 2 0 Updated Jun 7, 2019
  • bionetdb

    BioNetDB implements a storage engine to work with biological networks using a NoQSL Graph database

    JavaScript Apache-2.0 5 3 5 0 Updated May 22, 2019
  • oskar

    Oskar implements an analysis suite for working with genomic variation data. Some big data technologies such as Spark are used to provide big data analytics

    Java Apache-2.0 1 2 7 0 Updated Feb 5, 2019
  • genome-maps

    An open-source high-performance web-based HTML5 genome browser. Genome Maps can be customized and allow browsing user data such as BAM and VCF files among other formats.

    HTML GPL-2.0 11 33 21 1 Updated Sep 27, 2018
  • hpg-bigdata

    This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster

    Java Apache-2.0 15 17 23 1 Updated Apr 13, 2018
  • hpg-aligner

    HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment

    C GPL-2.0 13 30 9 1 Updated Jul 7, 2017
  • hpg-libs

    C libs for HPG project

    C GPL-2.0 7 4 5 1 Updated Jul 7, 2017
  • Java Apache-2.0 3 18 3 0 Updated Aug 22, 2016
  • ga4gh

    This repository implements the Protobuf and Avro schemas from GA4GH available at http://ga4gh.org/#/schemas

    Java Apache-2.0 7 6 0 0 Updated Jul 25, 2016
  • hpg-variant

    A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics

    C GPL-2.0 14 8 8 0 Updated Feb 12, 2016
  • cell-maps

    An open-source web-based HTML5 systems biology tool for visualizing and analysing biological networks

    HTML GPL-2.0 7 9 5 0 Updated Feb 4, 2016
  • datastore

    Datastore library for querying RDBMS and NoSQL databases

    Java Apache-2.0 6 1 4 0 Updated Jan 22, 2016
  • easyngs

    EasyNGS provide a rich and interactive web application for NGS data processing

    HTML Apache-2.0 2 4 1 0 Updated Oct 28, 2015
  • variant

    Variant is an ambitious project aimed to provide a complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics

    JavaScript 5 2 1 0 Updated Feb 6, 2015
  • CSS 1 0 0 0 Updated Aug 7, 2014
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