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Configuration changes #1415

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pfurio opened this issue Nov 5, 2019 · 0 comments
Open

Configuration changes #1415

pfurio opened this issue Nov 5, 2019 · 0 comments
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@pfurio
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pfurio commented Nov 5, 2019

We need to do a few changes to the main OpenCGA configuration file.

  • Add:
    • A new batch section in catalog for the execution of internal tasks.
     batch:
         id: ""        # SGE, SLURM
         queue: ""     # Queue id
         timeout: 60 # Maximum time in minutes a task can be running
  • Remove:

    • userDefaultQuota
    • tempJobsDir
    • toolDir
    • catalog.offset: Not in use since 1.4.0
  • Rename:

    • dataDir for workspace
    • catalog.search for catalog.searchEngine
  • Other changes:

    • catalog.searchEngine should have the same database sections as catalog.database
    • audit section for something similar to:
     audit:
       manager: ""             # Java manager of the audit implementation to be used to audit. If empty, catalog database will be used.
       maxDocuments: 20000000  # Maximum number of documents that will be created in the audit collection.
       maxSize: 100            # Maximum size that the audit collection will have in Gigabytes (GB).
@pfurio pfurio added this to the v2.0.0 milestone Nov 5, 2019
@pfurio pfurio self-assigned this Nov 5, 2019
pfurio added a commit that referenced this issue Nov 5, 2019
- Remove userDefaultQuota, tempJobsDir, toolDir and offset.
- Rename dataDir and catalog.search for workspace and
catalog.searchEngine respectively.
pfurio added a commit that referenced this issue Nov 6, 2019
- add batch section within catalog
- change audit section
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