@hredestig hredestig released this Jun 19, 2017 · 169 commits to devel since this release

Assets 2

Release notes for cobrapy 0.6.2


  • Fix in the ordering and rounding of FVA summary
  • Shared memory, improve speed during sampling
  • Debug model.remove_reactions to properly work with context manager.
    This lead to the deprecation of reaction.delete as this was not compatible
    with the concept of being able to later revert the change.
  • Adding two models (modela + modelb) again results in a model with
    the objective set to the sum of the two models objectives
  • When adding reactions to a model, the reactions with identifiers
    identical to those in the model are
    ignored. #511

New features

  • model.merge can be used to merge two models, more flexibly than
    the overloaded + and += operators.

Deprecated features

  • reaction.delete has been deprecated in favor of reaction.remove_from_model
  • overloaded + and += for cobra.Model are deprecated in favor of