@hredestig hredestig released this Aug 10, 2017 · 130 commits to devel since this release

Assets 2

Release notes for cobrapy 0.8.2

Fixes

  • Guarantee that sampler._reproject always returns a feasible point
    and will not attempt to reproject already feasible
    points. #564
  • Model.summary no longer fails when calling after the model has
    changed. Fixed by letting the summary function re-compute a solution
    (default) or letting user supply a prior computed solution
    object. #566
  • Metabolites must now have valid identifiers before being added to a
    model or ValueError is raised.
  • Fix use of underscores in key/value pairs in legacy sbml
    notes. #547

Backwards incompatible changes

  • the Solution class no longer contains links progenitor model's
    reactions and metabolites. Removed since it those can change after
    the solution has been computed making them erroneous. This of course
    implies that Solution constructor changes to:
        def __init__(self, objective_value, status, fluxes, reduced_costs=None,
                   shadow_prices=None, **kwargs):