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Documentation for COBRApy

For installation instructions, please see INSTALL.rst.

Many of the examples below are viewable as IPython notebooks, which can be viewed at nbviewer.

.. toctree::
    :numbered:
    :maxdepth: 2

    getting_started
    building_model
    io
    simulating
    deletions
    phenotype_phase_plane
    sampling
    loopless
    gapfilling
    media
    solvers
    constraints_objectives
    pymatbridge
    faq
    _autogen/modules


Indices and tables