HPG Pore README
Welcome to HPG Pore !
HPG Pore is a toolkit to explore and analyze nanopore sequencing data that can run both on a single computer and on the Hadoop distributed computing framework.
HPG Pore allows efficient management of huge amounts of data, thus constituting a practical solution for the near future as well as a promising model for the development of new tools to deal with genomic big data.
You can contact any of the following developers:
* Joaquín Tárraga (firstname.lastname@example.org) * Susi Gallego (email@example.com) * Ignacio Medina (firstname.lastname@example.org)
To build the HPG Pore application you need to install in your system:
* Java * Maven * gcc * zlib * Hadoop (if you want HPG Pore to run on a Hadoop cluster)
DOWNLOAD and BUILDING
HPG Pore has been opened to the community and released in GitHub, so you can download by invoking the following commands:
$ git clone https://github.com/opencb/hpg-pore.git
Finally, use the script build.sh to build the HPG Pore application:
$ cd hpg-pore $ ./build.sh
For command line options invoke:
$ ./hpg-pore.sh -h
A tutorial and further documentation are available at http://github.com/opencb/hpg-pore/wiki