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Release notes for cobrapy 0.8.0
- Tests no longer generates warnings about using deprecated functions.
- Gapfilling integrality thresholds now supported for all optlang solvers.
Model.slim_optimize()can be used perform optimization without
creating a solution. Can lead to significant speedup compared to
Model.optimizewhen repeatedly doing optimizations and only making
use of the objective value as avoiding the need to fetch all values
from the solver object.
- solution, model, metabolite and reaction now have html
representation so they give more informative prints in jupyter
- New convenience functions
Model.optimizehas new parameter
raise_errorto enable option to
get trigger exception if no feasible solution could be found.
str(reaction)now gives the more useful reaction id and the
str(reaction)no longer gives