@hredestig hredestig released this Jul 14, 2017 · 160 commits to devel since this release

Assets 2

Release notes for cobrapy 0.7.0

Fixes

  • cobra.flux_analysis.reaction.assess
    was broken
    following the release of 0.6.0 and has now been fixed (and now with
    unit tests).
  • production_envelope failed when model C-source was formulated as
    -> x instead of x <-. Fixed added option to guess the C-source by
    taking the medium reaction with the highest input C flux.
  • model_to_pymatbridge needs scipy and that's correctly handled now.

New features

  • flux_variability_analysis now has the pfba_factor parameter
    which enables the inclusion of a constraint on the max sum of
    absolute fluxes when doing FVA.

Deprecated features

  • cobra.flux_analysis.reaction.assess_{precursors,products} were
    essentially copies of each other and have been merged to
    cobra.flux_analysis.reaction.assess_component